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Potassium in PDB 1kp8: Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution

Protein crystallography data

The structure of Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution, PDB code: 1kp8 was solved by J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.89 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 135.571, 260.112, 150.200, 90.00, 101.14, 90.00
R / Rfree (%) 24.3 / 25.8

Other elements in 1kp8:

The structure of Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 14 atoms

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Potassium atom in the Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution (pdb code 1kp8). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 16 binding sites of Potassium where determined in the Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution, PDB code: 1kp8:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 16 in 1kp8

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Potassium binding site 1 out of 16 in the Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K549

b:40.8
occ:1.00
 O A:LYS51 2.5 43.2 1.0
O A:HOH5462 2.5 37.3 1.0
O A:HOH5460 2.6 32.5 1.0
O A:THR30 2.6 33.6 1.0
O1A A:AGS1 2.6 37.3 1.0
O A:HOH5463 2.8 50.1 1.0
O A:HOH5461 2.8 61.9 1.0
O A:HOH5013 3.7 82.5 1.0
C A:THR30 3.7 32.9 1.0
PA A:AGS1 3.8 36.6 1.0
C A:LYS51 3.8 42.3 1.0
O2A A:AGS1 4.1 36.8 1.0
OG1 A:THR30 4.1 30.6 1.0
CB A:THR30 4.2 31.7 1.0
O3A A:AGS1 4.4 36.9 1.0
CB A:LYS51 4.5 42.3 1.0
N A:GLY32 4.6 30.2 1.0
S1G A:AGS1 4.6 41.0 1.0
CA A:THR30 4.6 30.9 1.0
CA A:LEU31 4.6 30.1 1.0
N A:LEU31 4.6 30.4 1.0
N A:ASP52 4.7 44.1 1.0
CA A:LYS51 4.7 41.5 1.0
O3G A:AGS1 4.7 42.2 1.0
CA A:ASP52 4.7 45.5 1.0
O A:GLY32 4.7 34.3 1.0
N A:GLY53 4.9 42.9 1.0
C A:LEU31 5.0 30.1 1.0
O5' A:AGS1 5.0 35.1 1.0

Potassium binding site 2 out of 16 in 1kp8

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Potassium binding site 2 out of 16 in the Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K549

b:38.0
occ:1.00
 O B:HOH5466 2.4 43.8 1.0
O B:HOH5464 2.4 38.9 1.0
O B:LYS51 2.5 38.1 1.0
O1A B:AGS1 2.6 36.0 1.0
O B:HOH5467 2.6 39.5 1.0
O B:THR30 2.6 33.5 1.0
O B:HOH5465 2.7 56.2 1.0
C B:LYS51 3.6 37.9 1.0
PA B:AGS1 3.7 38.7 1.0
C B:THR30 3.7 32.5 1.0
O2A B:AGS1 4.1 39.3 1.0
CB B:THR30 4.1 30.4 1.0
OG1 B:THR30 4.2 30.6 1.0
CB B:LYS51 4.4 36.7 1.0
O3A B:AGS1 4.4 39.0 1.0
CA B:ASP52 4.5 40.9 1.0
N B:ASP52 4.5 39.0 1.0
CA B:THR30 4.5 30.2 1.0
CA B:LYS51 4.6 38.2 1.0
CA B:LEU31 4.6 29.0 1.0
N B:GLY32 4.6 30.2 1.0
N B:LEU31 4.6 29.7 1.0
O B:HOH5044 4.7 57.2 1.0
N B:GLY53 4.7 39.3 1.0
O B:HOH2508 4.8 64.3 1.0
O3G B:AGS1 4.8 48.2 1.0
S1G B:AGS1 4.9 45.6 1.0
O5' B:AGS1 4.9 40.6 1.0
C B:LEU31 4.9 29.8 1.0
O B:HOH1915 5.0 58.3 1.0

Potassium binding site 3 out of 16 in 1kp8

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Potassium binding site 3 out of 16 in the Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K549

b:45.8
occ:1.00
 O1A C:AGS1 2.5 37.5 1.0
O C:LYS51 2.5 34.3 1.0
O C:HOH5468 2.6 35.8 1.0
O C:HOH5471 2.6 39.1 1.0
O C:THR30 2.6 35.0 1.0
O C:HOH5469 2.7 40.0 1.0
O C:HOH5470 2.8 51.9 1.0
PA C:AGS1 3.7 40.4 1.0
C C:THR30 3.7 36.2 1.0
C C:LYS51 3.7 37.2 1.0
O2A C:AGS1 4.0 41.7 1.0
O C:HOH5075 4.1 56.7 1.0
OG1 C:THR30 4.2 36.2 1.0
CB C:THR30 4.2 33.7 1.0
O3A C:AGS1 4.4 42.1 1.0
CB C:LYS51 4.4 35.2 1.0
O C:HOH1141 4.5 68.8 1.0
CA C:THR30 4.6 34.1 1.0
N C:GLY32 4.6 35.8 1.0
N C:LEU31 4.6 36.3 1.0
CA C:LEU31 4.6 34.9 1.0
N C:ASP52 4.6 38.9 1.0
CA C:ASP52 4.6 42.3 1.0
S1G C:AGS1 4.6 47.7 1.0
CA C:LYS51 4.7 38.0 1.0
O3G C:AGS1 4.7 49.1 1.0
O C:GLY32 4.8 38.4 1.0
O5' C:AGS1 4.9 41.7 1.0
N C:GLY53 4.9 41.0 1.0
C C:LEU31 4.9 35.6 1.0

Potassium binding site 4 out of 16 in 1kp8

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Potassium binding site 4 out of 16 in the Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K1

b:30.6
occ:1.00
 O D:SER135 2.6 38.5 1.0
O D:ALA133 2.8 28.0 1.0
O D:LYS132 2.9 37.8 1.0
C D:ALA133 3.4 31.4 1.0
C D:SER135 3.6 36.1 1.0
N D:SER135 3.8 35.5 1.0
CA D:ALA133 3.9 31.2 1.0
C D:LYS132 4.0 37.3 1.0
CA D:SER135 4.1 34.9 1.0
C D:LEU134 4.1 34.3 1.0
N D:LEU134 4.2 31.6 1.0
CB D:SER135 4.4 33.6 1.0
N D:ALA133 4.4 33.8 1.0
O D:LEU134 4.6 34.7 1.0
CA D:LEU134 4.6 35.1 1.0
N D:VAL136 4.8 33.4 1.0

Potassium binding site 5 out of 16 in 1kp8

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Potassium binding site 5 out of 16 in the Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K549

b:34.6
occ:1.00
 O D:HOH5472 2.5 28.8 1.0
O D:THR30 2.5 29.1 1.0
O D:LYS51 2.5 35.0 1.0
O D:HOH5474 2.5 34.2 1.0
O1A D:AGS551 2.5 33.3 1.0
O D:HOH5475 2.6 34.0 1.0
O D:HOH5473 2.8 53.5 1.0
C D:THR30 3.6 29.1 1.0
PA D:AGS551 3.7 31.6 1.0
C D:LYS51 3.7 35.2 1.0
O2A D:AGS551 4.1 32.2 1.0
OG1 D:THR30 4.1 29.1 1.0
CB D:THR30 4.2 28.3 1.0
O3A D:AGS551 4.4 31.2 1.0
CB D:LYS51 4.4 34.1 1.0
N D:LEU31 4.5 27.1 1.0
CA D:LEU31 4.5 27.1 1.0
N D:GLY32 4.5 26.6 1.0
CA D:THR30 4.5 27.4 1.0
S1G D:AGS551 4.5 40.5 1.0
O D:HOH5106 4.6 78.1 1.0
N D:ASP52 4.6 36.5 1.0
CA D:ASP52 4.6 39.1 1.0
CA D:LYS51 4.6 35.9 1.0
O3G D:AGS551 4.7 39.7 1.0
O D:GLY32 4.7 30.8 1.0
O D:HOH2612 4.7 66.7 1.0
C D:LEU31 4.8 26.7 1.0
O5' D:AGS551 4.9 33.1 1.0
N D:GLY53 4.9 38.2 1.0

Potassium binding site 6 out of 16 in 1kp8

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Potassium binding site 6 out of 16 in the Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K549

b:31.7
occ:1.00
 O E:SER135 2.6 33.2 1.0
O E:LYS132 2.8 33.1 1.0
O E:ALA133 2.8 34.8 1.0
O E:HOH1900 2.9 47.0 1.0
C E:ALA133 3.4 36.7 1.0
C E:SER135 3.5 33.3 1.0
N E:SER135 3.6 34.7 1.0
CA E:ALA133 3.7 35.8 1.0
C E:LYS132 3.8 34.7 1.0
CA E:SER135 3.9 34.9 1.0
CB E:SER135 3.9 31.5 1.0
C E:LEU134 4.3 38.2 1.0
N E:LEU134 4.3 37.1 1.0
N E:ALA133 4.3 34.7 1.0
O E:HOH1036 4.5 37.3 1.0
N E:VAL136 4.7 33.3 1.0
CA E:LEU134 4.8 39.4 1.0
O E:LEU134 4.9 38.6 1.0

Potassium binding site 7 out of 16 in 1kp8

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Potassium binding site 7 out of 16 in the Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K4007

b:36.3
occ:1.00
 O E:HOH5478 2.5 33.3 1.0
O E:HOH5476 2.5 36.7 1.0
O E:LYS51 2.5 35.9 1.0
O1A E:AGS1 2.5 32.0 1.0
O E:HOH5479 2.5 31.7 1.0
O E:THR30 2.6 28.0 1.0
O E:HOH5477 2.7 44.9 1.0
PA E:AGS1 3.7 31.4 1.0
C E:THR30 3.7 27.6 1.0
C E:LYS51 3.7 35.5 1.0
O E:HOH5137 3.8 78.7 1.0
O2A E:AGS1 4.0 29.8 1.0
CB E:THR30 4.1 26.1 1.0
OG1 E:THR30 4.1 25.6 1.0
CB E:LYS51 4.3 32.0 1.0
O3A E:AGS1 4.3 32.9 1.0
N E:GLY32 4.5 25.5 1.0
CA E:THR30 4.5 26.0 1.0
N E:LEU31 4.6 27.1 1.0
CA E:LEU31 4.6 27.1 1.0
CA E:LYS51 4.6 35.6 1.0
S1G E:AGS1 4.6 35.3 1.0
N E:ASP52 4.6 37.3 1.0
O3G E:AGS1 4.7 32.5 1.0
CA E:ASP52 4.7 38.8 1.0
O E:GLY32 4.7 29.2 1.0
O E:HOH2965 4.7 67.4 1.0
O E:HOH2633 4.7 75.0 1.0
C E:LEU31 4.9 25.7 1.0
O5' E:AGS1 4.9 31.4 1.0
N E:GLY53 4.9 37.2 1.0

Potassium binding site 8 out of 16 in 1kp8

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Potassium binding site 8 out of 16 in the Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K549

b:41.0
occ:1.00
 O F:LYS51 2.5 35.7 1.0
O F:HOH5480 2.5 36.8 1.0
O F:HOH5482 2.6 42.1 1.0
O F:THR30 2.6 30.0 1.0
O F:HOH5483 2.6 35.6 1.0
O1A F:AGS1 2.6 40.5 1.0
O F:HOH5481 2.8 61.1 1.0
C F:LYS51 3.7 36.6 1.0
C F:THR30 3.7 30.4 1.0
PA F:AGS1 3.8 34.9 1.0
O2A F:AGS1 4.0 37.5 1.0
CB F:THR30 4.1 30.0 1.0
OG1 F:THR30 4.1 30.1 1.0
CB F:LYS51 4.4 37.8 1.0
O3A F:AGS1 4.4 38.9 1.0
CA F:THR30 4.5 29.9 1.0
N F:ASP52 4.6 38.7 1.0
CA F:ASP52 4.6 40.4 1.0
N F:LEU31 4.6 28.0 1.0
S1G F:AGS1 4.6 44.7 1.0
CA F:LYS51 4.6 37.4 1.0
CA F:LEU31 4.6 29.7 1.0
N F:GLY32 4.6 34.4 1.0
O F:HOH2568 4.7 73.0 1.0
O3G F:AGS1 4.8 45.6 1.0
O F:GLY32 4.8 37.6 1.0
N F:GLY53 4.8 37.1 1.0
C F:LEU31 5.0 31.0 1.0
O5' F:AGS1 5.0 37.8 1.0

Potassium binding site 9 out of 16 in 1kp8

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Potassium binding site 9 out of 16 in the Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K549

b:39.5
occ:1.00
 O1A G:AGS1 2.5 38.7 1.0
O G:HOH5484 2.5 29.7 1.0
O G:LYS51 2.5 38.6 1.0
O G:HOH5487 2.6 36.3 1.0
O G:THR30 2.7 31.9 1.0
O G:HOH5486 2.7 37.3 1.0
O G:HOH5485 2.8 46.3 1.0
PA G:AGS1 3.6 34.9 1.0
C G:LYS51 3.7 40.0 1.0
C G:THR30 3.7 31.5 1.0
O2A G:AGS1 3.9 36.5 1.0
CB G:THR30 4.3 31.2 1.0
O3A G:AGS1 4.3 36.0 1.0
OG1 G:THR30 4.3 31.5 1.0
O G:HOH1862 4.4 58.7 1.0
O G:HOH5199 4.4 59.7 1.0
CB G:LYS51 4.4 39.3 1.0
N G:GLY32 4.5 29.7 1.0
O3G G:AGS1 4.6 41.3 1.0
CA G:LEU31 4.6 28.4 1.0
N G:LEU31 4.6 29.0 1.0
N G:ASP52 4.6 42.1 1.0
CA G:ASP52 4.6 44.8 1.0
CA G:THR30 4.6 30.0 1.0
S1G G:AGS1 4.6 40.7 1.0
CA G:LYS51 4.7 40.7 1.0
O G:GLY32 4.8 34.3 1.0
O5' G:AGS1 4.8 34.1 1.0
C G:LEU31 4.9 29.5 1.0
N G:GLY53 4.9 41.5 1.0
O G:HOH2664 5.0 65.0 1.0

Potassium binding site 10 out of 16 in 1kp8

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Potassium binding site 10 out of 16 in the Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K549

b:41.9
occ:1.00
 O H:HOH5488 2.5 35.2 1.0
O H:HOH5491 2.5 38.4 1.0
O H:LYS51 2.5 37.6 1.0
O1A H:AGS1 2.5 35.5 1.0
O H:THR30 2.6 29.7 1.0
O H:HOH5490 2.8 47.0 1.0
O H:HOH5489 2.8 56.4 1.0
C H:THR30 3.7 29.9 1.0
PA H:AGS1 3.7 35.3 1.0
C H:LYS51 3.7 39.4 1.0
O H:HOH2994 4.0 80.7 1.0
CB H:THR30 4.1 30.0 1.0
O2A H:AGS1 4.1 35.4 1.0
OG1 H:THR30 4.2 30.6 1.0
O3A H:AGS1 4.4 35.6 1.0
CB H:LYS51 4.4 38.3 1.0
CA H:THR30 4.5 29.8 1.0
N H:LEU31 4.5 28.4 1.0
CA H:LEU31 4.5 27.1 1.0
N H:GLY32 4.6 27.9 1.0
N H:ASP52 4.6 40.1 1.0
S1G H:AGS1 4.6 40.4 1.0
CA H:LYS51 4.6 39.3 1.0
CA H:ASP52 4.6 42.2 1.0
O H:GLY32 4.7 32.7 1.0
O3G H:AGS1 4.7 37.5 1.0
C H:LEU31 4.8 27.8 1.0
N H:GLY53 4.9 40.5 1.0
O5' H:AGS1 4.9 37.4 1.0
O H:HOH5230 4.9 56.7 1.0

Reference:

J.Wang, D.C.Boisvert. Structural Basis For Groel-Assisted Protein Folding From the Crystal Structure of (Groel-Kmgatp)14 at 2.0 A Resolution J.Mol.Biol. V. 327 843 2003.
ISSN: ISSN 0022-2836
PubMed: 12654267
DOI: 10.1016/S0022-2836(03)00184-0
Page generated: Mon Aug 12 04:47:28 2024

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