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Potassium in PDB 1t60: Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule

Protein crystallography data

The structure of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule, PDB code: 1t60 was solved by R.M.Vanacore, S.Shanmugasundararaj, D.B.Friedman, O.Bondar, B.G.Hudson, M.Sundaramoorthy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 127.880, 140.129, 160.692, 90.00, 91.26, 90.00
R / Rfree (%) 18.9 / 21.6

Other elements in 1t60:

The structure of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule also contains other interesting chemical elements:

Chlorine (Cl) 16 atoms

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Potassium atom in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule (pdb code 1t60). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 16 binding sites of Potassium where determined in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule, PDB code: 1t60:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 16 in 1t60

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Potassium binding site 1 out of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule


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Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K5109

b:20.2
occ:1.00
 O B:HOH5142 3.1 25.8 1.0
OH C:TYR187 3.1 15.1 1.0
N F:ALA184 3.2 13.8 1.0
O F:HOH5264 3.2 26.9 1.0
ND2 B:ASN66 3.3 18.8 1.0
CE2 C:TYR187 3.6 15.7 1.0
CD2 F:TYR183 3.7 14.5 1.0
CB F:ALA184 3.8 14.4 1.0
CZ C:TYR187 3.8 15.2 1.0
CA F:TYR183 3.8 13.8 1.0
CB F:TYR183 3.8 14.5 1.0
CE1 B:PHE64 3.8 17.9 1.0
CB B:ASN66 3.9 18.1 1.0
C F:TYR183 4.0 13.6 1.0
CG B:ASN66 4.1 18.6 1.0
ND2 B:ASN72 4.1 20.8 1.0
CA F:ALA184 4.1 14.7 1.0
CG F:TYR183 4.2 14.9 1.0
CD1 B:PHE64 4.7 15.6 1.0
CZ B:PHE64 4.7 16.3 1.0
CE2 F:TYR183 4.7 16.6 1.0
O B:HOH5165 4.8 34.7 1.0
CD2 C:TYR187 4.8 16.3 1.0

Potassium binding site 2 out of 16 in 1t60

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Potassium binding site 2 out of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K5101

b:26.1
occ:1.00
 OH A:TYR189 2.9 12.1 1.0
OH C:TYR63 3.1 13.5 1.0
ND2 C:ASN65 3.1 24.4 1.0
N E:ALA186 3.2 14.1 1.0
CB E:ALA186 3.6 14.1 1.0
CZ A:TYR189 3.6 14.8 1.0
CE1 C:TYR63 3.7 11.7 1.0
CE2 C:TYR71 3.7 26.0 1.0
O C:HOH5296 3.8 35.4 1.0
CZ C:TYR63 3.8 11.6 1.0
CE2 A:TYR189 3.9 15.2 1.0
CB E:TYR185 3.9 13.1 1.0
CD2 E:TYR185 3.9 14.2 1.0
CA E:ALA186 4.0 14.1 1.0
CD2 C:TYR71 4.1 23.5 1.0
CA E:TYR185 4.1 14.6 1.0
C E:TYR185 4.1 13.1 1.0
CG C:ASN65 4.2 23.4 1.0
NH1 C:ARG75 4.2 12.9 1.0
CB C:ASN65 4.4 19.2 1.0
CG E:TYR185 4.4 12.9 1.0
N E:ASN187 4.5 14.8 1.0
CE1 A:TYR189 4.5 15.7 1.0
O C:HOH5306 4.7 39.0 1.0
C E:ALA186 4.8 14.8 1.0
CZ C:TYR71 4.8 26.8 1.0
CD1 C:TYR63 5.0 13.2 1.0

Potassium binding site 3 out of 16 in 1t60

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Potassium binding site 3 out of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K5110

b:19.8
occ:1.00
 OH F:TYR187 3.1 17.4 1.0
O C:HOH5286 3.1 38.7 1.0
N C:ALA184 3.2 14.0 1.0
O E:HOH278 3.2 21.7 1.0
ND2 E:ASN66 3.2 16.6 1.0
CE2 F:TYR187 3.6 14.1 1.0
CD2 C:TYR183 3.7 14.4 1.0
CB C:ALA184 3.7 12.0 1.0
CA C:TYR183 3.8 15.5 1.0
CZ F:TYR187 3.8 15.6 1.0
CB C:TYR183 3.9 13.7 1.0
C C:TYR183 4.0 14.8 1.0
CB E:ASN66 4.0 17.8 1.0
CE1 E:PHE64 4.0 13.0 1.0
ND2 E:ASN72 4.0 21.2 1.0
CA C:ALA184 4.1 13.8 1.0
CG E:ASN66 4.1 18.5 1.0
CG C:TYR183 4.3 14.1 1.0
CE2 C:TYR183 4.7 17.9 1.0
CD1 E:PHE64 4.8 14.1 1.0
CD2 F:TYR187 4.9 13.2 1.0
CZ E:PHE64 4.9 13.2 1.0
O C:TYR182 5.0 16.5 1.0

Potassium binding site 4 out of 16 in 1t60

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Potassium binding site 4 out of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K5102

b:35.1
occ:1.00
 OH D:TYR189 2.8 18.0 1.0
OH F:TYR63 3.0 16.4 1.0
N B:ALA186 3.4 16.5 1.0
CZ D:TYR189 3.4 19.4 1.0
ND2 F:ASN65 3.5 26.4 1.0
CE1 F:TYR63 3.5 13.9 1.0
CE2 D:TYR189 3.7 19.3 1.0
CB B:ALA186 3.7 18.7 1.0
CZ F:TYR63 3.7 15.0 1.0
CB B:TYR185 4.0 13.3 1.0
CA B:ALA186 4.1 16.6 1.0
CD2 B:TYR185 4.1 11.8 1.0
NH1 F:ARG75 4.2 11.3 1.0
CE2 F:TYR71 4.2 32.5 1.0
C B:TYR185 4.2 16.0 1.0
CA B:TYR185 4.3 14.7 1.0
CD2 F:TYR71 4.3 29.6 1.0
N B:ASN187 4.4 15.4 1.0
CE1 D:TYR189 4.4 17.7 1.0
CG F:ASN65 4.4 24.7 1.0
CB F:ASN65 4.5 19.7 1.0
CG B:TYR185 4.5 12.1 1.0
C B:ALA186 4.7 16.2 1.0
CD1 F:TYR63 4.8 14.0 1.0
CD2 D:TYR189 4.9 19.1 1.0
OD1 B:ASN187 4.9 16.5 1.0

Potassium binding site 5 out of 16 in 1t60

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Potassium binding site 5 out of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K5103

b:34.8
occ:1.00
 OH G:TYR189 2.7 15.9 1.0
OH I:TYR63 3.0 16.8 1.0
ND2 I:ASN65 3.3 27.6 1.0
N K:ALA186 3.4 16.4 1.0
CZ G:TYR189 3.4 16.5 1.0
CE1 I:TYR63 3.6 13.8 1.0
CB K:ALA186 3.6 18.4 1.0
CE2 G:TYR189 3.7 15.5 1.0
CZ I:TYR63 3.7 14.5 1.0
CB K:TYR185 4.0 14.7 1.0
CD2 K:TYR185 4.0 12.8 1.0
CA K:ALA186 4.0 17.6 1.0
CE2 I:TYR71 4.1 33.4 1.0
NH1 I:ARG75 4.1 10.7 1.0
C K:TYR185 4.2 15.8 1.0
CA K:TYR185 4.2 14.9 1.0
CD2 I:TYR71 4.3 30.0 1.0
CG I:ASN65 4.3 25.2 1.0
CE1 G:TYR189 4.4 16.3 1.0
N K:ASN187 4.4 16.2 1.0
CG K:TYR185 4.5 13.8 1.0
CB I:ASN65 4.6 20.3 1.0
C K:ALA186 4.7 17.2 1.0
CD1 I:TYR63 4.8 14.1 1.0
CD2 G:TYR189 4.9 15.9 1.0

Potassium binding site 6 out of 16 in 1t60

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Potassium binding site 6 out of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K5111

b:21.1
occ:1.00
 O H:HOH5152 3.1 22.6 1.0
O L:HOH5259 3.1 28.6 1.0
ND2 H:ASN66 3.2 20.2 1.0
OH I:TYR187 3.2 13.7 1.0
N L:ALA184 3.2 13.5 1.0
CD2 L:TYR183 3.6 14.7 1.0
CE2 I:TYR187 3.6 16.2 1.0
CA L:TYR183 3.7 14.9 1.0
CB L:TYR183 3.8 14.4 1.0
CZ I:TYR187 3.9 15.2 1.0
CE1 H:PHE64 3.9 16.0 1.0
CB H:ASN66 3.9 17.2 1.0
C L:TYR183 4.0 14.6 1.0
CB L:ALA184 4.0 12.1 1.0
CG H:ASN66 4.0 18.3 1.0
CG L:TYR183 4.2 16.4 1.0
ND2 H:ASN72 4.2 20.4 1.0
CA L:ALA184 4.2 13.5 1.0
CE2 L:TYR183 4.6 16.5 1.0
CD1 H:PHE64 4.7 15.6 1.0
CZ H:PHE64 4.8 14.1 1.0
CD2 I:TYR187 4.9 16.6 1.0
O L:TYR182 4.9 17.6 1.0
O L:HOH5271 5.0 27.0 1.0

Potassium binding site 7 out of 16 in 1t60

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Potassium binding site 7 out of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
probe atom residue distance (Å) B Occ
I:K5112

b:21.5
occ:1.00
 OH L:TYR187 3.0 15.6 1.0
O K:HOH294 3.1 24.4 1.0
N I:ALA184 3.1 15.4 1.0
ND2 K:ASN66 3.2 20.6 1.0
CE2 L:TYR187 3.6 15.6 1.0
CB I:ALA184 3.6 16.3 1.0
CD2 I:TYR183 3.7 16.6 1.0
CZ L:TYR187 3.8 14.9 1.0
CA I:TYR183 3.9 14.9 1.0
CB I:TYR183 3.9 15.0 1.0
CE1 K:PHE64 3.9 16.1 1.0
C I:TYR183 4.0 15.8 1.0
CA I:ALA184 4.0 16.0 1.0
ND2 K:ASN72 4.0 23.9 1.0
CB K:ASN66 4.0 18.7 1.0
CG K:ASN66 4.1 19.8 1.0
CG I:TYR183 4.3 17.3 1.0
CD1 K:PHE64 4.7 15.8 1.0
CE2 I:TYR183 4.8 17.6 1.0
CZ K:PHE64 4.8 15.4 1.0
CD2 L:TYR187 4.9 15.1 1.0
O K:HOH290 4.9 27.3 1.0

Potassium binding site 8 out of 16 in 1t60

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Potassium binding site 8 out of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
probe atom residue distance (Å) B Occ
L:K5104

b:27.4
occ:1.00
 OH J:TYR189 2.9 18.1 1.0
OH L:TYR63 2.9 14.2 1.0
ND2 L:ASN65 3.3 23.5 1.0
N H:ALA186 3.3 16.6 1.0
CZ J:TYR189 3.5 16.2 1.0
CE1 L:TYR63 3.5 14.6 1.0
CZ L:TYR63 3.7 14.3 1.0
CB H:ALA186 3.7 14.5 1.0
CE2 J:TYR189 3.9 13.9 1.0
CE2 L:TYR71 3.9 23.6 1.0
CB H:TYR185 3.9 15.1 1.0
CD2 H:TYR185 3.9 15.3 1.0
NH1 L:ARG75 4.1 14.7 1.0
CD2 L:TYR71 4.1 21.5 1.0
CA H:ALA186 4.1 16.1 1.0
CA H:TYR185 4.1 15.2 1.0
C H:TYR185 4.2 15.2 1.0
CG L:ASN65 4.3 24.0 1.0
CE1 J:TYR189 4.4 16.6 1.0
CG H:TYR185 4.4 15.2 1.0
CB L:ASN65 4.4 23.0 1.0
N H:ASN187 4.6 16.2 1.0
C H:ALA186 4.8 16.5 1.0
CD1 L:TYR63 4.9 14.2 1.0
CD2 J:TYR189 4.9 15.0 1.0

Potassium binding site 9 out of 16 in 1t60

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Potassium binding site 9 out of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
probe atom residue distance (Å) B Occ
M:K5105

b:42.1
occ:1.00
 OH M:TYR189 2.7 21.6 1.0
ND2 O:ASN65 3.2 30.7 1.0
OH O:TYR63 3.3 18.4 1.0
CZ M:TYR189 3.4 22.0 1.0
N Q:ALA186 3.4 18.6 1.0
CE1 O:TYR63 3.6 14.6 1.0
CB Q:ALA186 3.7 19.9 1.0
CE2 M:TYR189 3.7 20.9 1.0
CZ O:TYR63 4.0 16.8 1.0
CA Q:ALA186 4.0 18.4 1.0
CE2 O:TYR71 4.1 37.0 1.0
CB Q:TYR185 4.1 15.1 1.0
NH1 O:ARG75 4.1 11.9 1.0
CG O:ASN65 4.2 29.2 1.0
C Q:TYR185 4.2 17.0 1.0
N Q:ASN187 4.3 18.4 1.0
CD2 Q:TYR185 4.3 17.0 1.0
CA Q:TYR185 4.3 16.6 1.0
CE1 M:TYR189 4.4 19.5 1.0
CB O:ASN65 4.4 26.0 1.0
CD2 O:TYR71 4.5 32.2 1.0
C Q:ALA186 4.6 18.7 1.0
CG Q:TYR185 4.7 16.6 1.0
OD1 Q:ASN187 4.8 17.4 1.0
CD2 M:TYR189 4.8 20.0 1.0
CD1 O:TYR63 4.9 15.4 1.0
CZ O:TYR71 5.0 38.9 1.0

Potassium binding site 10 out of 16 in 1t60

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Potassium binding site 10 out of 16 in the Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Crystal Structure of Type IV Collagen NC1 Domain From Bovine Lens Capsule within 5.0Å range:
probe atom residue distance (Å) B Occ
N:K5113

b:15.9
occ:1.00
 N R:ALA184 3.1 12.8 1.0
OH O:TYR187 3.2 11.6 1.0
O R:HOH5256 3.2 22.1 1.0
ND2 N:ASN66 3.3 13.8 1.0
O N:HOH5141 3.3 21.4 1.0
CE2 O:TYR187 3.7 14.3 1.0
CD2 R:TYR183 3.7 14.0 1.0
CB R:ALA184 3.7 13.9 1.0
CA R:TYR183 3.8 12.7 1.0
CZ O:TYR187 3.8 12.9 1.0
CB R:TYR183 3.8 12.6 1.0
CE1 N:PHE64 3.9 17.2 1.0
ND2 N:ASN72 3.9 21.2 1.0
C R:TYR183 3.9 12.9 1.0
CA R:ALA184 4.0 12.6 1.0
CB N:ASN66 4.0 13.7 1.0
CG N:ASN66 4.2 16.8 1.0
CG R:TYR183 4.3 13.1 1.0
CD1 N:PHE64 4.7 14.8 1.0
CZ N:PHE64 4.7 14.9 1.0
CE2 R:TYR183 4.8 16.9 1.0
O R:HOH5269 4.8 23.2 1.0
CD2 O:TYR187 4.9 14.3 1.0

Reference:

R.M.Vanacore, S.Shanmugasundararaj, D.B.Friedman, O.Bondar, B.G.Hudson, M.Sundaramoorthy. The ALPHA1.ALPHA2 Network of Collagen IV. Reinforced Stabilization of the Noncollagenous Domain-1 By Noncovalent Forces and the Absence of Met-Lys Cross-Links J.Biol.Chem. V. 279 44723 2004.
ISSN: ISSN 0021-9258
PubMed: 15299013
DOI: 10.1074/JBC.M406344200
Page generated: Mon Aug 12 05:24:18 2024

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