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Potassium in PDB 1is7: Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex

Enzymatic activity of Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex

All present enzymatic activity of Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex:
3.5.4.16;

Protein crystallography data

The structure of Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex, PDB code: 1is7 was solved by N.Maita, K.Okada, K.Hatakeyama, T.Hakoshima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 124.151, 111.723, 126.108, 90.00, 97.37, 90.00
R / Rfree (%) 22.8 / 26.4

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex (pdb code 1is7). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 10 binding sites of Potassium where determined in the Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex, PDB code: 1is7:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 10 in 1is7

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Potassium binding site 1 out of 10 in the Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex


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Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
K:K2006

b:48.0
occ:1.00
 O K:VAL14 2.5 44.7 1.0
OG1 K:THR8 2.6 35.5 1.0
O K:HOH2008 2.8 34.7 1.0
O K:ARG11 2.9 38.8 1.0
O K:GLN9 3.1 34.9 1.0
O K:GLY15 3.2 33.9 1.0
C K:VAL14 3.4 40.8 1.0
C K:GLY15 3.4 34.2 1.0
N K:GLN9 3.7 33.3 1.0
CA K:GLY15 3.8 35.6 1.0
O K:PRO16 3.8 37.6 1.0
CG1 K:VAL14 4.0 41.5 1.0
N K:GLY15 4.0 39.1 1.0
CB K:THR8 4.0 33.5 1.0
C K:GLN9 4.1 33.9 1.0
C K:ARG11 4.1 39.4 1.0
N K:PRO16 4.2 32.2 1.0
CA K:GLN9 4.4 33.9 1.0
N K:ARG11 4.4 37.5 1.0
CA K:VAL14 4.5 41.5 1.0
C K:THR8 4.6 33.8 1.0
CG2 K:THR8 4.7 31.5 1.0
CA K:THR8 4.7 33.9 1.0
CD K:PRO16 4.7 28.4 1.0
CA K:ARG11 4.8 38.2 1.0
N K:VAL14 4.8 43.4 1.0
C K:PRO16 4.8 35.0 1.0
CB K:VAL14 4.8 40.8 1.0

Potassium binding site 2 out of 10 in 1is7

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Potassium binding site 2 out of 10 in the Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex


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Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
L:K2007

b:48.9
occ:1.00
 O L:VAL14 2.5 43.9 1.0
O L:ARG11 2.8 39.5 1.0
O L:HOH2014 2.8 27.5 1.0
OG1 L:THR8 2.9 38.7 1.0
O L:GLN9 2.9 37.3 1.0
O L:GLY15 3.3 37.8 1.0
C L:VAL14 3.4 42.2 1.0
C L:GLY15 3.6 36.6 1.0
CG1 L:VAL14 3.8 44.2 1.0
N L:GLN9 3.8 34.2 1.0
CA L:GLY15 3.9 37.2 1.0
C L:ARG11 4.0 38.6 1.0
C L:GLN9 4.0 34.8 1.0
O L:PRO16 4.0 43.5 1.0
N L:GLY15 4.1 39.9 1.0
CB L:THR8 4.2 35.9 1.0
N L:ARG11 4.2 35.7 1.0
N L:PRO16 4.3 34.1 1.0
CA L:GLN9 4.4 34.5 1.0
CA L:VAL14 4.5 42.5 1.0
CA L:ARG11 4.5 37.5 1.0
CB L:VAL14 4.7 42.3 1.0
CG2 L:THR8 4.7 32.5 1.0
N L:VAL14 4.7 42.7 1.0
C L:THR8 4.7 35.8 1.0
CB L:ARG11 4.8 36.8 1.0
CD L:PRO16 4.8 30.6 1.0
CA L:THR8 4.8 36.3 1.0

Potassium binding site 3 out of 10 in 1is7

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Potassium binding site 3 out of 10 in the Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
M:K2008

b:43.4
occ:1.00
 O M:VAL14 2.6 43.1 1.0
OG1 M:THR8 2.6 37.1 1.0
O M:GLN9 2.9 32.2 1.0
O M:ARG11 3.0 38.7 1.0
O M:GLY15 3.3 32.3 1.0
C M:GLY15 3.5 32.7 1.0
C M:VAL14 3.6 40.7 1.0
N M:GLN9 3.6 32.3 1.0
O M:PRO16 3.8 39.3 1.0
CA M:GLY15 3.9 34.5 1.0
C M:GLN9 3.9 32.1 1.0
CB M:THR8 4.0 33.0 1.0
CG1 M:VAL14 4.1 41.1 1.0
C M:ARG11 4.1 36.8 1.0
N M:GLY15 4.2 38.5 1.0
N M:PRO16 4.2 32.5 1.0
CA M:GLN9 4.3 31.9 1.0
N M:ARG11 4.4 33.2 1.0
C M:THR8 4.5 32.8 1.0
CG2 M:THR8 4.5 30.8 1.0
CA M:THR8 4.5 32.0 1.0
CA M:VAL14 4.7 40.8 1.0
CD M:PRO16 4.7 29.9 1.0
CA M:ARG11 4.8 34.7 1.0
C M:PRO16 4.8 35.7 1.0
N M:VAL14 4.9 41.5 1.0
CB M:VAL14 4.9 40.9 1.0

Potassium binding site 4 out of 10 in 1is7

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Potassium binding site 4 out of 10 in the Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
N:K2009

b:42.8
occ:1.00
 O N:VAL14 2.6 38.6 1.0
O N:ARG11 2.7 36.4 1.0
O N:GLN9 2.7 35.7 1.0
OG1 N:THR8 2.8 35.5 1.0
O N:HOH2013 2.9 28.3 1.0
O N:GLY15 3.5 29.3 1.0
C N:VAL14 3.6 36.6 1.0
N N:GLN9 3.7 33.0 1.0
C N:GLY15 3.8 29.0 1.0
C N:GLN9 3.8 34.1 1.0
C N:ARG11 3.8 35.6 1.0
CG1 N:VAL14 4.0 38.7 1.0
N N:ARG11 4.1 33.7 1.0
CA N:GLY15 4.1 30.5 1.0
CB N:THR8 4.1 33.8 1.0
O N:PRO16 4.2 38.2 1.0
CA N:GLN9 4.3 33.2 1.0
N N:GLY15 4.3 33.9 1.0
CA N:ARG11 4.4 34.3 1.0
N N:PRO16 4.5 28.2 1.0
CG2 N:THR8 4.6 33.0 1.0
C N:THR8 4.6 34.2 1.0
CA N:VAL14 4.6 38.1 1.0
CB N:ARG11 4.7 33.2 1.0
CA N:THR8 4.8 34.0 1.0
N N:VAL14 4.8 39.3 1.0
CB N:VAL14 4.9 37.9 1.0
N N:MET12 4.9 39.0 1.0
N N:ILE10 5.0 33.8 1.0
CD N:PRO16 5.0 27.7 1.0

Potassium binding site 5 out of 10 in 1is7

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Potassium binding site 5 out of 10 in the Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
O:K2010

b:52.2
occ:1.00
 O O:VAL14 2.5 37.4 1.0
O O:ARG11 2.7 37.3 1.0
OG1 O:THR8 2.7 33.4 1.0
O O:GLN9 2.8 32.5 1.0
O O:GLY15 3.4 31.6 1.0
C O:VAL14 3.5 37.5 1.0
N O:GLN9 3.8 30.9 1.0
C O:GLY15 3.8 31.2 1.0
C O:ARG11 3.8 36.7 1.0
C O:GLN9 3.9 31.2 1.0
CG1 O:VAL14 3.9 39.9 1.0
CA O:GLY15 4.1 32.5 1.0
N O:ARG11 4.1 35.3 1.0
CB O:THR8 4.1 33.4 1.0
O O:PRO16 4.2 35.7 1.0
N O:GLY15 4.2 36.0 1.0
CA O:GLN9 4.3 30.0 1.0
CA O:ARG11 4.4 36.0 1.0
CG2 O:THR8 4.5 30.1 1.0
N O:PRO16 4.5 29.9 1.0
CA O:VAL14 4.5 39.4 1.0
CB O:ARG11 4.7 36.4 1.0
C O:THR8 4.7 33.3 1.0
N O:VAL14 4.7 41.8 1.0
CB O:VAL14 4.8 40.0 1.0
CA O:THR8 4.8 32.4 1.0
N O:MET12 4.9 39.4 1.0

Potassium binding site 6 out of 10 in 1is7

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Potassium binding site 6 out of 10 in the Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
P:K2004

b:43.5
occ:1.00
 O P:VAL14 2.5 39.1 1.0
O P:ARG11 2.8 37.2 1.0
OG1 P:THR8 2.8 36.0 1.0
O P:GLN9 2.8 30.7 1.0
O P:GLY15 3.3 34.3 1.0
C P:VAL14 3.5 37.8 1.0
C P:GLY15 3.7 31.4 1.0
N P:GLN9 3.7 30.7 1.0
C P:GLN9 3.9 30.6 1.0
C P:ARG11 3.9 36.5 1.0
CG1 P:VAL14 3.9 36.7 1.0
CA P:GLY15 4.0 31.3 1.0
O P:PRO16 4.1 39.3 1.0
CB P:THR8 4.2 33.2 1.0
N P:GLY15 4.2 34.5 1.0
N P:ARG11 4.2 35.8 1.0
CA P:GLN9 4.3 31.1 1.0
N P:PRO16 4.4 29.8 1.0
CA P:ARG11 4.5 36.6 1.0
CA P:VAL14 4.6 37.6 1.0
CG2 P:THR8 4.6 33.1 1.0
C P:THR8 4.7 31.7 1.0
N P:VAL14 4.7 39.2 1.0
CB P:ARG11 4.8 38.7 1.0
CB P:VAL14 4.8 36.3 1.0
CA P:THR8 4.8 32.5 1.0
CD P:PRO16 4.9 27.9 1.0
N P:MET12 5.0 38.7 1.0

Potassium binding site 7 out of 10 in 1is7

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Potassium binding site 7 out of 10 in the Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:K2005

b:39.9
occ:1.00
 O Q:ARG11 2.5 36.3 1.0
O Q:VAL14 2.6 39.6 1.0
O Q:GLN9 2.7 31.2 1.0
OG1 Q:THR8 2.8 31.7 1.0
O Q:GLY15 3.6 30.9 1.0
C Q:VAL14 3.6 38.3 1.0
C Q:ARG11 3.6 34.4 1.0
CG1 Q:VAL14 3.7 41.6 1.0
C Q:GLN9 3.8 29.9 1.0
N Q:GLN9 3.8 28.4 1.0
N Q:ARG11 3.9 33.5 1.0
C Q:GLY15 4.0 29.2 1.0
CB Q:THR8 4.1 30.2 1.0
CA Q:ARG11 4.2 33.4 1.0
CA Q:GLY15 4.2 30.9 1.0
N Q:GLY15 4.3 36.3 1.0
CA Q:GLN9 4.3 29.1 1.0
O Q:PRO16 4.4 34.7 1.0
CB Q:ARG11 4.4 33.1 1.0
CA Q:VAL14 4.5 40.4 1.0
CG2 Q:THR8 4.5 29.0 1.0
N Q:VAL14 4.6 41.5 1.0
C Q:THR8 4.7 29.4 1.0
CB Q:VAL14 4.7 41.5 1.0
N Q:MET12 4.7 36.3 1.0
N Q:PRO16 4.7 28.5 1.0
CA Q:THR8 4.8 29.9 1.0
N Q:ILE10 4.9 30.9 1.0

Potassium binding site 8 out of 10 in 1is7

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Potassium binding site 8 out of 10 in the Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
R:K2001

b:56.5
occ:1.00
 OG1 R:THR8 2.6 35.6 1.0
O R:GLN9 2.7 34.6 1.0
O R:ARG11 2.7 37.6 1.0
O R:VAL14 2.8 42.1 1.0
N R:GLN9 3.5 31.2 1.0
O R:GLY15 3.5 33.0 1.0
C R:GLN9 3.7 31.6 1.0
C R:VAL14 3.8 39.1 1.0
C R:GLY15 3.8 33.3 1.0
C R:ARG11 3.9 38.7 1.0
CB R:THR8 3.9 35.0 1.0
O R:PRO16 4.0 38.6 1.0
CA R:GLN9 4.1 31.4 1.0
N R:ARG11 4.1 35.3 1.0
CA R:GLY15 4.2 33.5 1.0
CG1 R:VAL14 4.2 40.1 1.0
C R:THR8 4.4 33.0 1.0
N R:GLY15 4.4 37.3 1.0
CG2 R:THR8 4.4 33.2 1.0
CA R:ARG11 4.5 37.4 1.0
N R:PRO16 4.5 31.8 1.0
CA R:THR8 4.5 33.3 1.0
CA R:VAL14 4.8 40.8 1.0
CB R:ARG11 4.8 36.8 1.0
CB R:GLN9 4.9 29.0 1.0
N R:ILE10 4.9 30.7 1.0
N R:VAL14 5.0 42.5 1.0
N R:MET12 5.0 40.9 1.0
CD R:PRO16 5.0 28.5 1.0

Potassium binding site 9 out of 10 in 1is7

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Potassium binding site 9 out of 10 in the Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
S:K2002

b:53.1
occ:1.00
 O S:VAL14 2.6 42.0 1.0
OG1 S:THR8 2.7 36.3 1.0
O S:GLN9 2.7 35.5 1.0
O S:ARG11 2.8 40.0 1.0
O S:GLY15 3.4 32.2 1.0
C S:VAL14 3.6 38.8 1.0
N S:GLN9 3.7 32.4 1.0
C S:GLY15 3.7 32.6 1.0
C S:GLN9 3.8 33.5 1.0
C S:ARG11 3.9 37.9 1.0
CG1 S:VAL14 4.0 42.1 1.0
CB S:THR8 4.1 34.1 1.0
CA S:GLY15 4.1 33.2 1.0
O S:PRO16 4.1 40.5 1.0
N S:ARG11 4.1 34.1 1.0
CA S:GLN9 4.2 32.8 1.0
N S:GLY15 4.3 36.3 1.0
N S:PRO16 4.5 31.2 1.0
CA S:ARG11 4.5 35.2 1.0
CG2 S:THR8 4.5 30.8 1.0
C S:THR8 4.6 33.2 1.0
CA S:VAL14 4.6 40.2 1.0
CA S:THR8 4.7 34.2 1.0
CB S:ARG11 4.8 33.3 1.0
N S:VAL14 4.8 42.1 1.0
CB S:VAL14 4.9 40.6 1.0
N S:ILE10 5.0 34.5 1.0
CD S:PRO16 5.0 28.6 1.0
N S:MET12 5.0 40.4 1.0

Potassium binding site 10 out of 10 in 1is7

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Potassium binding site 10 out of 10 in the Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Crystal Structure of Rat Gtpchi/Gfrp Stimulatory Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
T:K2003

b:38.4
occ:1.00
 O T:VAL14 2.5 40.8 1.0
OG1 T:THR8 2.7 36.4 1.0
O T:ARG11 2.8 39.0 1.0
O T:GLN9 3.0 34.4 1.0
O T:GLY15 3.3 27.4 1.0
C T:VAL14 3.4 38.8 1.0
C T:GLY15 3.6 30.0 1.0
N T:GLN9 3.8 31.3 1.0
CG1 T:VAL14 3.9 39.8 1.0
C T:ARG11 3.9 37.7 1.0
CA T:GLY15 4.0 31.1 1.0
O T:PRO16 4.0 36.3 1.0
C T:GLN9 4.0 33.5 1.0
N T:GLY15 4.1 35.6 1.0
CB T:THR8 4.1 34.1 1.0
N T:ARG11 4.3 35.5 1.0
N T:PRO16 4.3 28.5 1.0
CA T:GLN9 4.4 33.2 1.0
CA T:VAL14 4.5 39.7 1.0
CA T:ARG11 4.6 36.5 1.0
CG2 T:THR8 4.6 33.9 1.0
N T:VAL14 4.7 42.4 1.0
C T:THR8 4.7 32.6 1.0
CB T:VAL14 4.7 40.1 1.0
CA T:THR8 4.8 33.7 1.0
CB T:ARG11 4.8 35.2 1.0
CD T:PRO16 4.8 23.7 1.0
C T:PRO16 5.0 31.9 1.0

Reference:

N.Maita, K.Okada, K.Hatakeyama, T.Hakoshima. Crystal Structure of the Stimulatory Complex of Gtp Cyclohydrolase I and Its Feedback Regulatory Protein Gfrp. Proc.Natl.Acad.Sci.Usa V. 99 1212 2002.
ISSN: ISSN 0027-8424
PubMed: 11818540
DOI: 10.1073/PNAS.022646999
Page generated: Mon Aug 12 04:34:22 2024

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