Atomistry » Potassium » PDB 1u1g-1w29 » 1v16
Atomistry »
  Potassium »
    PDB 1u1g-1w29 »
      1v16 »

Potassium in PDB 1v16: Crosstalk Between Cofactor Binding and the Phosphorylation Loop Conformation in the Bckd Machine

Enzymatic activity of Crosstalk Between Cofactor Binding and the Phosphorylation Loop Conformation in the Bckd Machine

All present enzymatic activity of Crosstalk Between Cofactor Binding and the Phosphorylation Loop Conformation in the Bckd Machine:
1.2.4.4;

Protein crystallography data

The structure of Crosstalk Between Cofactor Binding and the Phosphorylation Loop Conformation in the Bckd Machine, PDB code: 1v16 was solved by J.Li, R.M.Wynn, M.Machius, J.L.Chuang, S.Karthikeyan, D.R.Tomchick, D.T.Chuang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.33 / 1.90
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 145.397, 145.397, 69.104, 90.00, 90.00, 120.00
R / Rfree (%) 13.1 / 17

Other elements in 1v16:

The structure of Crosstalk Between Cofactor Binding and the Phosphorylation Loop Conformation in the Bckd Machine also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Chlorine (Cl) 4 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crosstalk Between Cofactor Binding and the Phosphorylation Loop Conformation in the Bckd Machine (pdb code 1v16). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crosstalk Between Cofactor Binding and the Phosphorylation Loop Conformation in the Bckd Machine, PDB code: 1v16:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 1v16

Go back to Potassium Binding Sites List in 1v16
Potassium binding site 1 out of 2 in the Crosstalk Between Cofactor Binding and the Phosphorylation Loop Conformation in the Bckd Machine


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crosstalk Between Cofactor Binding and the Phosphorylation Loop Conformation in the Bckd Machine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K501

b:18.8
occ:1.00
O A:PRO163 2.6 7.1 1.0
O A:HOH2099 2.7 10.5 1.0
O A:SER161 2.9 7.6 1.0
OE1 A:GLN167 2.9 8.0 1.0
OE1 A:GLN112 2.9 12.0 1.0
OG A:SER161 3.0 7.6 1.0
OG1 A:THR166 3.0 9.1 1.0
CD A:GLN112 3.7 16.0 1.0
C A:SER161 3.7 8.5 1.0
C A:PRO163 3.7 8.5 1.0
CD A:GLN167 3.9 9.5 1.0
CB A:SER161 4.1 9.7 1.0
N A:SER161 4.1 8.9 1.0
O B:HOH2100 4.2 12.2 1.0
CA A:SER161 4.2 7.4 1.0
N A:GLN167 4.2 7.8 1.0
N A:THR166 4.3 6.2 1.0
CB A:THR166 4.3 7.4 1.0
N A:PRO163 4.4 7.6 1.0
NE2 A:GLN112 4.4 19.0 1.0
CG A:GLN112 4.4 16.3 1.0
N A:ALA165 4.4 6.5 1.0
CA A:LEU164 4.5 7.9 1.0
CB A:GLN167 4.5 8.1 1.0
C A:SER162 4.5 7.7 1.0
N A:LEU164 4.5 7.7 1.0
CA A:PRO163 4.6 7.3 1.0
C A:LEU164 4.6 7.1 1.0
O A:GLY111 4.6 13.5 1.0
N A:SER162 4.6 6.1 1.0
O A:HOH2153 4.7 13.0 1.0
O A:HOH2101 4.7 10.2 1.0
CG A:GLN167 4.7 8.9 1.0
CA A:THR166 4.7 6.5 1.0
NE2 A:GLN167 4.7 7.1 1.0
CB A:GLN112 4.8 15.3 1.0
CD A:PRO163 4.8 8.2 1.0
O A:SER162 4.8 8.0 1.0
OE2 B:GLU113 4.8 7.9 1.0
C A:THR166 4.9 6.9 1.0
CA A:GLN167 5.0 7.5 1.0

Potassium binding site 2 out of 2 in 1v16

Go back to Potassium Binding Sites List in 1v16
Potassium binding site 2 out of 2 in the Crosstalk Between Cofactor Binding and the Phosphorylation Loop Conformation in the Bckd Machine


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crosstalk Between Cofactor Binding and the Phosphorylation Loop Conformation in the Bckd Machine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K502

b:23.4
occ:1.00
O B:ASN183 2.7 7.3 1.0
O B:CYS178 2.7 7.8 1.0
O B:GLY128 2.8 11.0 1.0
O B:ASP181 2.9 8.7 1.0
O B:LEU130 2.9 7.0 1.0
O B:HOH2145 3.1 12.9 1.0
OG1 B:THR131 3.5 9.8 1.0
C B:ASN183 3.7 8.2 1.0
C B:LEU130 3.7 8.0 1.0
C B:ASP181 3.9 9.1 1.0
C B:CYS178 3.9 9.1 1.0
C B:GLY128 3.9 9.6 1.0
O B:ILE179 4.0 8.9 1.0
SG B:CYS185 4.1 9.9 1.0
N B:LEU130 4.1 7.4 1.0
O B:HOH2153 4.2 24.0 1.0
N B:ASN183 4.2 8.4 1.0
N B:CYS185 4.2 7.2 1.0
C B:SER129 4.2 8.7 1.0
C B:ILE179 4.3 9.4 1.0
CA B:SER129 4.4 8.6 1.0
CB B:ASP181 4.4 10.0 1.0
N B:ASP181 4.4 8.8 1.0
CB B:CYS185 4.4 9.3 1.0
N B:THR131 4.4 8.2 1.0
CA B:PRO184 4.4 7.0 1.0
CA B:ASP181 4.4 9.3 1.0
N B:PRO184 4.5 7.7 1.0
CA B:LEU130 4.6 8.2 1.0
CA B:ILE179 4.6 8.8 1.0
N B:SER129 4.6 9.5 1.0
CB B:THR131 4.7 9.1 1.0
CA B:ASN183 4.7 7.5 1.0
C B:PRO184 4.7 6.7 1.0
N B:ILE179 4.7 9.1 1.0
CA B:THR131 4.7 7.7 1.0
O B:SER129 4.8 8.1 1.0
N B:LYS182 4.9 8.0 1.0
CA B:CYS178 4.9 9.2 1.0
CA B:CYS185 5.0 7.7 1.0
CA B:GLY128 5.0 9.7 1.0
OD2 B:ASP181 5.0 14.3 1.0

Reference:

J.Li, R.M.Wynn, M.Machius, J.L.Chuang, S.Karthikeyan, D.R.Tomchick, D.T.Chuang. Cross-Talk Between Thiamin Diphosphate Binding and Phosphorylation Loop Conformation in Human Branched-Chain {Alpha}-Keto Acid Decarboxylase/Dehydrogenase J.Biol.Chem. V. 279 32968 2004.
ISSN: ISSN 0021-9258
PubMed: 15166214
DOI: 10.1074/JBC.M403611200
Page generated: Sun Dec 13 23:02:36 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy