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Potassium in PDB 1ijv: Human Beta-Defensin-1

Protein crystallography data

The structure of Human Beta-Defensin-1, PDB code: 1ijv was solved by D.M.Hoover, J.Lubkowski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 27.121, 47.243, 53.853, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 19.3

Other elements in 1ijv:

The structure of Human Beta-Defensin-1 also contains other interesting chemical elements:

Bromine (Br) 6 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Human Beta-Defensin-1 (pdb code 1ijv). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Human Beta-Defensin-1, PDB code: 1ijv:

Potassium binding site 1 out of 1 in 1ijv

Go back to Potassium Binding Sites List in 1ijv
Potassium binding site 1 out of 1 in the Human Beta-Defensin-1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Human Beta-Defensin-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K109

b:20.4
occ:1.00
O2 B:SO4101 2.7 9.3 1.0
O B:HOH202 2.8 7.7 1.0
O B:HOH201 3.2 8.3 1.0
CB B:HIS2 3.4 8.9 1.0
O3 B:SO4101 3.4 8.0 1.0
S B:SO4101 3.5 7.0 1.0
ND1 B:HIS2 3.7 7.5 1.0
CG B:HIS2 3.8 9.2 1.0
O4 B:SO4101 4.1 8.2 1.0
CD2 B:TYR28 4.2 8.8 1.0
CE2 B:TYR28 4.2 9.5 1.0
CE1 B:HIS2 4.7 8.2 1.0
CA B:HIS2 4.8 8.2 1.0
CD2 B:HIS2 4.8 6.8 1.0
O1 B:SO4101 4.8 7.7 1.0
N B:HIS2 4.9 6.1 1.0

Reference:

D.M.Hoover, O.Chertov, J.Lubkowski. The Structure of Human Beta-Defensin-1: New Insights Into Structural Properties of Beta-Defensins. J.Biol.Chem. V. 276 39021 2001.
ISSN: ISSN 0021-9258
PubMed: 11486002
DOI: 10.1074/JBC.M103830200
Page generated: Mon Aug 12 04:34:09 2024

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