Atomistry » Potassium » PDB 1d7v-1gmk » 1elq
Atomistry »
  Potassium »
    PDB 1d7v-1gmk »
      1elq »

Potassium in PDB 1elq: Crystal Structure of the Cystine C-S Lyase C-Des

Protein crystallography data

The structure of Crystal Structure of the Cystine C-S Lyase C-Des, PDB code: 1elq was solved by T.Clausen, J.T.Kaiser, C.Steegborn, R.Huber, D.Kessler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.400, 65.400, 170.100, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 24.9

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the Cystine C-S Lyase C-Des (pdb code 1elq). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of the Cystine C-S Lyase C-Des, PDB code: 1elq:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 1elq

Go back to Potassium Binding Sites List in 1elq
Potassium binding site 1 out of 2 in the Crystal Structure of the Cystine C-S Lyase C-Des


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the Cystine C-S Lyase C-Des within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1001

b:27.9
occ:1.00
O A:VAL322 2.6 27.8 1.0
O A:LEU319 2.6 26.3 1.0
O A:ASN317 2.8 25.8 1.0
O A:LEU316 3.1 20.2 1.0
O A:HOH1275 3.2 25.9 1.0
C A:ASN317 3.3 24.0 1.0
CA A:ASN317 3.5 22.7 1.0
C A:VAL322 3.7 27.9 1.0
C A:LEU319 3.8 25.9 1.0
O A:HOH1060 3.9 39.5 1.0
C A:LEU316 4.1 23.7 1.0
N A:LEU319 4.2 25.9 1.0
N A:ASN317 4.3 23.7 1.0
CD2 A:HIS323 4.3 35.4 1.0
N A:GLN318 4.4 23.8 1.0
N A:VAL322 4.5 28.4 1.0
CA A:LEU319 4.5 26.1 1.0
CA A:VAL322 4.6 26.1 1.0
CB A:VAL322 4.6 22.2 1.0
N A:HIS323 4.6 26.0 1.0
CA A:HIS323 4.6 25.5 1.0
C A:GLN318 4.7 27.2 1.0
N A:PRO320 4.7 27.4 1.0
CB A:ASN317 4.7 24.4 1.0
O A:PRO320 4.8 27.3 1.0
C A:PRO320 4.8 26.5 1.0
CA A:PRO320 4.8 27.7 1.0
NE2 A:HIS323 5.0 38.6 1.0
CA A:GLN318 5.0 26.1 1.0
OD1 A:ASN317 5.0 28.4 1.0

Potassium binding site 2 out of 2 in 1elq

Go back to Potassium Binding Sites List in 1elq
Potassium binding site 2 out of 2 in the Crystal Structure of the Cystine C-S Lyase C-Des


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of the Cystine C-S Lyase C-Des within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K1002

b:34.5
occ:1.00
O B:VAL322 2.7 27.2 1.0
O B:LEU319 2.7 33.3 1.0
O B:ASN317 2.8 32.1 1.0
O B:HOH1102 3.1 29.4 1.0
O B:LEU316 3.1 24.0 1.0
C B:ASN317 3.2 31.3 1.0
CA B:ASN317 3.4 29.7 1.0
C B:LEU319 3.8 29.9 1.0
C B:VAL322 3.8 25.8 1.0
O B:HOH1296 3.9 40.5 1.0
C B:LEU316 4.0 28.2 1.0
N B:LEU319 4.2 29.5 1.0
N B:ASN317 4.2 28.1 1.0
N B:GLN318 4.2 32.3 1.0
O B:HOH1173 4.4 55.3 1.0
N B:VAL322 4.5 27.8 1.0
C B:GLN318 4.6 31.4 1.0
CA B:LEU319 4.6 30.7 1.0
CB B:ASN317 4.6 28.8 1.0
CA B:VAL322 4.6 24.0 1.0
N B:PRO320 4.7 31.9 1.0
CD2 B:HIS323 4.7 36.2 1.0
N B:HIS323 4.8 25.1 1.0
CA B:HIS323 4.8 27.3 1.0
CA B:PRO320 4.8 31.8 1.0
CB B:VAL322 4.8 22.3 1.0
CA B:GLN318 4.8 32.0 1.0
C B:PRO320 4.8 28.7 1.0
O B:PRO320 4.9 30.5 1.0
OD1 B:ASN317 5.0 31.1 1.0

Reference:

T.Clausen, J.T.Kaiser, C.Steegborn, R.Huber, D.Kessler. Crystal Structure of the Cystine C-S Lyase From Synechocystis: Stabilization of Cysteine Persulfide For Fes Cluster Biosynthesis. Proc.Natl.Acad.Sci.Usa V. 97 3856 2000.
ISSN: ISSN 0027-8424
PubMed: 10760256
DOI: 10.1073/PNAS.97.8.3856
Page generated: Sun Dec 13 22:42:40 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy