Atomistry » Potassium » PDB 1s72-1u1f » 1ti7
Atomistry »
  Potassium »
    PDB 1s72-1u1f »
      1ti7 »

Potassium in PDB 1ti7: Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution

Protein crystallography data

The structure of Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution, PDB code: 1ti7 was solved by H.K.Lamb, K.Leslie, A.L.Dodds, M.Nutley, A.Cooper, C.Johnson, P.Thompson, D.K.Stammers, A.R.Hawkins, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.92 / 1.70
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 76.390, 76.390, 104.160, 90.00, 90.00, 120.00
R / Rfree (%) 17.3 / 21.7

Other elements in 1ti7:

The structure of Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution (pdb code 1ti7). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution, PDB code: 1ti7:
Jump to Potassium binding site number: 1; 2; 3; 4; 5;

Potassium binding site 1 out of 5 in 1ti7

Go back to Potassium Binding Sites List in 1ti7
Potassium binding site 1 out of 5 in the Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K379

b:22.8
occ:1.00
 O A:VAL53 2.6 15.8 1.0
O A:GLN48 2.6 21.9 1.0
O A:ILE50 2.8 17.7 1.0
O A:HOH1481 2.9 33.9 1.0
O A:HOH1483 3.6 15.9 1.0
C A:ILE50 3.7 16.5 1.0
C A:GLN48 3.7 23.1 1.0
C A:VAL53 3.7 17.5 1.0
O A:PRO51 4.0 22.9 1.0
O A:HOH1002 4.1 20.5 1.0
CA A:PRO51 4.2 19.8 1.0
C A:PRO51 4.2 23.1 1.0
N A:ILE50 4.3 14.0 1.0
N A:PRO51 4.3 20.8 1.0
CA A:GLN48 4.3 18.0 1.0
N A:VAL53 4.3 16.7 1.0
CA A:VAL53 4.4 12.1 1.0
O A:LEU47 4.4 19.3 1.0
CB A:VAL53 4.5 16.5 1.0
C A:ALA49 4.6 18.3 1.0
CA A:ILE50 4.6 17.4 1.0
N A:ALA49 4.6 15.8 1.0
N A:THR54 4.7 17.2 1.0
O A:HOH1375 4.9 52.9 1.0
CA A:ALA49 4.9 16.4 1.0
CA A:THR54 4.9 16.9 1.0
O A:HOH1482 4.9 39.1 1.0

Potassium binding site 2 out of 5 in 1ti7

Go back to Potassium Binding Sites List in 1ti7
Potassium binding site 2 out of 5 in the Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K380

b:36.4
occ:1.00
 O A:HOH1035 2.2 13.1 1.0
O A:LEU143 2.6 22.1 1.0
OG A:SER145 2.7 18.9 1.0
O A:VAL138 3.0 24.0 1.0
O A:LEU141 3.0 18.1 1.0
O A:HOH1121 3.3 27.2 1.0
O A:ARG139 3.4 23.4 1.0
CB A:SER145 3.6 15.8 1.0
O A:HOH1120 3.7 37.5 1.0
C A:ARG139 3.7 21.7 1.0
CA A:ARG139 3.8 17.5 1.0
C A:LEU143 3.8 21.0 1.0
C A:VAL138 3.9 18.6 1.0
N A:SER145 4.0 16.7 1.0
C A:LEU141 4.1 15.8 1.0
N A:ARG139 4.3 19.9 1.0
N A:LEU141 4.3 18.8 1.0
N A:LEU143 4.3 19.6 1.0
OD1 A:ASN212 4.4 19.6 1.0
C A:PRO144 4.4 18.4 1.0
CA A:SER145 4.5 14.4 1.0
CD2 A:LEU143 4.5 25.6 1.0
CG1 A:VAL138 4.6 14.2 1.0
CA A:LEU141 4.6 17.8 1.0
CA A:PRO144 4.6 15.5 1.0
N A:GLN140 4.7 21.5 1.0
N A:PRO144 4.7 16.5 1.0
CA A:LEU143 4.7 22.3 1.0
CB A:LEU141 4.8 26.2 1.0

Potassium binding site 3 out of 5 in 1ti7

Go back to Potassium Binding Sites List in 1ti7
Potassium binding site 3 out of 5 in the Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K381

b:34.3
occ:1.00
 O A:SER112 2.7 14.2 1.0
OG A:SER111 2.8 17.1 1.0
O A:HOH1193 2.9 19.2 1.0
N A:ALA150 2.9 14.7 1.0
O A:VAL148 3.4 12.8 1.0
SD A:MET113 3.6 17.2 1.0
CB A:ALA150 3.6 14.0 1.0
C A:SER112 3.7 14.9 1.0
CA A:TYR149 3.7 17.0 1.0
N A:SER112 3.7 13.9 1.0
C A:TYR149 3.8 14.5 1.0
CG A:MET113 3.8 13.2 1.0
C A:SER111 3.8 15.9 1.0
CA A:ALA150 3.9 12.0 1.0
CB A:SER111 3.9 17.3 1.0
CA A:SER111 4.1 13.5 1.0
C A:VAL148 4.2 13.3 1.0
C6N A:NAP400 4.2 17.1 1.0
O A:SER111 4.3 15.0 1.0
CA A:SER112 4.3 14.8 1.0
NE2 A:GLN17 4.3 13.0 1.0
N A:TYR149 4.4 15.9 1.0
OE1 A:GLN17 4.6 17.0 1.0
C5N A:NAP400 4.6 18.9 1.0
N A:MET113 4.7 14.8 1.0
O A:ALA150 4.8 16.1 1.0
C A:ALA150 4.9 14.0 1.0
CD A:GLN17 4.9 15.3 1.0
CB A:TYR149 4.9 15.4 1.0
CB A:MET113 5.0 17.9 1.0
O A:TYR149 5.0 17.4 1.0

Potassium binding site 4 out of 5 in 1ti7

Go back to Potassium Binding Sites List in 1ti7
Potassium binding site 4 out of 5 in the Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K382

b:35.7
occ:1.00
 O A:SER117 2.7 28.1 1.0
O A:GLY120 2.7 28.9 1.0
O A:HOH1155 2.8 32.7 1.0
O A:HOH1413 2.8 51.8 1.0
O A:HOH1082 3.3 41.8 1.0
C A:GLY120 3.7 27.1 1.0
C A:SER117 3.7 28.4 1.0
O A:HOH1156 4.2 42.1 1.0
CA A:SER117 4.3 24.1 1.0
CA A:PRO121 4.4 28.6 1.0
N A:PRO121 4.4 31.2 1.0
N A:GLY120 4.5 26.5 1.0
N A:TRP122 4.6 28.4 1.0
O A:TRP122 4.6 27.3 1.0
CA A:GLY120 4.6 26.3 1.0
O A:HOH1032 4.7 43.8 1.0
CB A:SER117 4.7 22.0 1.0
N A:LEU118 4.8 23.5 1.0
C A:PRO121 5.0 33.2 1.0

Potassium binding site 5 out of 5 in 1ti7

Go back to Potassium Binding Sites List in 1ti7
Potassium binding site 5 out of 5 in the Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of Nmra, A Negative Transcriptional Regulator, in Complex with Nadp at 1.7A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K383

b:25.7
occ:1.00
 O A:GLN140 2.7 22.4 1.0
O A:HOH1109 3.1 23.7 1.0
O A:HOH1118 3.1 29.4 1.0
C A:GLN140 3.9 22.1 1.0
CA A:LEU141 4.2 17.8 1.0
N A:GLY142 4.3 16.5 1.0
N A:LEU141 4.5 18.8 1.0
C A:LEU141 4.5 15.8 1.0
O A:HOH1416 4.6 52.4 1.0
CD2 A:LEU141 4.7 34.0 1.0
O A:HOH1119 4.8 25.4 1.0

Reference:

H.K.Lamb, K.Leslie, A.L.Dodds, M.Nutley, A.Cooper, C.Johnson, P.Thompson, D.K.Stammers, A.R.Hawkins. The Negative Transcriptional Regulator Nmra Discriminates Between Oxidized and Reduced Dinucleotides. J.Biol.Chem. V. 278 32107 2003.
ISSN: ISSN 0021-9258
PubMed: 12764138
DOI: 10.1074/JBC.M304104200
Page generated: Mon Aug 12 05:29:55 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy