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Potassium in PDB 1jg5: Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp

Protein crystallography data

The structure of Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp, PDB code: 1jg5 was solved by G.Bader, S.Schiffmann, A.Herrmann, M.Fischer, M.Gutlich, G.Auerbach, T.Ploom, A.Bacher, R.Huber, T.Lemm, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.60
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 106.803, 110.052, 38.686, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 21.4

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp (pdb code 1jg5). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp, PDB code: 1jg5:
Jump to Potassium binding site number: 1; 2; 3; 4; 5;

Potassium binding site 1 out of 5 in 1jg5

Go back to Potassium Binding Sites List in 1jg5
Potassium binding site 1 out of 5 in the Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1504

b:34.6
occ:1.00
 O A:GLN8 2.8 19.0 1.0
O A:ARG10 2.9 22.8 1.0
O A:VAL13 2.9 22.6 1.0
OG1 A:THR7 3.2 16.3 1.0
O A:GLY14 3.4 20.9 1.0
O A:HOH544 3.5 43.3 1.0
O A:HOH662 3.5 51.1 1.0
CG2 A:VAL13 3.7 20.9 1.0
C A:VAL13 3.7 21.6 1.0
C A:GLY14 3.9 20.4 1.0
C A:GLN8 3.9 19.7 1.0
N A:GLN8 3.9 18.2 1.0
C A:ARG10 4.0 22.3 1.0
CA A:GLY14 4.3 20.8 1.0
O A:PRO15 4.3 20.6 1.0
N A:GLY14 4.3 21.3 1.0
CA A:GLN8 4.4 19.3 1.0
CB A:THR7 4.4 15.5 1.0
N A:ARG10 4.4 21.5 1.0
N A:PRO15 4.6 20.2 1.0
C A:ILE9 4.6 21.4 1.0
CB A:GLN8 4.6 20.3 1.0
CA A:VAL13 4.6 21.2 1.0
N A:VAL13 4.6 21.0 1.0
CG2 A:THR7 4.7 14.5 1.0
CB A:VAL13 4.7 21.3 1.0
O A:ILE9 4.7 21.6 1.0
C A:THR7 4.7 16.8 1.0
CA A:ARG10 4.9 21.6 1.0
CA A:THR7 4.9 15.9 1.0
N A:MET11 4.9 22.2 1.0
CA A:MET11 4.9 21.7 1.0
N A:ILE9 5.0 20.4 1.0
CD A:PRO15 5.0 19.9 1.0

Potassium binding site 2 out of 5 in 1jg5

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Potassium binding site 2 out of 5 in the Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K1503

b:35.9
occ:1.00
 O B:GLN8 2.8 23.7 1.0
O B:VAL13 2.9 20.6 1.0
O B:ARG10 2.9 25.7 1.0
OG1 B:THR7 3.2 19.6 1.0
O B:GLY14 3.4 20.8 1.0
O B:HOH507 3.6 43.1 1.0
C B:GLY14 3.8 20.5 1.0
C B:VAL13 3.8 21.2 1.0
C B:GLN8 3.9 23.7 1.0
N B:GLN8 4.0 22.0 1.0
C B:ARG10 4.1 25.2 1.0
CG2 B:VAL13 4.1 20.3 1.0
O B:PRO15 4.2 20.8 1.0
CA B:GLY14 4.2 20.2 1.0
N B:GLY14 4.4 20.5 1.0
CB B:THR7 4.4 19.7 1.0
N B:PRO15 4.4 20.8 1.0
CA B:GLN8 4.4 23.4 1.0
N B:ARG10 4.6 25.6 1.0
CG2 B:THR7 4.6 19.4 1.0
C B:ILE9 4.6 25.6 1.0
CB B:GLN8 4.7 24.1 1.0
C B:THR7 4.8 20.9 1.0
CA B:VAL13 4.8 21.5 1.0
CD B:PRO15 4.8 20.7 1.0
N B:VAL13 4.9 21.9 1.0
O B:ILE9 4.9 25.6 1.0
CA B:ARG10 4.9 25.2 1.0
CA B:THR7 4.9 19.9 1.0
N B:ILE9 4.9 24.3 1.0
N B:MET11 5.0 25.1 1.0
CA B:MET11 5.0 24.6 1.0

Potassium binding site 3 out of 5 in 1jg5

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Potassium binding site 3 out of 5 in the Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1501

b:35.5
occ:1.00
 O C:GLN8 2.8 26.9 1.0
O C:ARG10 2.9 28.9 1.0
O C:VAL13 2.9 27.2 1.0
OG1 C:THR7 3.0 23.1 1.0
O C:GLY14 3.4 27.4 1.0
O C:HOH599 3.6 43.3 1.0
O C:HOH527 3.6 50.8 1.0
C C:VAL13 3.8 27.0 1.0
C C:GLY14 3.8 27.4 1.0
C C:GLN8 3.8 26.8 1.0
N C:GLN8 3.9 25.0 1.0
C C:ARG10 4.1 28.1 1.0
CG2 C:VAL13 4.1 26.1 1.0
O C:PRO15 4.1 28.2 1.0
CB C:THR7 4.2 22.5 1.0
CA C:GLY14 4.4 27.2 1.0
CG2 C:THR7 4.4 22.4 1.0
N C:PRO15 4.4 27.5 1.0
CA C:GLN8 4.4 26.2 1.0
N C:GLY14 4.5 27.3 1.0
N C:ARG10 4.6 28.3 1.0
C C:ILE9 4.6 28.8 1.0
C C:THR7 4.7 23.6 1.0
CB C:GLN8 4.7 26.9 1.0
CA C:VAL13 4.7 26.9 1.0
N C:VAL13 4.8 26.8 1.0
O C:ILE9 4.8 29.0 1.0
CA C:THR7 4.8 22.8 1.0
CD C:PRO15 4.8 27.4 1.0
N C:ILE9 4.8 28.0 1.0
CA C:ARG10 4.9 27.6 1.0
CA C:ILE9 5.0 28.8 1.0
CA C:MET11 5.0 27.2 1.0

Potassium binding site 4 out of 5 in 1jg5

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Potassium binding site 4 out of 5 in the Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K1502

b:31.7
occ:1.00
 O D:VAL13 2.9 27.5 1.0
O D:GLN8 2.9 28.0 1.0
O D:ARG10 2.9 28.4 1.0
OG1 D:THR7 3.0 23.9 1.0
O D:GLY14 3.5 24.0 1.0
O D:HOH519 3.5 36.3 1.0
C D:VAL13 3.6 26.9 1.0
CG2 D:VAL13 3.8 26.0 1.0
C D:GLY14 3.8 23.9 1.0
N D:GLN8 3.9 26.3 1.0
C D:GLN8 4.0 28.0 1.0
C D:ARG10 4.0 29.0 1.0
CA D:GLY14 4.1 24.7 1.0
CB D:THR7 4.2 23.0 1.0
N D:GLY14 4.2 26.1 1.0
O D:PRO15 4.3 22.0 1.0
CG2 D:THR7 4.3 22.4 1.0
CA D:GLN8 4.5 27.6 1.0
N D:PRO15 4.6 23.6 1.0
CA D:VAL13 4.6 27.0 1.0
N D:ARG10 4.7 29.5 1.0
C D:THR7 4.7 24.9 1.0
N D:VAL13 4.7 27.2 1.0
CB D:GLN8 4.7 28.5 1.0
CB D:VAL13 4.8 27.0 1.0
C D:ILE9 4.8 29.3 1.0
CA D:THR7 4.8 23.5 1.0
CA D:MET11 4.8 28.5 1.0
N D:MET11 4.9 28.8 1.0
CA D:ARG10 4.9 29.4 1.0

Potassium binding site 5 out of 5 in 1jg5

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Potassium binding site 5 out of 5 in the Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K1500

b:32.2
occ:1.00
 O E:GLN8 2.8 25.3 1.0
O E:VAL13 2.8 23.9 1.0
O E:ARG10 3.0 25.2 1.0
OG1 E:THR7 3.1 25.5 1.0
O E:GLY14 3.3 22.2 1.0
O E:HOH532 3.5 40.9 1.0
O E:HOH633 3.5 57.7 1.0
C E:VAL13 3.7 23.4 1.0
C E:GLY14 3.7 21.9 1.0
N E:GLN8 3.8 25.1 1.0
C E:GLN8 3.8 25.6 1.0
CG2 E:VAL13 4.0 23.6 1.0
C E:ARG10 4.1 24.9 1.0
CA E:GLY14 4.2 22.3 1.0
O E:PRO15 4.2 21.7 1.0
CB E:THR7 4.3 24.5 1.0
N E:GLY14 4.3 23.1 1.0
N E:PRO15 4.3 21.7 1.0
CA E:GLN8 4.3 25.5 1.0
CG2 E:THR7 4.4 24.1 1.0
N E:ARG10 4.5 26.0 1.0
CB E:GLN8 4.5 25.9 1.0
C E:ILE9 4.6 26.2 1.0
CA E:VAL13 4.6 23.2 1.0
N E:VAL13 4.7 22.9 1.0
C E:THR7 4.7 24.5 1.0
O E:ILE9 4.8 26.5 1.0
CA E:THR7 4.8 24.0 1.0
CB E:VAL13 4.9 23.5 1.0
CD E:PRO15 4.9 20.9 1.0
CA E:ARG10 4.9 25.2 1.0
N E:ILE9 4.9 25.9 1.0
O E:HOH648 4.9 44.6 1.0
N E:MET11 5.0 24.5 1.0
CA E:MET11 5.0 24.1 1.0

Reference:

G.Bader, S.Schiffmann, A.Herrmann, M.Fischer, M.Gutlich, G.Auerbach, T.Ploom, A.Bacher, R.Huber, T.Lemm. Crystal Structure of Rat Gtp Cyclohydrolase I Feedback Regulatory Protein, Gfrp. J.Mol.Biol. V. 312 1051 2001.
ISSN: ISSN 0022-2836
PubMed: 11580249
DOI: 10.1006/JMBI.2001.5011
Page generated: Mon Aug 12 04:38:47 2024

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