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Potassium in PDB 1xck: Crystal Structure of Apo Groel

Protein crystallography data

The structure of Crystal Structure of Apo Groel, PDB code: 1xck was solved by C.Bartolucci, D.Lamba, S.Grazulis, E.Manakova, H.Heumann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.71 / 2.92
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 262.800, 283.600, 135.720, 90.00, 90.00, 90.00
R / Rfree (%) 20.3 / 23.5

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Potassium atom in the Crystal Structure of Apo Groel (pdb code 1xck). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 14 binding sites of Potassium where determined in the Crystal Structure of Apo Groel, PDB code: 1xck:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 14 in 1xck

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Potassium binding site 1 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K3010

b:88.3
occ:1.00
 O A:GLY32 3.2 31.9 1.0
O A:HOH3017 3.3 24.4 1.0
O A:THR30 3.4 26.3 1.0
O A:LYS51 3.9 26.0 1.0
C A:GLY32 4.4 31.3 1.0
O A:HOH3070 4.4 18.1 1.0
C A:THR30 4.5 24.2 1.0
CB A:LYS51 4.5 26.5 1.0
N A:GLY32 4.8 27.4 1.0
C A:LYS51 4.9 26.8 1.0

Potassium binding site 2 out of 14 in 1xck

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Potassium binding site 2 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K3140

b:70.5
occ:1.00
 O B:HOH3149 3.0 18.8 1.0
O B:THR30 3.3 25.3 1.0
O B:GLY32 3.4 38.5 1.0
O B:LYS51 3.8 29.0 1.0
CB B:LYS51 4.4 28.2 1.0
C B:THR30 4.4 25.2 1.0
C B:GLY32 4.6 38.6 1.0
C B:LYS51 4.8 28.3 1.0
N B:GLY32 4.9 34.8 1.0

Potassium binding site 3 out of 14 in 1xck

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Potassium binding site 3 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K3100

b:78.7
occ:1.00
 O C:THR30 3.2 35.9 1.0
O C:GLY32 3.2 45.3 1.0
N C:GLY32 3.9 39.9 1.0
C C:GLY32 4.0 43.8 1.0
C C:THR30 4.1 33.1 1.0
O C:HOH3155 4.1 24.2 1.0
O C:LYS51 4.2 30.2 1.0
C C:LEU31 4.4 37.9 1.0
CA C:GLY32 4.5 42.5 1.0
CA C:LEU31 4.5 36.1 1.0
N C:LEU31 4.7 34.6 1.0
CB C:LYS51 4.9 27.3 1.0
CA C:GLY35 4.9 33.6 1.0
CA C:THR30 5.0 30.0 1.0

Potassium binding site 4 out of 14 in 1xck

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Potassium binding site 4 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K3020

b:65.9
occ:1.00
 O D:THR30 3.1 31.0 1.0
O D:HOH3025 3.1 44.1 1.0
O D:HOH3099 3.2 21.2 1.0
O D:GLY32 3.3 34.8 1.0
O D:LEU31 3.6 35.6 1.0
O D:LYS51 4.2 28.4 1.0
C D:THR30 4.2 30.2 1.0
C D:LEU31 4.4 32.5 1.0
C D:GLY32 4.5 34.5 1.0
CB D:LYS51 4.8 28.8 1.0
CA D:LEU31 4.9 31.1 1.0

Potassium binding site 5 out of 14 in 1xck

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Potassium binding site 5 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K3110

b:80.9
occ:1.00
 O E:HOH3140 3.3 50.9 1.0
O E:HOH3174 3.3 32.8 1.0
O E:THR30 3.3 36.2 1.0
O E:GLY32 3.6 43.2 1.0
O E:LYS51 3.7 29.9 1.0
C E:THR30 4.4 34.0 1.0
CB E:LYS51 4.6 28.7 1.0
C E:GLY32 4.7 42.9 1.0
C E:LYS51 4.7 29.7 1.0
N E:GLY32 4.9 39.4 1.0
CB E:THR30 5.0 28.7 1.0

Potassium binding site 6 out of 14 in 1xck

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Potassium binding site 6 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K3120

b:81.3
occ:1.00
 O F:THR30 3.0 27.6 1.0
O F:HOH3157 3.2 30.8 1.0
O F:GLY32 3.4 34.8 1.0
O F:LYS51 4.1 28.7 1.0
C F:THR30 4.1 27.2 1.0
N F:GLY32 4.2 33.2 1.0
C F:GLY32 4.4 34.9 1.0
C F:LEU31 4.6 31.6 1.0
CA F:LEU31 4.7 29.3 1.0
CA F:GLY32 4.8 34.2 1.0
N F:LEU31 4.9 28.7 1.0
CB F:THR30 4.9 23.0 1.0

Potassium binding site 7 out of 14 in 1xck

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Potassium binding site 7 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K3130

b:79.4
occ:1.00
 O G:THR30 3.2 30.3 1.0
O G:HOH3143 3.3 40.1 1.0
O G:GLY32 3.5 35.9 1.0
O G:HOH3214 3.9 30.6 1.0
O G:LYS51 4.0 29.7 1.0
C G:THR30 4.4 28.5 1.0
N G:GLY32 4.5 31.3 1.0
C G:GLY32 4.5 35.5 1.0
C G:LEU31 5.0 30.8 1.0
CA G:LEU31 5.0 30.4 1.0

Potassium binding site 8 out of 14 in 1xck

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Potassium binding site 8 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K3030

b:86.2
occ:1.00
 O H:HOH3091 3.2 38.7 1.0
O H:HOH3062 3.4 47.3 1.0
O H:GLY32 3.4 50.4 1.0
O H:THR30 3.6 36.9 1.0
O H:LEU31 4.5 42.6 1.0
CB H:LYS51 4.6 32.2 1.0
C H:GLY32 4.6 48.4 1.0
O H:LYS51 4.6 30.4 1.0
CD H:LYS51 4.7 35.1 1.0
CA H:PRO33 4.7 46.0 1.0
C H:THR30 4.8 36.5 1.0
CA H:GLY35 4.8 38.7 1.0
N H:GLY35 4.8 40.9 1.0

Potassium binding site 9 out of 14 in 1xck

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Potassium binding site 9 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
I:K3040

b:94.6
occ:1.00
 O I:THR30 3.5 34.9 1.0
O I:HOH3083 3.6 33.2 1.0
O I:GLY32 4.1 47.0 1.0
O I:LYS51 4.2 30.7 1.0
O I:LEU31 4.3 41.3 1.0
C I:THR30 4.7 33.7 1.0
CB I:LYS51 4.9 30.3 1.0

Potassium binding site 10 out of 14 in 1xck

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Potassium binding site 10 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
J:K3060

b:78.8
occ:1.00
 O J:THR30 3.2 34.0 1.0
O J:GLY32 3.6 43.2 1.0
O J:LEU31 3.8 39.0 1.0
O J:HOH3099 4.0 25.0 1.0
O J:LYS51 4.2 33.2 1.0
C J:THR30 4.4 33.5 1.0
C J:LEU31 4.5 38.0 1.0
C J:GLY32 4.6 42.9 1.0

Reference:

C.Bartolucci, D.Lamba, S.Grazulis, E.Manakova, H.Heumann. Crystal Structure of Wild-Type Chaperonin Groel J.Mol.Biol. V. 354 940 2005.
ISSN: ISSN 0022-2836
PubMed: 16288915
DOI: 10.1016/J.JMB.2005.09.096
Page generated: Mon Aug 12 05:45:59 2024

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