Atomistry » Potassium » PDB 1gup-1k4c » 1ijv
Atomistry »
  Potassium »
    PDB 1gup-1k4c »
      1ijv »

Potassium in PDB 1ijv: Human Beta-Defensin-1

Protein crystallography data

The structure of Human Beta-Defensin-1, PDB code: 1ijv was solved by D.M.Hoover, J.Lubkowski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 27.121, 47.243, 53.853, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 19.3

Other elements in 1ijv:

The structure of Human Beta-Defensin-1 also contains other interesting chemical elements:

Bromine (Br) 6 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Human Beta-Defensin-1 (pdb code 1ijv). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Human Beta-Defensin-1, PDB code: 1ijv:

Potassium binding site 1 out of 1 in 1ijv

Go back to Potassium Binding Sites List in 1ijv
Potassium binding site 1 out of 1 in the Human Beta-Defensin-1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Human Beta-Defensin-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K109

b:20.4
occ:1.00
O2 B:SO4101 2.7 9.3 1.0
O B:HOH202 2.8 7.7 1.0
O B:HOH201 3.2 8.3 1.0
CB B:HIS2 3.4 8.9 1.0
O3 B:SO4101 3.4 8.0 1.0
S B:SO4101 3.5 7.0 1.0
ND1 B:HIS2 3.7 7.5 1.0
CG B:HIS2 3.8 9.2 1.0
O4 B:SO4101 4.1 8.2 1.0
CD2 B:TYR28 4.2 8.8 1.0
CE2 B:TYR28 4.2 9.5 1.0
CE1 B:HIS2 4.7 8.2 1.0
CA B:HIS2 4.8 8.2 1.0
CD2 B:HIS2 4.8 6.8 1.0
O1 B:SO4101 4.8 7.7 1.0
N B:HIS2 4.9 6.1 1.0

Reference:

D.M.Hoover, O.Chertov, J.Lubkowski. The Structure of Human Beta-Defensin-1: New Insights Into Structural Properties of Beta-Defensins. J.Biol.Chem. V. 276 39021 2001.
ISSN: ISSN 0021-9258
PubMed: 11486002
DOI: 10.1074/JBC.M103830200
Page generated: Sun Dec 13 22:43:38 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy