Potassium in PDB 1g31: GP31 Co-Chaperonin From Bacteriophage T4
Protein crystallography data
The structure of GP31 Co-Chaperonin From Bacteriophage T4, PDB code: 1g31
was solved by
J.F.Hunt,
S.M.Van Der Vies,
L.Henry,
J.Deisenhofer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
2.30
|
Space group
|
P 42 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
157.677,
157.677,
90.932,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
22.5 /
25.4
|
Potassium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Potassium atom in the GP31 Co-Chaperonin From Bacteriophage T4
(pdb code 1g31). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 11 binding sites of Potassium where determined in the
GP31 Co-Chaperonin From Bacteriophage T4, PDB code: 1g31:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Potassium binding site 1 out
of 11 in 1g31
Go back to
Potassium Binding Sites List in 1g31
Potassium binding site 1 out
of 11 in the GP31 Co-Chaperonin From Bacteriophage T4
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of GP31 Co-Chaperonin From Bacteriophage T4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K181
b:62.2
occ:1.00
|
O
|
A:LEU35
|
2.8
|
41.4
|
1.0
|
O
|
A:HOH1235
|
3.6
|
46.3
|
1.0
|
O3
|
A:PO41173
|
3.9
|
0.2
|
1.0
|
C
|
A:LEU35
|
3.9
|
38.2
|
1.0
|
O1
|
A:PO41173
|
3.9
|
0.5
|
1.0
|
CD1
|
A:ILE37
|
4.0
|
36.2
|
1.0
|
CA
|
A:ILE36
|
4.0
|
27.9
|
1.0
|
N
|
A:ILE37
|
4.3
|
23.9
|
1.0
|
P
|
A:PO41173
|
4.3
|
0.7
|
1.0
|
N
|
A:ILE36
|
4.3
|
32.1
|
1.0
|
O4
|
A:PO41173
|
4.5
|
0.1
|
1.0
|
C
|
A:ILE36
|
4.6
|
26.6
|
1.0
|
N
|
A:LEU35
|
4.9
|
43.5
|
1.0
|
CG1
|
A:ILE36
|
4.9
|
18.9
|
1.0
|
|
Potassium binding site 2 out
of 11 in 1g31
Go back to
Potassium Binding Sites List in 1g31
Potassium binding site 2 out
of 11 in the GP31 Co-Chaperonin From Bacteriophage T4
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of GP31 Co-Chaperonin From Bacteriophage T4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K1183
b:45.4
occ:1.00
|
O
|
A:HOH1245
|
2.6
|
52.0
|
1.0
|
O3
|
B:PO4151
|
2.9
|
13.9
|
1.0
|
O4
|
B:PO4151
|
3.5
|
19.6
|
1.0
|
O3
|
B:PO41152
|
3.5
|
60.8
|
1.0
|
O
|
B:HOH1242
|
3.6
|
53.9
|
1.0
|
O2
|
A:PO41153
|
3.6
|
54.0
|
1.0
|
P
|
B:PO4151
|
3.7
|
20.0
|
1.0
|
O
|
B:HOH1209
|
3.8
|
19.1
|
1.0
|
O4
|
A:PO41153
|
4.3
|
63.9
|
1.0
|
O2
|
B:PO4151
|
4.4
|
9.7
|
1.0
|
O2
|
B:PO41163
|
4.5
|
23.2
|
1.0
|
P
|
A:PO41153
|
4.6
|
54.5
|
1.0
|
O1
|
B:PO41152
|
4.7
|
49.9
|
1.0
|
P
|
B:PO41152
|
4.7
|
58.5
|
1.0
|
O4
|
B:PO41163
|
4.8
|
32.2
|
1.0
|
O1
|
B:PO41163
|
4.8
|
38.3
|
1.0
|
NZ
|
A:LYS39
|
4.9
|
14.2
|
1.0
|
|
Potassium binding site 3 out
of 11 in 1g31
Go back to
Potassium Binding Sites List in 1g31
Potassium binding site 3 out
of 11 in the GP31 Co-Chaperonin From Bacteriophage T4
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of GP31 Co-Chaperonin From Bacteriophage T4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K181
b:77.0
occ:1.00
|
O
|
B:LEU35
|
2.9
|
40.3
|
1.0
|
O
|
B:HOH1238
|
3.5
|
54.2
|
1.0
|
C
|
B:LEU35
|
4.0
|
39.1
|
1.0
|
O1
|
B:PO41172
|
4.1
|
94.2
|
1.0
|
CA
|
B:ILE36
|
4.3
|
26.3
|
1.0
|
CD1
|
B:ILE37
|
4.3
|
36.4
|
1.0
|
N
|
B:ILE36
|
4.6
|
35.2
|
1.0
|
N
|
B:ILE37
|
4.6
|
19.9
|
1.0
|
N
|
B:LEU35
|
4.8
|
45.5
|
1.0
|
|
Potassium binding site 4 out
of 11 in 1g31
Go back to
Potassium Binding Sites List in 1g31
Potassium binding site 4 out
of 11 in the GP31 Co-Chaperonin From Bacteriophage T4
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of GP31 Co-Chaperonin From Bacteriophage T4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K1184
b:48.5
occ:1.00
|
O
|
B:HOH1245
|
2.7
|
61.5
|
1.0
|
O3
|
C:PO4151
|
3.1
|
12.7
|
1.0
|
O
|
C:HOH1231
|
3.3
|
39.6
|
1.0
|
O1
|
C:PO41151
|
3.5
|
55.2
|
1.0
|
O2
|
B:PO41152
|
3.6
|
51.0
|
1.0
|
O
|
C:HOH1197
|
3.6
|
24.0
|
1.0
|
O4
|
C:PO4151
|
3.7
|
22.8
|
1.0
|
P
|
C:PO4151
|
4.0
|
23.5
|
1.0
|
O4
|
C:PO41164
|
4.3
|
33.6
|
1.0
|
P
|
B:PO41152
|
4.6
|
58.5
|
1.0
|
O2
|
C:PO4151
|
4.7
|
13.5
|
1.0
|
O1
|
C:PO41164
|
4.7
|
24.4
|
1.0
|
O4
|
B:PO41152
|
4.7
|
70.0
|
1.0
|
NZ
|
B:LYS39
|
4.8
|
10.2
|
1.0
|
P
|
C:PO41151
|
4.8
|
66.8
|
1.0
|
P
|
C:PO41164
|
4.9
|
33.4
|
1.0
|
|
Potassium binding site 5 out
of 11 in 1g31
Go back to
Potassium Binding Sites List in 1g31
Potassium binding site 5 out
of 11 in the GP31 Co-Chaperonin From Bacteriophage T4
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of GP31 Co-Chaperonin From Bacteriophage T4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K181
b:86.5
occ:1.00
|
O
|
C:LEU35
|
2.8
|
46.8
|
1.0
|
O
|
C:HOH1226
|
3.0
|
42.3
|
1.0
|
O1
|
C:PO41171
|
3.4
|
0.4
|
1.0
|
C
|
C:LEU35
|
4.0
|
43.3
|
1.0
|
CD1
|
C:ILE37
|
4.2
|
38.2
|
1.0
|
CA
|
C:ILE36
|
4.4
|
23.6
|
1.0
|
P
|
C:PO41171
|
4.6
|
0.1
|
1.0
|
N
|
C:ILE37
|
4.6
|
16.3
|
1.0
|
N
|
C:LEU35
|
4.6
|
44.8
|
1.0
|
N
|
C:ILE36
|
4.7
|
35.2
|
1.0
|
CA
|
C:LEU35
|
5.0
|
48.8
|
1.0
|
|
Potassium binding site 6 out
of 11 in 1g31
Go back to
Potassium Binding Sites List in 1g31
Potassium binding site 6 out
of 11 in the GP31 Co-Chaperonin From Bacteriophage T4
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of GP31 Co-Chaperonin From Bacteriophage T4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K181
b:79.5
occ:1.00
|
O
|
D:LEU35
|
2.9
|
41.0
|
1.0
|
O
|
D:HOH261
|
3.2
|
83.6
|
1.0
|
C
|
D:LEU35
|
4.0
|
39.9
|
1.0
|
CD1
|
D:ILE37
|
4.1
|
39.4
|
1.0
|
CA
|
D:ILE36
|
4.2
|
24.2
|
1.0
|
N
|
D:ILE37
|
4.5
|
22.0
|
1.0
|
N
|
D:ILE36
|
4.5
|
33.2
|
1.0
|
C
|
D:ILE36
|
4.9
|
27.1
|
1.0
|
N
|
D:LEU35
|
5.0
|
45.4
|
1.0
|
|
Potassium binding site 7 out
of 11 in 1g31
Go back to
Potassium Binding Sites List in 1g31
Potassium binding site 7 out
of 11 in the GP31 Co-Chaperonin From Bacteriophage T4
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 7 of GP31 Co-Chaperonin From Bacteriophage T4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:K181
b:89.7
occ:1.00
|
O
|
E:LEU35
|
2.8
|
46.1
|
1.0
|
O
|
E:HOH328
|
3.4
|
0.8
|
1.0
|
C
|
E:LEU35
|
4.0
|
52.5
|
1.0
|
CD1
|
E:ILE37
|
4.1
|
38.6
|
1.0
|
CA
|
E:ILE36
|
4.3
|
26.0
|
1.0
|
N
|
E:ILE37
|
4.5
|
21.6
|
1.0
|
N
|
E:ILE36
|
4.6
|
39.0
|
1.0
|
N
|
E:LEU35
|
4.8
|
56.8
|
1.0
|
C
|
E:ILE36
|
4.9
|
28.3
|
1.0
|
|
Potassium binding site 8 out
of 11 in 1g31
Go back to
Potassium Binding Sites List in 1g31
Potassium binding site 8 out
of 11 in the GP31 Co-Chaperonin From Bacteriophage T4
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 8 of GP31 Co-Chaperonin From Bacteriophage T4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:K181
b:80.0
occ:1.00
|
O
|
F:LEU35
|
3.1
|
46.1
|
1.0
|
O
|
F:HOH395
|
3.4
|
54.0
|
1.0
|
C
|
F:LEU35
|
4.2
|
37.9
|
1.0
|
CD1
|
F:ILE37
|
4.4
|
36.8
|
1.0
|
CA
|
F:ILE36
|
4.5
|
21.7
|
1.0
|
N
|
F:ILE37
|
4.8
|
15.6
|
1.0
|
N
|
F:ILE36
|
4.8
|
33.3
|
1.0
|
N
|
F:LEU35
|
4.9
|
46.9
|
1.0
|
|
Potassium binding site 9 out
of 11 in 1g31
Go back to
Potassium Binding Sites List in 1g31
Potassium binding site 9 out
of 11 in the GP31 Co-Chaperonin From Bacteriophage T4
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 9 of GP31 Co-Chaperonin From Bacteriophage T4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:K1181
b:45.1
occ:1.00
|
O
|
G:HOH1215
|
2.7
|
69.0
|
1.0
|
O3
|
G:PO4151
|
3.1
|
17.1
|
1.0
|
O
|
G:HOH1245
|
3.3
|
46.6
|
1.0
|
O4
|
G:PO4151
|
3.4
|
22.1
|
1.0
|
O3
|
G:PO41154
|
3.5
|
51.9
|
1.0
|
P
|
G:PO4151
|
3.8
|
23.7
|
1.0
|
O
|
G:HOH1212
|
3.8
|
22.0
|
1.0
|
O2
|
G:PO4151
|
4.6
|
14.5
|
1.0
|
P
|
G:PO41161
|
4.7
|
35.1
|
1.0
|
O2
|
G:PO41161
|
4.7
|
33.5
|
1.0
|
O1
|
G:PO41154
|
4.7
|
44.1
|
1.0
|
P
|
G:PO41154
|
4.8
|
63.5
|
1.0
|
NZ
|
F:LYS39
|
4.9
|
16.4
|
1.0
|
O1
|
G:PO4151
|
5.0
|
13.7
|
1.0
|
|
Potassium binding site 10 out
of 11 in 1g31
Go back to
Potassium Binding Sites List in 1g31
Potassium binding site 10 out
of 11 in the GP31 Co-Chaperonin From Bacteriophage T4
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 10 of GP31 Co-Chaperonin From Bacteriophage T4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:K181
b:77.1
occ:1.00
|
O
|
G:LEU35
|
2.9
|
41.9
|
1.0
|
O
|
G:HOH1241
|
3.5
|
60.2
|
1.0
|
O1
|
G:PO41174
|
3.7
|
0.8
|
1.0
|
C
|
G:LEU35
|
4.1
|
46.2
|
1.0
|
CD1
|
G:ILE37
|
4.2
|
33.8
|
1.0
|
CA
|
G:ILE36
|
4.5
|
25.6
|
1.0
|
N
|
G:ILE37
|
4.7
|
20.2
|
1.0
|
N
|
G:ILE36
|
4.8
|
39.9
|
1.0
|
N
|
G:LEU35
|
4.9
|
48.7
|
1.0
|
P
|
G:PO41174
|
5.0
|
1.0
|
1.0
|
|
Reference:
J.F.Hunt,
S.M.Van Der Vies,
L.Henry,
J.Deisenhofer.
Structural Adaptations in the Specialized Bacteriophage T4 Co-Chaperonin GP31 Expand the Size of the Anfinsen Cage. Cell(Cambridge,Mass.) V. 90 361 1997.
ISSN: ISSN 0092-8674
PubMed: 9244309
DOI: 10.1016/S0092-8674(00)80343-8
Page generated: Mon Aug 12 04:29:57 2024
|