Atomistry » Potassium » PDB 1pr9-1s61 » 1ry5
Atomistry »
  Potassium »
    PDB 1pr9-1s61 »
      1ry5 »

Potassium in PDB 1ry5: Photosynthetic Reaction Center Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn

Protein crystallography data

The structure of Photosynthetic Reaction Center Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn, PDB code: 1ry5 was solved by Q.Xu, H.L.Axelrod, E.C.Abresch, M.L.Paddock, M.Y.Okamura, G.Feher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.23 / 2.10
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 139.071, 139.071, 184.599, 90.00, 90.00, 120.00
R / Rfree (%) 21.1 / 22.6

Other elements in 1ry5:

The structure of Photosynthetic Reaction Center Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Iron (Fe) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Photosynthetic Reaction Center Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn (pdb code 1ry5). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Photosynthetic Reaction Center Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn, PDB code: 1ry5:

Potassium binding site 1 out of 1 in 1ry5

Go back to Potassium Binding Sites List in 1ry5
Potassium binding site 1 out of 1 in the Photosynthetic Reaction Center Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Photosynthetic Reaction Center Mutant From Rhodobacter Sphaeroides with Asp L213 Replaced with Asn within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K867

b:36.9
occ:1.00
O H:MET134 2.8 28.9 1.0
O H:ALA137 3.0 36.2 1.0
O H:PHE140 3.0 33.4 1.0
C H:ALA137 3.7 37.1 1.0
O H:HOH951 3.7 63.2 1.0
C H:MET134 3.8 31.1 1.0
N H:PHE140 3.9 36.4 1.0
C H:PHE140 4.0 33.0 1.0
N H:GLY139 4.2 38.1 1.0
N H:ALA137 4.2 36.9 1.0
CA H:PHE140 4.3 34.4 1.0
CG H:MET134 4.3 32.4 1.0
C H:LYS135 4.4 37.2 1.0
CA H:LYS135 4.4 36.5 1.0
O H:LYS135 4.4 39.3 1.0
N H:ALA138 4.4 38.6 1.0
CB H:PHE140 4.4 34.3 1.0
CA H:ALA137 4.5 36.5 1.0
CA H:ALA138 4.5 39.2 1.0
N H:LYS135 4.5 32.1 1.0
C H:ALA138 4.6 39.4 1.0
C H:GLY139 4.6 38.1 1.0
CB H:ALA137 4.8 36.0 1.0
CA H:MET134 4.8 29.9 1.0
CA H:GLY139 4.9 37.6 1.0
N H:ALA136 4.9 37.5 1.0

Reference:

Q.Xu, H.L.Axelrod, E.C.Abresch, M.L.Paddock, M.Y.Okamura, G.Feher. X-Ray Structure Determination of Three Mutants of the Bacterial Photosynthetic Reaction Centers From Rb. Sphaeroides; Altered Proton Transfer Pathways. Structure V. 12 703 2004.
ISSN: ISSN 0969-2126
PubMed: 15062092
DOI: 10.1016/J.STR.2004.03.001
Page generated: Mon Aug 12 05:19:11 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy