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Potassium in PDB 1pi4: Structure of N289A Mutant of Ampc in Complex with SM3, A Phenylglyclboronic Acid Bearing the Cephalothin R1 Side Chain

Enzymatic activity of Structure of N289A Mutant of Ampc in Complex with SM3, A Phenylglyclboronic Acid Bearing the Cephalothin R1 Side Chain

All present enzymatic activity of Structure of N289A Mutant of Ampc in Complex with SM3, A Phenylglyclboronic Acid Bearing the Cephalothin R1 Side Chain:
3.5.2.6;

Protein crystallography data

The structure of Structure of N289A Mutant of Ampc in Complex with SM3, A Phenylglyclboronic Acid Bearing the Cephalothin R1 Side Chain, PDB code: 1pi4 was solved by T.A.Roth, G.Minasov, P.J.Focia, B.K.Shoichet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.39
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 118.628, 76.104, 97.836, 90.00, 115.61, 90.00
R / Rfree (%) 15.9 / 17.3

Potassium Binding Sites:

The binding sites of Potassium atom in the Structure of N289A Mutant of Ampc in Complex with SM3, A Phenylglyclboronic Acid Bearing the Cephalothin R1 Side Chain (pdb code 1pi4). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Structure of N289A Mutant of Ampc in Complex with SM3, A Phenylglyclboronic Acid Bearing the Cephalothin R1 Side Chain, PDB code: 1pi4:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 1pi4

Go back to Potassium Binding Sites List in 1pi4
Potassium binding site 1 out of 2 in the Structure of N289A Mutant of Ampc in Complex with SM3, A Phenylglyclboronic Acid Bearing the Cephalothin R1 Side Chain


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of N289A Mutant of Ampc in Complex with SM3, A Phenylglyclboronic Acid Bearing the Cephalothin R1 Side Chain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K2

b:18.8
occ:0.50
O A:HOH711 2.3 28.3 0.5
O A:HOH522 2.6 25.3 1.0
O A:HOH863 2.7 35.9 1.0
OD1 A:ASP217 2.8 12.1 1.0
O A:GLY214 2.9 12.6 1.0
O A:HOH569 3.0 23.3 1.0
O A:HOH860 3.2 45.2 1.0
O A:HOH711 3.4 27.9 0.5
CG A:ASP217 3.6 10.8 1.0
O A:HOH859 3.9 43.3 1.0
N A:LEU216 3.9 11.7 1.0
C A:GLY214 3.9 12.6 1.0
OD2 A:ASP217 4.0 13.7 1.0
N A:ASP217 4.1 11.7 1.0
CA A:ALA215 4.1 12.9 1.0
C A:ALA215 4.4 10.6 1.0
O A:HOH483 4.4 22.3 1.0
N A:ALA215 4.5 12.6 1.0
CA A:LEU216 4.7 11.4 1.0
O A:HOH728 4.7 30.1 1.0
CB A:ASP217 4.7 10.7 1.0
N A:GLY214 4.9 12.4 1.0
C A:LEU216 4.9 11.4 1.0
CA A:ASP217 5.0 10.6 1.0
N A:ALA218 5.0 10.4 1.0

Potassium binding site 2 out of 2 in 1pi4

Go back to Potassium Binding Sites List in 1pi4
Potassium binding site 2 out of 2 in the Structure of N289A Mutant of Ampc in Complex with SM3, A Phenylglyclboronic Acid Bearing the Cephalothin R1 Side Chain


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of N289A Mutant of Ampc in Complex with SM3, A Phenylglyclboronic Acid Bearing the Cephalothin R1 Side Chain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K3

b:13.5
occ:0.50
O B:HOH486 2.6 20.7 1.0
O B:HOH778 2.7 42.9 1.0
O B:HOH488 2.8 18.5 1.0
O B:HOH536 2.9 23.1 1.0
OD1 B:ASP217 2.9 12.3 1.0
O B:GLY214 3.0 12.6 1.0
O B:HOH612 3.0 25.5 1.0
CG B:ASP217 3.7 10.7 1.0
N B:LEU216 3.8 11.8 1.0
C B:GLY214 4.0 11.2 1.0
CA B:ALA215 4.1 12.9 1.0
OD2 B:ASP217 4.1 12.9 1.0
N B:ASP217 4.1 10.0 1.0
O B:HOH635 4.2 30.6 1.0
C B:ALA215 4.3 11.4 1.0
N B:ALA215 4.5 12.0 1.0
O B:HOH528 4.6 30.1 1.0
O B:HOH650 4.6 28.8 1.0
CA B:LEU216 4.6 10.9 1.0
O B:HOH882 4.7 45.3 1.0
CB B:ASP217 4.8 9.8 1.0
O B:HOH532 4.9 23.4 1.0
C B:LEU216 4.9 10.7 1.0
O B:HOH751 5.0 24.5 1.0
N B:GLY214 5.0 12.3 1.0

Reference:

T.A.Roth, G.Minasov, S.Morandi, F.Prati, B.K.Shoichet. Thermodynamic Cycle Analysis and Inhibitor Design Against Beta-Lactamase. Biochemistry V. 42 14483 2003.
ISSN: ISSN 0006-2960
PubMed: 14661960
DOI: 10.1021/BI035054A
Page generated: Sun Dec 13 22:57:36 2020

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