Atomistry » Potassium » PDB 1w2b-1yj9 » 1xck
Atomistry »
  Potassium »
    PDB 1w2b-1yj9 »
      1xck »

Potassium in PDB 1xck: Crystal Structure of Apo Groel

Protein crystallography data

The structure of Crystal Structure of Apo Groel, PDB code: 1xck was solved by C.Bartolucci, D.Lamba, S.Grazulis, E.Manakova, H.Heumann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.71 / 2.92
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 262.800, 283.600, 135.720, 90.00, 90.00, 90.00
R / Rfree (%) 20.3 / 23.5

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Potassium atom in the Crystal Structure of Apo Groel (pdb code 1xck). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 14 binding sites of Potassium where determined in the Crystal Structure of Apo Groel, PDB code: 1xck:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 14 in 1xck

Go back to Potassium Binding Sites List in 1xck
Potassium binding site 1 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K3010

b:88.3
occ:1.00
 O A:GLY32 3.2 31.9 1.0
O A:HOH3017 3.3 24.4 1.0
O A:THR30 3.4 26.3 1.0
O A:LYS51 3.9 26.0 1.0
C A:GLY32 4.4 31.3 1.0
O A:HOH3070 4.4 18.1 1.0
C A:THR30 4.5 24.2 1.0
CB A:LYS51 4.5 26.5 1.0
N A:GLY32 4.8 27.4 1.0
C A:LYS51 4.9 26.8 1.0

Potassium binding site 2 out of 14 in 1xck

Go back to Potassium Binding Sites List in 1xck
Potassium binding site 2 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K3140

b:70.5
occ:1.00
 O B:HOH3149 3.0 18.8 1.0
O B:THR30 3.3 25.3 1.0
O B:GLY32 3.4 38.5 1.0
O B:LYS51 3.8 29.0 1.0
CB B:LYS51 4.4 28.2 1.0
C B:THR30 4.4 25.2 1.0
C B:GLY32 4.6 38.6 1.0
C B:LYS51 4.8 28.3 1.0
N B:GLY32 4.9 34.8 1.0

Potassium binding site 3 out of 14 in 1xck

Go back to Potassium Binding Sites List in 1xck
Potassium binding site 3 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K3100

b:78.7
occ:1.00
 O C:THR30 3.2 35.9 1.0
O C:GLY32 3.2 45.3 1.0
N C:GLY32 3.9 39.9 1.0
C C:GLY32 4.0 43.8 1.0
C C:THR30 4.1 33.1 1.0
O C:HOH3155 4.1 24.2 1.0
O C:LYS51 4.2 30.2 1.0
C C:LEU31 4.4 37.9 1.0
CA C:GLY32 4.5 42.5 1.0
CA C:LEU31 4.5 36.1 1.0
N C:LEU31 4.7 34.6 1.0
CB C:LYS51 4.9 27.3 1.0
CA C:GLY35 4.9 33.6 1.0
CA C:THR30 5.0 30.0 1.0

Potassium binding site 4 out of 14 in 1xck

Go back to Potassium Binding Sites List in 1xck
Potassium binding site 4 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K3020

b:65.9
occ:1.00
 O D:THR30 3.1 31.0 1.0
O D:HOH3025 3.1 44.1 1.0
O D:HOH3099 3.2 21.2 1.0
O D:GLY32 3.3 34.8 1.0
O D:LEU31 3.6 35.6 1.0
O D:LYS51 4.2 28.4 1.0
C D:THR30 4.2 30.2 1.0
C D:LEU31 4.4 32.5 1.0
C D:GLY32 4.5 34.5 1.0
CB D:LYS51 4.8 28.8 1.0
CA D:LEU31 4.9 31.1 1.0

Potassium binding site 5 out of 14 in 1xck

Go back to Potassium Binding Sites List in 1xck
Potassium binding site 5 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K3110

b:80.9
occ:1.00
 O E:HOH3140 3.3 50.9 1.0
O E:HOH3174 3.3 32.8 1.0
O E:THR30 3.3 36.2 1.0
O E:GLY32 3.6 43.2 1.0
O E:LYS51 3.7 29.9 1.0
C E:THR30 4.4 34.0 1.0
CB E:LYS51 4.6 28.7 1.0
C E:GLY32 4.7 42.9 1.0
C E:LYS51 4.7 29.7 1.0
N E:GLY32 4.9 39.4 1.0
CB E:THR30 5.0 28.7 1.0

Potassium binding site 6 out of 14 in 1xck

Go back to Potassium Binding Sites List in 1xck
Potassium binding site 6 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K3120

b:81.3
occ:1.00
 O F:THR30 3.0 27.6 1.0
O F:HOH3157 3.2 30.8 1.0
O F:GLY32 3.4 34.8 1.0
O F:LYS51 4.1 28.7 1.0
C F:THR30 4.1 27.2 1.0
N F:GLY32 4.2 33.2 1.0
C F:GLY32 4.4 34.9 1.0
C F:LEU31 4.6 31.6 1.0
CA F:LEU31 4.7 29.3 1.0
CA F:GLY32 4.8 34.2 1.0
N F:LEU31 4.9 28.7 1.0
CB F:THR30 4.9 23.0 1.0

Potassium binding site 7 out of 14 in 1xck

Go back to Potassium Binding Sites List in 1xck
Potassium binding site 7 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K3130

b:79.4
occ:1.00
 O G:THR30 3.2 30.3 1.0
O G:HOH3143 3.3 40.1 1.0
O G:GLY32 3.5 35.9 1.0
O G:HOH3214 3.9 30.6 1.0
O G:LYS51 4.0 29.7 1.0
C G:THR30 4.4 28.5 1.0
N G:GLY32 4.5 31.3 1.0
C G:GLY32 4.5 35.5 1.0
C G:LEU31 5.0 30.8 1.0
CA G:LEU31 5.0 30.4 1.0

Potassium binding site 8 out of 14 in 1xck

Go back to Potassium Binding Sites List in 1xck
Potassium binding site 8 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K3030

b:86.2
occ:1.00
 O H:HOH3091 3.2 38.7 1.0
O H:HOH3062 3.4 47.3 1.0
O H:GLY32 3.4 50.4 1.0
O H:THR30 3.6 36.9 1.0
O H:LEU31 4.5 42.6 1.0
CB H:LYS51 4.6 32.2 1.0
C H:GLY32 4.6 48.4 1.0
O H:LYS51 4.6 30.4 1.0
CD H:LYS51 4.7 35.1 1.0
CA H:PRO33 4.7 46.0 1.0
C H:THR30 4.8 36.5 1.0
CA H:GLY35 4.8 38.7 1.0
N H:GLY35 4.8 40.9 1.0

Potassium binding site 9 out of 14 in 1xck

Go back to Potassium Binding Sites List in 1xck
Potassium binding site 9 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
I:K3040

b:94.6
occ:1.00
 O I:THR30 3.5 34.9 1.0
O I:HOH3083 3.6 33.2 1.0
O I:GLY32 4.1 47.0 1.0
O I:LYS51 4.2 30.7 1.0
O I:LEU31 4.3 41.3 1.0
C I:THR30 4.7 33.7 1.0
CB I:LYS51 4.9 30.3 1.0

Potassium binding site 10 out of 14 in 1xck

Go back to Potassium Binding Sites List in 1xck
Potassium binding site 10 out of 14 in the Crystal Structure of Apo Groel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Crystal Structure of Apo Groel within 5.0Å range:
probe atom residue distance (Å) B Occ
J:K3060

b:78.8
occ:1.00
 O J:THR30 3.2 34.0 1.0
O J:GLY32 3.6 43.2 1.0
O J:LEU31 3.8 39.0 1.0
O J:HOH3099 4.0 25.0 1.0
O J:LYS51 4.2 33.2 1.0
C J:THR30 4.4 33.5 1.0
C J:LEU31 4.5 38.0 1.0
C J:GLY32 4.6 42.9 1.0

Reference:

C.Bartolucci, D.Lamba, S.Grazulis, E.Manakova, H.Heumann. Crystal Structure of Wild-Type Chaperonin Groel J.Mol.Biol. V. 354 940 2005.
ISSN: ISSN 0022-2836
PubMed: 16288915
DOI: 10.1016/J.JMB.2005.09.096
Page generated: Sun Dec 13 23:04:56 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy