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Potassium in PDB 1t36: Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate

Enzymatic activity of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate

All present enzymatic activity of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate:
6.3.5.5;

Protein crystallography data

The structure of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate, PDB code: 1t36 was solved by J.B.Thoden, X.Huang, F.M.Raushel, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 152.500, 164.900, 333.100, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1t36:

The structure of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate also contains other interesting chemical elements:

Manganese (Mn) 12 atoms
Chlorine (Cl) 27 atoms

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Potassium atom in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate (pdb code 1t36). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 22 binding sites of Potassium where determined in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate, PDB code: 1t36:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 22 in 1t36

Go back to Potassium Binding Sites List in 1t36
Potassium binding site 1 out of 22 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1076

b:21.8
occ:1.00
 O A:ILE242 2.5 21.4 1.0
OE2 A:GLU215 2.7 31.2 1.0
OG A:SER247 2.8 20.6 1.0
O A:ALA239 2.8 23.4 1.0
O A:ASP238 2.8 16.6 1.0
OD1 A:ASN236 2.9 25.7 1.0
C A:ALA239 3.5 22.5 1.0
C A:ASP238 3.6 32.4 1.0
C A:ILE242 3.7 26.7 1.0
CG A:ASN236 3.7 28.7 1.0
CD A:GLU215 3.7 32.0 1.0
CB A:ASN236 3.8 16.6 1.0
CB A:SER247 3.9 15.1 1.0
CB A:GLU215 4.1 15.4 1.0
CG A:GLU215 4.2 22.8 1.0
N A:ALA239 4.2 20.2 1.0
CA A:ALA239 4.2 24.1 1.0
CB A:ASP238 4.3 11.4 1.0
N A:MET240 4.3 25.4 1.0
O2' A:ADP1087 4.3 19.0 1.0
CB A:ILE242 4.4 23.2 1.0
CA A:ILE242 4.4 21.1 1.0
C A:HIS243 4.4 22.5 1.0
N A:ILE242 4.4 22.3 1.0
N A:THR244 4.5 23.8 1.0
CA A:ASP238 4.5 20.8 1.0
O A:HIS243 4.5 26.0 1.0
CA A:MET240 4.6 20.3 1.0
CA A:THR244 4.6 19.8 1.0
OE1 A:GLU215 4.6 26.3 1.0
N A:HIS243 4.8 17.6 1.0
CG2 A:ILE242 4.8 15.7 1.0
ND2 A:ASN236 4.9 21.6 1.0

Potassium binding site 2 out of 22 in 1t36

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Potassium binding site 2 out of 22 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1077

b:27.5
occ:1.00
 O A:HOH1607 2.4 52.4 1.0
O A:MET300 2.6 26.3 1.0
OE1 A:GLU127 2.8 22.9 1.0
OE1 A:GLU299 2.8 32.5 1.0
O A:HOH1193 2.9 27.7 1.0
O A:HOH1191 3.2 24.8 1.0
OD1 A:ASN301 3.3 23.3 1.0
O A:ALA126 3.3 32.4 1.0
CD A:GLU127 3.6 30.2 1.0
C A:MET300 3.7 23.9 1.0
MN A:MN1074 3.8 25.0 1.0
CD A:GLU299 3.9 37.8 1.0
O A:HOH1192 4.0 37.6 1.0
C A:ALA126 4.1 48.4 1.0
OE2 A:GLU127 4.1 23.8 1.0
CG A:ASN301 4.1 23.6 1.0
N A:MET300 4.3 25.8 1.0
NH1 A:ARG129 4.4 24.8 1.0
CB A:GLU299 4.4 18.8 1.0
CA A:ASN301 4.4 24.8 1.0
N A:ASN301 4.4 18.5 1.0
CA A:GLU127 4.5 14.9 1.0
O A:HOH1168 4.5 29.0 1.0
N A:GLU127 4.6 27.6 1.0
CZ A:ARG129 4.6 45.5 1.0
CG A:GLU127 4.6 16.5 1.0
CA A:MET300 4.7 24.2 1.0
CG A:GLU299 4.7 12.7 1.0
NH2 A:ARG129 4.7 29.3 1.0
OE2 A:GLU299 4.7 18.0 1.0
O3B A:ADP1087 4.8 27.7 1.0
CB A:ASN301 4.8 21.4 1.0
CD A:PRO302 4.8 32.7 1.0
CB A:ALA126 4.8 25.2 1.0
ND2 A:ASN301 5.0 21.6 1.0

Potassium binding site 3 out of 22 in 1t36

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Potassium binding site 3 out of 22 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1080

b:29.8
occ:1.00
 O A:VAL787 2.6 24.2 1.0
OE2 A:GLU761 2.6 26.2 1.0
ND1 A:HIS781 2.7 31.3 1.0
OG A:SER792 2.8 30.1 1.0
O A:GLN784 2.8 24.1 1.0
O A:GLU783 2.9 30.9 1.0
C A:GLN784 3.5 27.1 1.0
CB A:GLU761 3.5 32.4 1.0
C A:GLU783 3.6 15.0 1.0
CD A:GLU761 3.6 57.5 1.0
CE1 A:HIS781 3.6 28.9 1.0
CG A:HIS781 3.7 30.0 1.0
C A:VAL787 3.8 29.0 1.0
CB A:HIS781 3.8 26.5 1.0
CB A:SER792 3.9 15.5 1.0
N A:ALA785 4.0 19.7 1.0
CA A:ALA785 4.1 26.1 1.0
CG A:GLU761 4.2 20.4 1.0
N A:GLN784 4.2 30.8 1.0
CB A:VAL787 4.3 31.2 1.0
O2' A:ADP1088 4.3 31.2 1.0
N A:VAL787 4.3 19.9 1.0
CA A:GLN784 4.3 23.9 1.0
CB A:GLU783 4.3 30.5 1.0
O A:HIS788 4.4 33.1 1.0
CA A:VAL787 4.4 26.6 1.0
OE1 A:GLU761 4.5 34.6 1.0
C A:HIS788 4.5 28.0 1.0
CA A:GLU783 4.5 21.5 1.0
N A:SER789 4.6 26.9 1.0
CG1 A:VAL787 4.6 19.1 1.0
CA A:SER789 4.6 24.3 1.0
O A:HOH1529 4.8 21.3 1.0
N A:GLY786 4.8 28.1 1.0
C A:ALA785 4.8 37.1 1.0
NE2 A:HIS781 4.8 25.4 1.0
CD2 A:HIS781 4.8 23.8 1.0
CA A:GLU761 4.9 31.5 1.0
N A:HIS788 4.9 22.9 1.0

Potassium binding site 4 out of 22 in 1t36

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Potassium binding site 4 out of 22 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1082

b:41.2
occ:1.00
 O A:HOH1202 2.4 29.8 1.0
OG1 A:THR143 2.6 38.5 1.0
O A:HOH1203 2.8 39.5 1.0
O A:THR143 2.8 33.8 1.0
O A:HOH1204 2.9 29.9 1.0
O A:ALA144 3.1 25.3 1.0
C A:THR143 3.5 35.2 1.0
C A:ALA144 3.5 33.5 1.0
O A:HOH1207 3.8 41.9 1.0
CB A:THR143 3.8 33.9 1.0
N A:ARG145 4.0 28.6 1.0
CA A:ARG145 4.0 22.3 1.0
CA A:THR143 4.1 29.7 1.0
O A:HOH1206 4.1 36.9 1.0
O A:HOH1617 4.2 77.5 1.0
N A:ALA144 4.3 24.9 1.0
N A:THR143 4.3 28.2 1.0
CA A:ALA144 4.5 31.3 1.0
OD2 A:ASP133 4.5 55.7 1.0
O A:HOH1229 4.5 36.1 1.0
O A:HOH1201 4.6 30.1 1.0
OD1 A:ASP133 4.7 52.8 1.0
N A:SER146 4.7 34.6 1.0
C A:ARG145 4.8 32.0 1.0
O A:HOH1205 4.8 27.6 1.0
CG2 A:THR143 4.9 24.6 1.0
OG A:SER146 4.9 36.8 1.0

Potassium binding site 5 out of 22 in 1t36

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Potassium binding site 5 out of 22 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K383

b:45.8
occ:1.00
 O B:HOH3605 2.7 45.7 1.0
O B:ASP112 2.7 31.1 1.0
O B:HIS16 2.8 46.3 1.0
O A:HOH1457 2.8 29.4 1.0
O A:HOH1456 2.9 39.7 1.0
O B:HOH3394 3.0 52.3 1.0
C B:ASP112 3.9 34.3 1.0
C B:HIS16 4.0 35.5 1.0
NH2 A:ARG494 4.3 19.9 1.0
CA B:GLY17 4.3 21.1 1.0
O A:HOH1455 4.3 28.5 1.0
O B:HOH3393 4.5 36.7 1.0
CA B:ILE113 4.5 29.8 1.0
CB B:ASP112 4.5 23.9 1.0
CZ A:ARG494 4.5 32.8 1.0
O B:HOH3943 4.6 12.3 1.0
N B:GLY17 4.6 43.3 1.0
NH1 A:ARG494 4.6 25.5 1.0
N B:ILE113 4.7 17.1 1.0
O A:HOH1633 4.7 48.4 1.0
CA B:ASP112 4.9 35.5 1.0
CG2 B:ILE113 4.9 29.0 1.0
O A:HOH1635 4.9 74.6 1.0

Potassium binding site 6 out of 22 in 1t36

Go back to Potassium Binding Sites List in 1t36
Potassium binding site 6 out of 22 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1076

b:22.0
occ:1.00
 OE2 C:GLU215 2.6 20.8 1.0
O C:ASP238 2.6 19.6 1.0
O C:ILE242 2.7 20.5 1.0
O C:ALA239 2.7 24.2 1.0
OG C:SER247 2.8 15.8 1.0
OD1 C:ASN236 2.9 30.8 1.0
C C:ALA239 3.5 25.7 1.0
C C:ASP238 3.5 30.9 1.0
CG C:ASN236 3.6 21.6 1.0
CD C:GLU215 3.6 24.6 1.0
CB C:ASN236 3.7 11.9 1.0
C C:ILE242 3.8 19.4 1.0
CB C:SER247 3.8 17.4 1.0
CB C:GLU215 4.0 16.5 1.0
CG C:GLU215 4.0 23.5 1.0
N C:ALA239 4.2 21.9 1.0
CA C:ALA239 4.3 19.4 1.0
O C:HIS243 4.3 22.6 1.0
O2' C:ADP1089 4.3 23.9 1.0
CB C:ASP238 4.3 18.6 1.0
N C:ILE242 4.3 24.6 1.0
C C:HIS243 4.3 28.7 1.0
N C:MET240 4.4 23.0 1.0
CB C:ILE242 4.4 24.2 1.0
CA C:ILE242 4.4 20.0 1.0
N C:THR244 4.4 22.2 1.0
CA C:ASP238 4.4 25.1 1.0
CA C:THR244 4.5 22.1 1.0
OE1 C:GLU215 4.6 23.0 1.0
CA C:MET240 4.6 21.7 1.0
N C:HIS243 4.8 17.7 1.0
ND2 C:ASN236 4.9 24.9 1.0
CG2 C:THR244 4.9 12.1 1.0
CG2 C:ILE242 4.9 18.7 1.0

Potassium binding site 7 out of 22 in 1t36

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Potassium binding site 7 out of 22 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1077

b:27.1
occ:1.00
 OE1 C:GLU127 2.7 35.0 1.0
O C:MET300 2.8 20.8 1.0
OE1 C:GLU299 2.8 27.5 1.0
O C:HOH1193 2.8 29.5 1.0
O C:ALA126 3.2 35.8 1.0
O C:HOH1191 3.5 29.8 1.0
OD1 C:ASN301 3.5 29.6 1.0
O C:HOH1192 3.5 28.2 1.0
CD C:GLU127 3.6 33.0 1.0
MN C:MN1074 3.8 27.1 1.0
C C:MET300 3.9 27.4 1.0
CD C:GLU299 3.9 45.3 1.0
C C:ALA126 4.0 27.1 1.0
N C:MET300 4.3 20.1 1.0
CA C:GLU127 4.3 17.4 1.0
OE2 C:GLU127 4.3 25.9 1.0
CG C:ASN301 4.3 14.7 1.0
CB C:GLU299 4.4 24.8 1.0
CA C:ASN301 4.5 25.3 1.0
N C:GLU127 4.5 28.9 1.0
N C:ASN301 4.6 23.2 1.0
O C:HOH1170 4.6 26.8 1.0
NH1 C:ARG129 4.6 27.2 1.0
CG C:GLU127 4.7 21.3 1.0
CG C:GLU299 4.7 18.8 1.0
OE2 C:GLU299 4.7 22.1 1.0
CD C:PRO302 4.7 31.8 1.0
NH2 C:ARG129 4.7 32.7 1.0
CZ C:ARG129 4.8 42.3 1.0
CA C:MET300 4.8 14.1 1.0
O3B C:ADP1089 4.8 22.5 1.0
CB C:ALA126 4.9 23.9 1.0
CB C:ASN301 4.9 15.1 1.0

Potassium binding site 8 out of 22 in 1t36

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Potassium binding site 8 out of 22 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1080

b:36.5
occ:1.00
 O C:VAL787 2.6 28.1 1.0
ND1 C:HIS781 2.7 35.7 1.0
OG C:SER792 2.7 29.8 1.0
OE2 C:GLU761 2.8 42.8 1.0
O C:GLU783 2.8 30.4 1.0
O C:GLN784 3.0 35.8 1.0
C C:GLN784 3.4 29.8 1.0
C C:GLU783 3.6 33.4 1.0
CB C:GLU761 3.6 32.1 1.0
CG C:HIS781 3.6 30.6 1.0
CD C:GLU761 3.7 38.4 1.0
CB C:SER792 3.7 24.4 1.0
CE1 C:HIS781 3.7 28.3 1.0
CB C:HIS781 3.8 29.9 1.0
C C:VAL787 3.8 28.6 1.0
N C:ALA785 4.0 40.2 1.0
CG C:GLU761 4.1 40.3 1.0
CA C:ALA785 4.1 37.0 1.0
N C:GLN784 4.2 30.6 1.0
O2' C:ADP1090 4.2 35.1 1.0
CA C:GLN784 4.3 33.7 1.0
CB C:VAL787 4.4 43.4 1.0
CB C:GLU783 4.4 26.9 1.0
CA C:GLU783 4.4 23.3 1.0
O C:HIS788 4.5 32.7 1.0
CA C:VAL787 4.5 38.5 1.0
C C:HIS788 4.5 51.4 1.0
N C:VAL787 4.5 39.1 1.0
N C:SER789 4.5 38.3 1.0
OE1 C:GLU761 4.5 34.9 1.0
O C:HOH1521 4.6 38.1 1.0
CA C:SER789 4.6 26.8 1.0
C C:ALA785 4.8 39.9 1.0
NE2 C:HIS781 4.8 33.2 1.0
CD2 C:HIS781 4.8 25.7 1.0
N C:GLY786 4.8 43.8 1.0
CG1 C:VAL787 4.9 23.3 1.0
N C:HIS788 4.9 23.7 1.0
CA C:GLU761 4.9 36.7 1.0
N C:GLU783 5.0 30.9 1.0

Potassium binding site 9 out of 22 in 1t36

Go back to Potassium Binding Sites List in 1t36
Potassium binding site 9 out of 22 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1082

b:44.7
occ:1.00
 O C:HOH1201 2.5 30.5 1.0
O C:HOH1202 2.9 63.3 1.0
O C:ALA144 3.0 26.8 1.0
OG1 C:THR143 3.0 38.0 1.0
O C:THR143 3.0 28.0 1.0
O C:HOH1203 3.1 34.2 1.0
O C:HOH1206 3.3 41.4 1.0
C C:ALA144 3.5 40.5 1.0
C C:THR143 3.5 23.0 1.0
N C:ARG145 3.9 24.8 1.0
CA C:ARG145 4.0 23.0 1.0
CB C:THR143 4.0 34.9 1.0
CA C:THR143 4.0 22.0 1.0
N C:ALA144 4.2 22.3 1.0
O C:HOH1227 4.3 37.2 1.0
O C:HOH1205 4.3 37.4 1.0
N C:THR143 4.4 26.2 1.0
CA C:ALA144 4.4 23.2 1.0
O C:HOH1200 4.4 33.6 1.0
O C:HOH1204 4.5 43.8 1.0
OD2 C:ASP133 4.5 44.0 1.0
OD1 C:ASP133 4.7 51.4 1.0
N C:SER146 4.8 27.6 1.0
C C:ARG145 4.8 23.5 1.0
OG C:SER146 4.9 35.1 1.0

Potassium binding site 10 out of 22 in 1t36

Go back to Potassium Binding Sites List in 1t36
Potassium binding site 10 out of 22 in the Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Crystal Structure of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248D Complexed with Uridine 5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K383

b:34.9
occ:1.00
 O D:HOH2536 2.5 52.4 1.0
O D:HIS16 2.6 21.6 1.0
O C:HOH1451 2.7 32.1 1.0
O D:ASP112 2.7 28.6 1.0
O D:HOH2331 2.8 33.3 1.0
O C:HOH1452 3.4 28.8 1.0
C D:HIS16 3.8 29.7 1.0
C D:ASP112 3.9 40.9 1.0
O D:HOH2535 3.9 68.3 1.0
NH2 C:ARG494 4.2 24.4 1.0
CA D:GLY17 4.3 23.9 1.0
CA D:ILE113 4.5 36.9 1.0
O C:HOH1610 4.5 44.9 1.0
CL D:CL384 4.6 34.2 1.0
N D:GLY17 4.6 36.9 1.0
CZ C:ARG494 4.7 42.4 1.0
N D:ILE113 4.7 30.0 1.0
CB D:ASP112 4.7 21.8 1.0
O C:HOH1450 4.7 33.0 1.0
O D:HOH2330 4.8 38.3 1.0
CA D:HIS16 4.8 27.5 1.0
CG2 D:ILE113 4.8 21.5 1.0
CA D:ASP112 5.0 36.6 1.0
CB D:HIS16 5.0 31.9 1.0

Reference:

J.B.Thoden, X.Huang, J.Kim, F.M.Raushel, H.M.Holden. Long-Range Allosteric Transitions in Carbamoyl Phosphate Synthetase. Protein Sci. V. 13 2398 2004.
ISSN: ISSN 0961-8368
PubMed: 15322282
DOI: 10.1110/PS.04822704
Page generated: Mon Aug 12 05:23:20 2024

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