Atomistry » Potassium » PDB 1o76-1pqo » 1p9e
Atomistry »
  Potassium »
    PDB 1o76-1pqo »
      1p9e »

Potassium in PDB 1p9e: Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3

Enzymatic activity of Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3

All present enzymatic activity of Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3:
3.1.8.1;

Protein crystallography data

The structure of Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3, PDB code: 1p9e was solved by Y.Dong, L.Sun, M.Bartlam, Z.Rao, X.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.40
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 85.020, 85.020, 199.773, 90.00, 90.00, 90.00
R / Rfree (%) 21.8 / 25.9

Other elements in 1p9e:

The structure of Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3 also contains other interesting chemical elements:

Zinc (Zn) 3 atoms
Cadmium (Cd) 1 atom
Sodium (Na) 5 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3 (pdb code 1p9e). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3, PDB code: 1p9e:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 1p9e

Go back to Potassium Binding Sites List in 1p9e
Potassium binding site 1 out of 4 in the Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K501

b:4.3
occ:1.00
O A:HOH693 2.6 18.9 1.0
OE1 A:GLU142 2.6 28.9 1.0
NA A:NA505 2.8 27.2 1.0
OE2 A:GLU142 2.9 31.6 1.0
CD A:GLU142 3.1 30.0 1.0
CG2 A:VAL223 4.2 28.9 1.0
NE A:ARG170 4.2 35.3 1.0
OH A:TYR144 4.4 24.7 1.0
CG A:GLU142 4.6 27.3 1.0
NZ A:LYS107 4.8 31.9 1.0
CG2 A:VAL168 4.8 26.8 1.0
N A:VAL223 4.9 27.8 1.0
NH2 A:ARG170 4.9 35.3 1.0
CD A:ARG170 5.0 32.6 1.0

Potassium binding site 2 out of 4 in 1p9e

Go back to Potassium Binding Sites List in 1p9e
Potassium binding site 2 out of 4 in the Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K502

b:18.3
occ:1.00
OD2 A:ASP172 2.8 31.1 1.0
O A:HOH695 2.8 26.3 1.0
OD1 A:ASP172 2.9 31.2 1.0
NE2 A:HIS232 2.9 30.4 1.0
CG A:ASP172 3.2 30.4 1.0
CD2 A:HIS232 3.7 29.9 1.0
CE1 A:HIS232 3.7 29.3 1.0
N A:GLY218 3.8 31.2 1.0
CB A:LYS174 3.9 30.3 1.0
CA A:GLY218 4.2 31.1 1.0
CG A:LYS174 4.2 34.0 1.0
N A:LYS174 4.4 26.9 1.0
O A:HOH659 4.5 22.1 1.0
CD A:LYS174 4.6 35.8 1.0
CB A:ASP172 4.6 27.4 1.0
ND1 A:HIS232 4.7 29.1 1.0
CG A:HIS232 4.7 29.7 1.0
CA A:GLY237 4.8 24.3 1.0
CA A:LYS174 4.8 28.8 1.0
C A:SER217 4.8 30.4 1.0
O A:PRO236 4.9 26.2 1.0

Potassium binding site 3 out of 4 in 1p9e

Go back to Potassium Binding Sites List in 1p9e
Potassium binding site 3 out of 4 in the Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K503

b:26.6
occ:1.00
O A:HOH696 2.8 34.5 1.0
OE1 A:GLU138 2.9 37.5 1.0
OE2 A:GLU138 3.0 36.3 1.0
NE2 A:GLN136 3.0 38.2 1.0
CD A:GLU138 3.3 36.1 1.0
CG A:GLN136 3.5 38.7 1.0
CD A:GLN136 3.7 39.8 1.0
CD A:PRO137 4.0 31.2 1.0
CE A:LYS131 4.7 37.4 1.0
CG A:GLU138 4.8 34.5 1.0
CB A:GLN136 4.8 34.9 1.0
CG A:PRO137 4.8 31.3 1.0
OE1 A:GLN136 4.8 40.2 1.0
N A:PRO137 5.0 31.5 1.0

Potassium binding site 4 out of 4 in 1p9e

Go back to Potassium Binding Sites List in 1p9e
Potassium binding site 4 out of 4 in the Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K504

b:20.7
occ:1.00
OD1 B:ASP54 2.8 38.1 1.0
CG B:ASP54 3.4 35.5 1.0
CB B:ASP54 3.6 32.4 1.0
OG B:SER245 4.2 31.0 1.0
OD2 B:ASP54 4.3 38.5 1.0
CG B:GLN246 4.3 31.0 1.0
NE2 B:GLN246 4.3 34.7 1.0
CE1 B:PHE55 4.7 23.1 1.0
CD B:GLN246 4.8 33.3 1.0
CA B:ASP54 4.9 28.0 1.0
N B:ASP54 4.9 26.6 1.0

Reference:

Y.Dong, L.Sun, M.Bartlam, Z.Rao, X.Zhang. Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3 To Be Published.
Page generated: Sun Dec 13 22:57:34 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy