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Potassium in PDB 1l8i: Dna Protection and Binding By E. Coli Dps Protein

Protein crystallography data

The structure of Dna Protection and Binding By E. Coli Dps Protein, PDB code: 1l8i was solved by J.Luo, D.Liu, M.A.White, R.O.Fox, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.86 / 3.00
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 90.536, 90.536, 226.079, 90.00, 90.00, 120.00
R / Rfree (%) 20.2 / 25

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Potassium atom in the Dna Protection and Binding By E. Coli Dps Protein (pdb code 1l8i). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 12 binding sites of Potassium where determined in the Dna Protection and Binding By E. Coli Dps Protein, PDB code: 1l8i:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 12 in 1l8i

Go back to Potassium Binding Sites List in 1l8i
Potassium binding site 1 out of 12 in the Dna Protection and Binding By E. Coli Dps Protein


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Dna Protection and Binding By E. Coli Dps Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K209

b:61.0
occ:1.00
 OE1 A:GLU82 3.4 44.0 1.0
OE2 A:GLU82 3.7 42.9 1.0
CD A:GLU82 3.8 43.2 1.0
OG1 A:THR79 4.3 34.2 1.0
NZ E:LYS157 4.7 40.4 1.0
N A:THR79 4.8 34.7 1.0
CB A:ALA78 4.8 35.9 1.0
CA A:THR79 4.8 35.5 1.0

Potassium binding site 2 out of 12 in 1l8i

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Potassium binding site 2 out of 12 in the Dna Protection and Binding By E. Coli Dps Protein


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Dna Protection and Binding By E. Coli Dps Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K206

b:62.4
occ:1.00
 OE1 B:GLU82 3.6 42.8 1.0
OE2 B:GLU82 3.7 39.5 1.0
CD B:GLU82 3.9 41.0 1.0
NZ H:LYS157 4.2 48.1 1.0
OG1 B:THR79 4.4 36.9 1.0
CA B:THR79 5.0 38.0 1.0

Potassium binding site 3 out of 12 in 1l8i

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Potassium binding site 3 out of 12 in the Dna Protection and Binding By E. Coli Dps Protein


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Dna Protection and Binding By E. Coli Dps Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K212

b:52.9
occ:1.00
 OE1 C:GLU82 3.7 64.5 1.0
OE2 C:GLU82 4.0 65.6 1.0
CD C:GLU82 4.1 64.2 1.0
OG1 C:THR79 4.2 52.3 1.0
CB C:ALA78 4.8 46.8 1.0
N C:THR79 4.8 49.5 1.0
CA C:THR79 4.9 50.8 1.0
O C:CYS75 4.9 46.3 1.0
NZ F:LYS157 4.9 61.6 1.0

Potassium binding site 4 out of 12 in 1l8i

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Potassium binding site 4 out of 12 in the Dna Protection and Binding By E. Coli Dps Protein


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Dna Protection and Binding By E. Coli Dps Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K203

b:76.2
occ:1.00
 OE1 D:GLU82 3.8 45.0 1.0
OE2 D:GLU82 3.9 45.8 1.0
CD D:GLU82 4.2 44.5 1.0
NZ G:LYS157 4.4 49.9 1.0
OG1 D:THR79 4.5 37.2 1.0

Potassium binding site 5 out of 12 in 1l8i

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Potassium binding site 5 out of 12 in the Dna Protection and Binding By E. Coli Dps Protein


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Dna Protection and Binding By E. Coli Dps Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K207

b:67.0
occ:1.00
 OE2 E:GLU82 3.1 56.4 1.0
OE1 E:GLN86 3.3 56.4 1.0
CD I:LYS157 3.7 47.4 1.0
CB E:GLU82 4.1 52.6 1.0
CG I:LYS157 4.1 48.7 1.0
CB I:LYS157 4.2 49.7 1.0
CD E:GLU82 4.2 56.2 1.0
CG2 E:THR79 4.4 37.6 1.0
CD E:GLN86 4.4 54.5 1.0
O E:THR79 4.4 40.6 1.0
CE I:LYS157 4.5 47.1 1.0
NZ I:LYS157 4.7 49.0 1.0
CG E:GLU82 4.8 54.4 1.0
NE2 E:GLN86 4.9 55.4 1.0
CA E:THR79 4.9 40.2 1.0
NH1 I:ARG153 4.9 48.6 1.0
O I:ARG153 4.9 48.8 1.0

Potassium binding site 6 out of 12 in 1l8i

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Potassium binding site 6 out of 12 in the Dna Protection and Binding By E. Coli Dps Protein


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Dna Protection and Binding By E. Coli Dps Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K208

b:55.8
occ:1.00
 OE1 E:GLU82 3.9 57.5 1.0
OE2 E:GLU82 4.0 56.4 1.0
OG1 E:THR79 4.0 38.3 1.0
CD E:GLU82 4.2 56.2 1.0
NZ I:LYS157 4.6 49.0 1.0
CA E:THR79 4.8 40.2 1.0
N E:THR79 4.9 38.9 1.0
CB E:THR79 4.9 38.7 1.0
O E:CYS75 4.9 48.4 1.0

Potassium binding site 7 out of 12 in 1l8i

Go back to Potassium Binding Sites List in 1l8i
Potassium binding site 7 out of 12 in the Dna Protection and Binding By E. Coli Dps Protein


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Dna Protection and Binding By E. Coli Dps Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K211

b:49.2
occ:1.00
 OE1 F:GLU82 3.6 56.0 1.0
OE2 F:GLU82 3.9 53.8 1.0
CD F:GLU82 4.0 53.4 1.0
NZ L:LYS157 4.3 55.7 1.0
OG1 F:THR79 4.4 41.9 1.0

Potassium binding site 8 out of 12 in 1l8i

Go back to Potassium Binding Sites List in 1l8i
Potassium binding site 8 out of 12 in the Dna Protection and Binding By E. Coli Dps Protein


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Dna Protection and Binding By E. Coli Dps Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K201

b:79.6
occ:1.00
 OE1 G:GLU82 3.3 43.6 1.0
OE2 G:GLU82 3.5 47.1 1.0
CD G:GLU82 3.7 44.9 1.0
OG1 G:THR79 4.3 38.7 1.0
NZ J:LYS157 4.4 44.3 1.0
O G:HOH314 4.4 36.2 1.0
CA G:THR79 4.8 39.7 1.0
N G:THR79 4.9 37.3 1.0
CG G:GLU82 5.0 43.6 1.0

Potassium binding site 9 out of 12 in 1l8i

Go back to Potassium Binding Sites List in 1l8i
Potassium binding site 9 out of 12 in the Dna Protection and Binding By E. Coli Dps Protein


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Dna Protection and Binding By E. Coli Dps Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K205

b:53.0
occ:1.00
 OE1 H:GLU82 3.8 49.1 1.0
OE2 H:GLU82 4.0 50.2 1.0
CD H:GLU82 4.2 48.9 1.0
OG1 H:THR79 4.4 43.5 1.0
NZ K:LYS157 4.8 45.5 1.0
O H:CYS75 5.0 42.4 1.0
CB H:ALA78 5.0 38.8 1.0
N H:THR79 5.0 39.6 1.0

Potassium binding site 10 out of 12 in 1l8i

Go back to Potassium Binding Sites List in 1l8i
Potassium binding site 10 out of 12 in the Dna Protection and Binding By E. Coli Dps Protein


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Dna Protection and Binding By E. Coli Dps Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
I:K204

b:67.8
occ:1.00
 OE1 I:GLU82 3.9 50.4 1.0
OE2 I:GLU82 3.9 48.4 1.0
OG1 I:THR79 4.0 44.5 1.0
CD I:GLU82 4.2 49.5 1.0
NZ A:LYS157 4.7 40.9 1.0
CA I:THR79 4.8 44.0 1.0
N I:THR79 4.8 43.4 1.0
CB I:THR79 4.9 44.6 1.0
O I:CYS75 4.9 40.2 1.0

Reference:

J.Luo, D.Liu, M.A.White, R.O.Fox. Dna Protection and Binding By E. Coli Dps Protein To Be Published.
Page generated: Mon Aug 12 04:48:43 2024

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