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Potassium in PDB 1sx3: GROEL14-(Atpgammas)14

Protein crystallography data

The structure of GROEL14-(Atpgammas)14, PDB code: 1sx3 was solved by C.Chaudhry, A.L.Horwich, A.T.Brunger, P.D.Adams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.84 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 135.571, 260.112, 150.200, 90.00, 101.14, 90.00
R / Rfree (%) 24.6 / 26.5

Other elements in 1sx3:

The structure of GROEL14-(Atpgammas)14 also contains other interesting chemical elements:

Magnesium (Mg) 14 atoms

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Potassium atom in the GROEL14-(Atpgammas)14 (pdb code 1sx3). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 16 binding sites of Potassium where determined in the GROEL14-(Atpgammas)14, PDB code: 1sx3:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 16 in 1sx3

Go back to Potassium Binding Sites List in 1sx3
Potassium binding site 1 out of 16 in the GROEL14-(Atpgammas)14


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of GROEL14-(Atpgammas)14 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K560

b:14.0
occ:1.00
 O A:HOH563 2.4 11.2 1.0
O A:HOH564 2.4 25.1 1.0
O A:THR30 2.5 9.3 1.0
O A:LYS51 2.5 12.8 1.0
O A:HOH565 2.5 11.1 1.0
O A:HOH566 2.5 14.2 1.0
O1A A:AGS1 2.7 9.4 1.0
C A:THR30 3.7 12.1 1.0
C A:LYS51 3.8 12.8 1.0
PA A:AGS1 3.8 14.1 1.0
OG1 A:THR30 4.0 10.7 1.0
CB A:THR30 4.0 11.2 1.0
O2A A:AGS1 4.2 4.3 1.0
N A:GLY32 4.4 9.6 1.0
CB A:LYS51 4.4 12.6 1.0
CA A:THR30 4.5 10.6 1.0
O3A A:AGS1 4.5 18.3 1.0
CA A:LEU31 4.5 11.3 1.0
N A:LEU31 4.6 10.8 1.0
CA A:ASP52 4.6 13.9 1.0
S1G A:AGS1 4.6 20.5 1.0
CA A:LYS51 4.6 12.9 1.0
N A:ASP52 4.7 13.3 1.0
O A:GLY32 4.7 13.1 1.0
C A:LEU31 4.8 11.1 1.0
O3G A:AGS1 4.9 13.6 1.0
N A:GLY53 4.9 15.6 1.0

Potassium binding site 2 out of 16 in 1sx3

Go back to Potassium Binding Sites List in 1sx3
Potassium binding site 2 out of 16 in the GROEL14-(Atpgammas)14


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of GROEL14-(Atpgammas)14 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K560

b:13.6
occ:1.00
 O B:HOH565 2.1 14.0 1.0
O B:HOH563 2.3 14.9 1.0
O B:HOH566 2.3 14.6 1.0
O B:HOH564 2.3 15.0 1.0
O B:LYS51 2.5 12.6 1.0
O1A B:AGS1 2.5 12.2 1.0
O B:THR30 2.5 9.5 1.0
C B:LYS51 3.6 12.8 1.0
C B:THR30 3.7 11.7 1.0
PA B:AGS1 3.7 13.3 1.0
CB B:THR30 4.0 10.7 1.0
O2A B:AGS1 4.1 9.9 1.0
CB B:LYS51 4.1 12.6 1.0
OG1 B:THR30 4.1 11.3 1.0
O3A B:AGS1 4.3 16.3 1.0
N B:GLY32 4.4 10.0 1.0
CA B:THR30 4.5 10.7 1.0
CA B:ASP52 4.5 14.1 1.0
CA B:LYS51 4.5 13.0 1.0
N B:ASP52 4.5 13.6 1.0
CA B:LEU31 4.6 11.0 1.0
N B:LEU31 4.6 10.7 1.0
O3G B:AGS1 4.8 21.9 1.0
S1G B:AGS1 4.8 19.6 1.0
C B:LEU31 4.8 11.3 1.0
O5' B:AGS1 4.8 18.1 1.0
N B:GLY53 4.8 15.4 1.0
O B:GLY32 4.9 13.5 1.0

Potassium binding site 3 out of 16 in 1sx3

Go back to Potassium Binding Sites List in 1sx3
Potassium binding site 3 out of 16 in the GROEL14-(Atpgammas)14


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of GROEL14-(Atpgammas)14 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K560

b:19.9
occ:1.00
 O C:HOH566 1.3 51.9 1.0
O C:HOH563 2.3 9.8 1.0
O1A C:AGS1 2.4 9.4 1.0
O C:THR30 2.5 9.7 1.0
O C:HOH564 2.6 17.7 1.0
O C:LYS51 2.6 12.2 1.0
O C:HOH567 2.7 17.0 1.0
O C:HOH565 2.9 15.6 1.0
PA C:AGS1 3.6 10.2 1.0
C C:THR30 3.6 12.3 1.0
C C:LYS51 3.8 12.6 1.0
CB C:THR30 4.1 10.7 1.0
OG1 C:THR30 4.1 11.9 1.0
O3A C:AGS1 4.3 12.3 1.0
N C:GLY32 4.3 10.6 1.0
O2A C:AGS1 4.3 9.3 1.0
CB C:LYS51 4.4 12.5 1.0
CA C:LEU31 4.5 10.9 1.0
CA C:THR30 4.5 10.8 1.0
N C:LEU31 4.6 11.8 1.0
CA C:ASP52 4.6 14.1 1.0
CA C:LYS51 4.7 12.6 1.0
O3G C:AGS1 4.7 14.4 1.0
N C:ASP52 4.7 13.4 1.0
S1G C:AGS1 4.7 15.9 1.0
C C:LEU31 4.7 11.4 1.0
O C:GLY32 4.7 13.5 1.0
O5' C:AGS1 4.8 13.0 1.0
N C:GLY53 4.9 14.8 1.0

Potassium binding site 4 out of 16 in 1sx3

Go back to Potassium Binding Sites List in 1sx3
Potassium binding site 4 out of 16 in the GROEL14-(Atpgammas)14


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of GROEL14-(Atpgammas)14 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K1

b:29.0
occ:1.00
 O D:SER135 2.6 15.0 1.0
O D:ALA133 2.8 11.6 1.0
O D:LYS132 3.0 13.4 1.0
C D:ALA133 3.5 13.1 1.0
C D:SER135 3.7 13.3 1.0
N D:SER135 3.9 14.6 1.0
CA D:ALA133 3.9 13.3 1.0
C D:LYS132 4.1 14.2 1.0
CB D:SER135 4.2 13.8 1.0
CA D:SER135 4.2 14.4 1.0
C D:LEU134 4.3 14.2 1.0
N D:LEU134 4.4 12.7 1.0
N D:ALA133 4.5 14.1 1.0
O D:LEU134 4.8 14.7 1.0
CA D:LEU134 4.8 13.9 1.0
N D:VAL136 4.9 12.5 1.0

Potassium binding site 5 out of 16 in 1sx3

Go back to Potassium Binding Sites List in 1sx3
Potassium binding site 5 out of 16 in the GROEL14-(Atpgammas)14


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of GROEL14-(Atpgammas)14 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K560

b:16.1
occ:1.00
 O D:HOH567 2.3 14.8 1.0
O D:THR30 2.4 9.7 1.0
O D:HOH564 2.5 11.9 1.0
O D:LYS51 2.5 12.8 1.0
O D:HOH565 2.6 22.1 1.0
O D:HOH566 2.6 10.3 1.0
O1A D:AGS561 2.6 11.1 1.0
C D:THR30 3.6 12.1 1.0
PA D:AGS561 3.7 11.9 1.0
C D:LYS51 3.7 12.9 1.0
OG1 D:THR30 4.0 11.5 1.0
CB D:THR30 4.1 11.1 1.0
CB D:LYS51 4.3 12.7 1.0
O2A D:AGS561 4.3 7.7 1.0
N D:GLY32 4.3 9.9 1.0
O3A D:AGS561 4.4 10.8 1.0
CA D:LEU31 4.4 11.8 1.0
N D:LEU31 4.4 10.6 1.0
CA D:THR30 4.5 10.2 1.0
O D:GLY32 4.6 13.5 1.0
S1G D:AGS561 4.6 19.0 1.0
CA D:LYS51 4.6 12.7 1.0
CA D:ASP52 4.6 14.1 1.0
N D:ASP52 4.6 13.6 1.0
C D:LEU31 4.7 10.9 1.0
O3G D:AGS561 4.8 18.5 1.0
O5' D:AGS561 4.9 11.0 1.0
N D:GLY53 4.9 15.6 1.0

Potassium binding site 6 out of 16 in 1sx3

Go back to Potassium Binding Sites List in 1sx3
Potassium binding site 6 out of 16 in the GROEL14-(Atpgammas)14


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of GROEL14-(Atpgammas)14 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K527

b:31.6
occ:1.00
 O E:SER135 2.5 14.1 1.0
O E:ALA133 2.7 12.9 1.0
O E:LYS132 2.8 12.8 1.0
C E:ALA133 3.4 13.7 1.0
C E:SER135 3.6 12.8 1.0
N E:SER135 3.7 14.0 1.0
CA E:ALA133 3.8 14.0 1.0
CB E:SER135 3.9 13.1 1.0
CA E:SER135 3.9 14.9 1.0
C E:LYS132 3.9 14.2 1.0
C E:LEU134 4.2 14.6 1.0
N E:LEU134 4.2 13.7 1.0
N E:ALA133 4.4 14.1 1.0
O E:HOH618 4.4 28.4 1.0
CA E:LEU134 4.6 14.2 1.0
N E:VAL136 4.8 12.4 1.0
O E:LEU134 4.8 15.7 1.0

Potassium binding site 7 out of 16 in 1sx3

Go back to Potassium Binding Sites List in 1sx3
Potassium binding site 7 out of 16 in the GROEL14-(Atpgammas)14


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of GROEL14-(Atpgammas)14 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K560

b:11.8
occ:1.00
 O E:HOH563 2.1 16.0 1.0
O E:HOH566 2.3 2.0 1.0
O E:HOH565 2.4 12.4 1.0
O E:HOH564 2.4 16.0 1.0
O E:LYS51 2.5 12.7 1.0
O E:THR30 2.5 9.1 1.0
O1A E:AGS1 2.6 8.7 1.0
C E:LYS51 3.7 12.9 1.0
C E:THR30 3.8 12.4 1.0
PA E:AGS1 3.8 19.4 1.0
O2A E:AGS1 4.1 2.0 1.0
OG1 E:THR30 4.1 11.8 1.0
CB E:THR30 4.2 10.8 1.0
CB E:LYS51 4.2 12.2 1.0
N E:GLY32 4.3 9.8 1.0
O3A E:AGS1 4.4 19.2 1.0
CA E:LYS51 4.5 12.9 1.0
CA E:THR30 4.6 10.8 1.0
S1G E:AGS1 4.6 20.6 1.0
CA E:ASP52 4.6 13.8 1.0
CA E:LEU31 4.6 11.8 1.0
N E:ASP52 4.6 13.7 1.0
N E:LEU31 4.7 10.6 1.0
O E:GLY32 4.7 13.3 1.0
C E:LEU31 4.8 11.6 1.0
O3G E:AGS1 4.8 11.3 1.0
O5' E:AGS1 4.9 13.8 1.0
N E:GLY53 5.0 15.1 1.0

Potassium binding site 8 out of 16 in 1sx3

Go back to Potassium Binding Sites List in 1sx3
Potassium binding site 8 out of 16 in the GROEL14-(Atpgammas)14


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of GROEL14-(Atpgammas)14 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K560

b:13.4
occ:1.00
 O F:HOH563 2.3 7.2 1.0
O F:HOH565 2.4 16.2 1.0
O F:HOH566 2.4 8.0 1.0
O F:THR30 2.4 9.2 1.0
O F:LYS51 2.5 12.9 1.0
O F:HOH564 2.5 31.5 1.0
O1A F:AGS1 2.6 12.5 1.0
C F:THR30 3.7 11.6 1.0
C F:LYS51 3.7 12.7 1.0
PA F:AGS1 3.8 11.0 1.0
CB F:THR30 4.0 10.7 1.0
OG1 F:THR30 4.0 10.3 1.0
O2A F:AGS1 4.2 2.0 1.0
CB F:LYS51 4.3 13.0 1.0
N F:GLY32 4.4 10.9 1.0
O3A F:AGS1 4.4 15.5 1.0
CA F:THR30 4.5 10.3 1.0
CA F:ASP52 4.5 14.3 1.0
N F:ASP52 4.5 13.6 1.0
N F:LEU31 4.6 10.4 1.0
CA F:LYS51 4.6 12.9 1.0
CA F:LEU31 4.6 11.1 1.0
S1G F:AGS1 4.6 23.7 1.0
O3G F:AGS1 4.6 22.4 1.0
O F:GLY32 4.8 13.6 1.0
C F:LEU31 4.8 10.6 1.0
N F:GLY53 4.9 15.1 1.0
O5' F:AGS1 5.0 13.9 1.0

Potassium binding site 9 out of 16 in 1sx3

Go back to Potassium Binding Sites List in 1sx3
Potassium binding site 9 out of 16 in the GROEL14-(Atpgammas)14


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of GROEL14-(Atpgammas)14 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K560

b:16.6
occ:1.00
 O G:HOH563 2.3 8.0 1.0
O G:HOH566 2.4 9.2 1.0
O1A G:AGS1 2.5 14.9 1.0
O G:LYS51 2.5 12.3 1.0
O G:HOH565 2.5 13.7 1.0
O G:THR30 2.6 10.7 1.0
O G:HOH564 2.7 22.3 1.0
PA G:AGS1 3.6 9.0 1.0
C G:LYS51 3.7 12.7 1.0
C G:THR30 3.7 11.9 1.0
OG1 G:THR30 4.1 10.6 1.0
O3A G:AGS1 4.2 10.7 1.0
CB G:THR30 4.2 11.1 1.0
O2A G:AGS1 4.2 11.8 1.0
CB G:LYS51 4.3 12.8 1.0
N G:GLY32 4.4 10.2 1.0
CA G:LEU31 4.5 10.8 1.0
CA G:ASP52 4.6 14.4 1.0
CA G:THR30 4.6 10.8 1.0
N G:LEU31 4.6 10.6 1.0
N G:ASP52 4.6 13.6 1.0
S1G G:AGS1 4.6 15.0 1.0
CA G:LYS51 4.6 13.2 1.0
O3G G:AGS1 4.6 16.8 1.0
O G:GLY32 4.7 13.7 1.0
C G:LEU31 4.8 10.7 1.0
O5' G:AGS1 4.8 8.7 1.0
N G:GLY53 4.9 15.2 1.0

Potassium binding site 10 out of 16 in 1sx3

Go back to Potassium Binding Sites List in 1sx3
Potassium binding site 10 out of 16 in the GROEL14-(Atpgammas)14


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of GROEL14-(Atpgammas)14 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K560

b:15.6
occ:1.00
 O H:HOH565 2.3 17.8 1.0
O H:HOH563 2.4 11.1 1.0
O H:HOH566 2.4 10.6 1.0
O H:LYS51 2.5 13.1 1.0
O H:THR30 2.6 8.1 1.0
O H:HOH564 2.6 20.1 1.0
O1A H:AGS1 2.7 11.3 1.0
PA H:AGS1 3.7 11.4 1.0
C H:LYS51 3.7 12.8 1.0
C H:THR30 3.8 12.1 1.0
OG1 H:THR30 4.1 9.0 1.0
CB H:THR30 4.1 10.3 1.0
O3A H:AGS1 4.2 8.6 1.0
O2A H:AGS1 4.2 10.8 1.0
N H:GLY32 4.4 9.0 1.0
S1G H:AGS1 4.5 17.6 1.0
CA H:ASP52 4.5 14.0 1.0
CB H:LYS51 4.5 12.6 1.0
CA H:LEU31 4.6 10.2 1.0
N H:ASP52 4.6 13.2 1.0
CA H:THR30 4.6 10.7 1.0
N H:LEU31 4.7 9.8 1.0
O3G H:AGS1 4.7 8.0 1.0
CA H:LYS51 4.7 13.2 1.0
O H:GLY32 4.7 11.9 1.0
O5' H:AGS1 4.8 14.5 1.0
C H:LEU31 4.8 10.3 1.0
N H:GLY53 4.9 15.2 1.0

Reference:

C.Chaudhry, A.L.Horwich, A.T.Brunger, P.D.Adams. Exploring the Structural Dynamics of the E.Coli Chaperonin Groel Using Translation-Libration-Screw Crystallographic Refinement of Intermediate States. J.Mol.Biol. V. 342 229 2004.
ISSN: ISSN 0022-2836
PubMed: 15313620
DOI: 10.1016/J.JMB.2004.07.015
Page generated: Mon Aug 12 05:23:14 2024

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