Potassium in PDB 1vph: Crystal Structure of A Ybjq-Like Protein of Unknown Function (SSO2532) From Sulfolobus Solfataricus P2 at 1.76 A Resolution

The structure of Crystal Structure of A Ybjq-Like Protein of Unknown Function (SSO2532) From Sulfolobus Solfataricus P2 at 1.76 A Resolution, PDB code: 1vph was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	16.22 / 1.76
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	79.860, 92.180, 114.130, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 22.2

The structure of Crystal Structure of A Ybjq-Like Protein of Unknown Function (SSO2532) From Sulfolobus Solfataricus P2 at 1.76 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Potassium atom in the Crystal Structure of A Ybjq-Like Protein of Unknown Function (SSO2532) From Sulfolobus Solfataricus P2 at 1.76 A Resolution (pdb code 1vph). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Crystal Structure of A Ybjq-Like Protein of Unknown Function (SSO2532) From Sulfolobus Solfataricus P2 at 1.76 A Resolution, PDB code: 1vph:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in the Crystal Structure of A Ybjq-Like Protein of Unknown Function (SSO2532) From Sulfolobus Solfataricus P2 at 1.76 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of A Ybjq-Like Protein of Unknown Function (SSO2532) From Sulfolobus Solfataricus P2 at 1.76 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:K138 b:22.2 occ:1.00 OD1 A:ASN85 2.2 21.1 1.0 NE2 A:HIS79 2.3 17.9 1.0 NE2 A:HIS89 2.3 19.6 1.0 O A:HOH177 2.6 34.0 1.0 OD1 A:ASP83 2.7 53.8 1.0 CG A:ASN85 2.9 20.8 1.0 OD2 A:ASP83 3.0 35.3 1.0 ND2 A:ASN85 3.0 22.8 1.0 CD2 A:HIS89 3.2 19.2 1.0 CE1 A:HIS79 3.2 23.6 1.0 CG A:ASP83 3.2 33.2 1.0 CD2 A:HIS79 3.3 20.7 1.0 CE1 A:HIS89 3.4 17.6 1.0 OE1 B:GLU54 3.9 29.0 1.0 ND1 A:HIS79 4.3 20.5 1.0 CG A:HIS89 4.4 18.4 1.0 CB A:ASN85 4.4 19.2 1.0 CG A:HIS79 4.4 21.1 1.0 ND1 A:HIS89 4.4 16.0 1.0 O A:ASP83 4.7 36.7 1.0 CB A:ASP83 4.7 33.8 1.0 C A:ASN85 4.8 17.2 1.0 O A:ASN85 4.8 19.1 1.0 CD B:GLU54 4.9 30.0 1.0 N A:ASN85 4.9 22.1 1.0 CA A:ASN85 5.0 20.6 1.0 CG2 A:THR47 5.0 16.2 1.0

Potassium binding site 2 out of 4 in the Crystal Structure of A Ybjq-Like Protein of Unknown Function (SSO2532) From Sulfolobus Solfataricus P2 at 1.76 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of A Ybjq-Like Protein of Unknown Function (SSO2532) From Sulfolobus Solfataricus P2 at 1.76 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:K138 b:27.3 occ:1.00 O A:HOH181 2.0 35.1 1.0 NE2 C:HIS89 2.2 18.6 1.0 OD1 C:ASN85 2.3 21.5 1.0 OD2 C:ASP83 2.4 26.6 1.0 NE2 C:HIS79 2.4 17.9 1.0 CG C:ASN85 3.0 20.5 1.0 ND2 C:ASN85 3.1 22.9 1.0 CD2 C:HIS89 3.1 22.2 1.0 CG C:ASP83 3.2 36.5 1.0 CE1 C:HIS89 3.3 19.2 1.0 CD2 C:HIS79 3.3 20.2 1.0 CE1 C:HIS79 3.4 23.5 1.0 CB C:ASP83 3.5 33.1 1.0 OE1 A:GLU54 4.0 29.7 1.0 OD1 C:ASP83 4.3 37.7 1.0 CG C:HIS89 4.3 17.5 1.0 ND1 C:HIS89 4.3 20.0 1.0 CB C:ASN85 4.5 19.5 1.0 CG C:HIS79 4.5 22.1 1.0 ND1 C:HIS79 4.5 20.6 1.0 O C:ASN85 4.9 19.6 1.0 C C:ASN85 4.9 17.9 1.0 CG2 C:THR47 5.0 22.6 1.0

Potassium binding site 3 out of 4 in the Crystal Structure of A Ybjq-Like Protein of Unknown Function (SSO2532) From Sulfolobus Solfataricus P2 at 1.76 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of A Ybjq-Like Protein of Unknown Function (SSO2532) From Sulfolobus Solfataricus P2 at 1.76 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:K138 b:24.3 occ:1.00 OD1 D:ASN85 2.2 24.3 1.0 NE2 D:HIS79 2.3 20.5 1.0 NE2 D:HIS89 2.3 18.5 1.0 O D:HOH190 2.6 39.9 1.0 OD2 D:ASP83 2.7 33.8 1.0 CG D:ASN85 3.0 17.6 1.0 ND2 D:ASN85 3.1 23.1 1.0 CE1 D:HIS79 3.2 22.0 1.0 CD2 D:HIS89 3.2 20.1 1.0 CD2 D:HIS79 3.3 14.8 1.0 CE1 D:HIS89 3.3 18.5 1.0 CG D:ASP83 3.4 33.2 1.0 OE1 E:GLU54 3.7 30.9 1.0 CB D:ASP83 3.7 35.9 1.0 ND1 D:HIS79 4.3 22.1 1.0 OD1 D:ASP83 4.4 33.9 1.0 CG D:HIS89 4.4 15.6 1.0 CG D:HIS79 4.4 19.5 1.0 ND1 D:HIS89 4.4 17.9 1.0 CB D:ASN85 4.5 19.3 1.0 O D:ASP83 4.7 40.2 1.0 CD E:GLU54 4.8 31.9 1.0 O E:HOH173 4.8 36.7 1.0 C D:ASN85 4.9 18.0 1.0 O D:ASN85 4.9 19.6 1.0

Potassium binding site 4 out of 4 in the Crystal Structure of A Ybjq-Like Protein of Unknown Function (SSO2532) From Sulfolobus Solfataricus P2 at 1.76 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of A Ybjq-Like Protein of Unknown Function (SSO2532) From Sulfolobus Solfataricus P2 at 1.76 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ F:K138 b:28.8 occ:1.00 NE2 F:HIS89 2.2 16.5 1.0 OD1 F:ASN85 2.3 25.0 1.0 NE2 F:HIS79 2.3 16.4 1.0 OD2 F:ASP83 2.5 39.9 1.0 CG F:ASN85 3.0 23.8 1.0 ND2 F:ASN85 3.0 24.8 1.0 CE1 F:HIS79 3.1 23.5 1.0 CD2 F:HIS89 3.1 23.2 1.0 CE1 F:HIS89 3.2 20.7 1.0 CG F:ASP83 3.3 40.3 1.0 CD2 F:HIS79 3.4 22.4 1.0 CB F:ASP83 3.7 34.5 1.0 OE1 D:GLU54 3.8 26.0 1.0 ND1 F:HIS79 4.3 22.0 1.0 CG F:HIS89 4.3 15.1 1.0 OD1 F:ASP83 4.3 40.8 1.0 ND1 F:HIS89 4.3 20.2 1.0 CB F:ASN85 4.4 19.5 1.0 CG F:HIS79 4.5 20.3 1.0 O F:ASP83 4.5 33.9 1.0 CD D:GLU54 4.8 27.3 1.0 CG2 F:THR47 4.9 20.1 1.0 C F:ASN85 4.9 18.1 1.0 O F:ASN85 4.9 19.5 1.0 C F:ASP83 5.0 33.1 1.0 CA F:ASP83 5.0 31.1 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.