Potassium in PDB 1cs0: Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
Enzymatic activity of Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
All present enzymatic activity of Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde:
6.3.5.5;
Protein crystallography data
The structure of Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde, PDB code: 1cs0
was solved by
J.B.Thoden,
X.Huang,
F.M.Raushel,
H.M.Holden,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
2.00
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
151.700,
163.800,
332.600,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
n/a /
n/a
|
Other elements in 1cs0:
The structure of Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde also contains other interesting chemical elements:
Potassium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
33;
Binding sites:
The binding sites of Potassium atom in the Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
(pdb code 1cs0). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 33 binding sites of Potassium where determined in the
Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde, PDB code: 1cs0:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Potassium binding site 1 out
of 33 in 1cs0
Go back to
Potassium Binding Sites List in 1cs0
Potassium binding site 1 out
of 33 in the Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K5003
b:19.6
occ:1.00
|
O
|
A:ILE242
|
2.6
|
20.1
|
1.0
|
OE2
|
A:GLU215
|
2.7
|
18.0
|
1.0
|
O
|
A:ASP238
|
2.7
|
11.1
|
1.0
|
OG
|
A:SER247
|
2.7
|
13.2
|
1.0
|
O
|
A:ALA239
|
2.8
|
20.1
|
1.0
|
OD1
|
A:ASN236
|
2.8
|
15.4
|
1.0
|
C
|
A:ALA239
|
3.5
|
31.2
|
1.0
|
C
|
A:ASP238
|
3.5
|
19.6
|
1.0
|
CG
|
A:ASN236
|
3.7
|
11.3
|
1.0
|
CD
|
A:GLU215
|
3.7
|
16.9
|
1.0
|
CB
|
A:SER247
|
3.8
|
11.8
|
1.0
|
C
|
A:ILE242
|
3.8
|
20.9
|
1.0
|
CB
|
A:ASN236
|
3.8
|
10.6
|
1.0
|
CB
|
A:GLU215
|
3.9
|
16.7
|
1.0
|
CG
|
A:GLU215
|
4.1
|
9.3
|
1.0
|
N
|
A:ALA239
|
4.2
|
14.7
|
1.0
|
N
|
A:MET240
|
4.2
|
14.0
|
1.0
|
CA
|
A:ALA239
|
4.2
|
12.6
|
1.0
|
CB
|
A:ASP238
|
4.3
|
13.1
|
1.0
|
O2'
|
A:ADP5000
|
4.4
|
15.1
|
1.0
|
CB
|
A:ILE242
|
4.4
|
22.1
|
1.0
|
C
|
A:HIS243
|
4.4
|
17.5
|
1.0
|
CA
|
A:MET240
|
4.4
|
11.9
|
1.0
|
O
|
A:HIS243
|
4.5
|
17.7
|
1.0
|
CA
|
A:ASP238
|
4.5
|
14.2
|
1.0
|
CA
|
A:ILE242
|
4.5
|
21.4
|
1.0
|
N
|
A:THR244
|
4.5
|
20.9
|
1.0
|
N
|
A:ILE242
|
4.5
|
17.5
|
1.0
|
CA
|
A:THR244
|
4.6
|
18.1
|
1.0
|
OE1
|
A:GLU215
|
4.6
|
23.6
|
1.0
|
CG2
|
A:THR244
|
4.8
|
25.3
|
1.0
|
CG2
|
A:ILE242
|
4.8
|
12.1
|
1.0
|
N
|
A:HIS243
|
4.9
|
16.2
|
1.0
|
ND2
|
A:ASN236
|
4.9
|
14.6
|
1.0
|
N
|
A:ASP238
|
5.0
|
11.9
|
1.0
|
C
|
A:MET240
|
5.0
|
18.1
|
1.0
|
|
Potassium binding site 2 out
of 33 in 1cs0
Go back to
Potassium Binding Sites List in 1cs0
Potassium binding site 2 out
of 33 in the Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K5004
b:21.6
occ:1.00
|
O
|
A:HOH5912
|
2.2
|
59.7
|
1.0
|
OE1
|
A:GLU299
|
2.7
|
17.9
|
1.0
|
O
|
A:MET300
|
2.7
|
24.1
|
1.0
|
O
|
A:HOH5158
|
2.9
|
13.3
|
1.0
|
OE1
|
A:GLU127
|
3.0
|
24.1
|
1.0
|
O
|
A:HOH5252
|
3.0
|
18.2
|
1.0
|
O
|
A:ALA126
|
3.2
|
26.4
|
1.0
|
OD1
|
A:ASN301
|
3.4
|
19.8
|
1.0
|
O
|
A:HOH5715
|
3.6
|
28.4
|
1.0
|
CD
|
A:GLU127
|
3.6
|
13.3
|
1.0
|
C
|
A:MET300
|
3.7
|
14.9
|
1.0
|
MN
|
A:MN5001
|
3.7
|
21.2
|
1.0
|
CD
|
A:GLU299
|
3.7
|
21.4
|
1.0
|
OE2
|
A:GLU127
|
4.0
|
21.4
|
1.0
|
NH1
|
A:ARG129
|
4.0
|
16.4
|
1.0
|
C
|
A:ALA126
|
4.0
|
17.7
|
1.0
|
N
|
A:MET300
|
4.2
|
23.5
|
1.0
|
CG
|
A:ASN301
|
4.3
|
14.1
|
1.0
|
CZ
|
A:ARG129
|
4.4
|
17.1
|
1.0
|
CA
|
A:GLU127
|
4.4
|
19.1
|
1.0
|
N
|
A:ASN301
|
4.4
|
22.3
|
1.0
|
CB
|
A:GLU299
|
4.5
|
13.3
|
1.0
|
CA
|
A:ASN301
|
4.5
|
19.5
|
1.0
|
NH2
|
A:ARG129
|
4.5
|
16.2
|
1.0
|
O
|
A:HOH5237
|
4.5
|
20.1
|
1.0
|
CA
|
A:MET300
|
4.6
|
21.4
|
1.0
|
N
|
A:GLU127
|
4.6
|
17.9
|
1.0
|
CG
|
A:GLU299
|
4.6
|
11.2
|
1.0
|
O3B
|
A:ADP5000
|
4.6
|
16.4
|
1.0
|
OE2
|
A:GLU299
|
4.6
|
14.6
|
1.0
|
CG
|
A:GLU127
|
4.7
|
12.7
|
1.0
|
CD
|
A:PRO302
|
4.8
|
25.4
|
1.0
|
CB
|
A:ALA126
|
4.9
|
13.2
|
1.0
|
CB
|
A:ASN301
|
4.9
|
18.4
|
1.0
|
CA
|
A:ALA126
|
5.0
|
27.8
|
1.0
|
O
|
A:HOH5253
|
5.0
|
17.2
|
1.0
|
|
Potassium binding site 3 out
of 33 in 1cs0
Go back to
Potassium Binding Sites List in 1cs0
Potassium binding site 3 out
of 33 in the Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K5008
b:42.6
occ:1.00
|
O2B
|
A:ADP5006
|
2.5
|
53.3
|
1.0
|
OE2
|
A:GLU841
|
2.7
|
21.7
|
1.0
|
O3B
|
A:ADP5006
|
3.0
|
26.0
|
1.0
|
OE1
|
A:GLU841
|
3.2
|
51.3
|
1.0
|
OD1
|
A:ASN843
|
3.2
|
37.8
|
1.0
|
PB
|
A:ADP5006
|
3.3
|
24.8
|
1.0
|
CD
|
A:GLU841
|
3.3
|
32.0
|
1.0
|
O
|
A:HOH5613
|
3.5
|
47.5
|
1.0
|
MN
|
A:MN5007
|
3.9
|
28.6
|
1.0
|
O
|
A:HOH5716
|
4.0
|
52.7
|
1.0
|
O
|
A:HOH5614
|
4.0
|
14.8
|
1.0
|
CG
|
A:ASN843
|
4.0
|
39.5
|
1.0
|
O
|
A:HOH5582
|
4.1
|
37.9
|
1.0
|
O
|
A:HOH5948
|
4.1
|
53.5
|
1.0
|
O
|
A:HOH5166
|
4.2
|
31.8
|
1.0
|
ND2
|
A:ASN843
|
4.3
|
26.6
|
1.0
|
O3A
|
A:ADP5006
|
4.4
|
23.2
|
1.0
|
O1B
|
A:ADP5006
|
4.5
|
24.8
|
1.0
|
O2A
|
A:ADP5006
|
4.8
|
20.8
|
1.0
|
CG
|
A:GLU841
|
4.8
|
16.3
|
1.0
|
OE1
|
A:GLU673
|
4.8
|
71.2
|
1.0
|
O
|
A:HOH5717
|
4.9
|
48.0
|
1.0
|
|
Potassium binding site 4 out
of 33 in 1cs0
Go back to
Potassium Binding Sites List in 1cs0
Potassium binding site 4 out
of 33 in the Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K5009
b:22.0
occ:1.00
|
O
|
A:VAL787
|
2.6
|
19.9
|
1.0
|
O
|
A:GLN784
|
2.7
|
18.7
|
1.0
|
OE2
|
A:GLU761
|
2.7
|
22.0
|
1.0
|
ND1
|
A:HIS781
|
2.7
|
26.6
|
1.0
|
O
|
A:GLU783
|
2.8
|
14.4
|
1.0
|
OG
|
A:SER792
|
2.9
|
17.7
|
1.0
|
C
|
A:GLN784
|
3.4
|
27.7
|
1.0
|
C
|
A:GLU783
|
3.5
|
21.3
|
1.0
|
CB
|
A:GLU761
|
3.6
|
19.7
|
1.0
|
CE1
|
A:HIS781
|
3.6
|
10.3
|
1.0
|
CD
|
A:GLU761
|
3.7
|
33.1
|
1.0
|
C
|
A:VAL787
|
3.7
|
17.3
|
1.0
|
CG
|
A:HIS781
|
3.8
|
19.0
|
1.0
|
CB
|
A:SER792
|
3.8
|
11.5
|
1.0
|
CB
|
A:HIS781
|
3.9
|
40.2
|
1.0
|
N
|
A:ALA785
|
4.0
|
14.4
|
1.0
|
CB
|
A:VAL787
|
4.1
|
17.9
|
1.0
|
CB
|
A:GLU783
|
4.1
|
12.4
|
1.0
|
CA
|
A:ALA785
|
4.1
|
22.2
|
1.0
|
N
|
A:GLN784
|
4.2
|
16.3
|
1.0
|
CA
|
A:GLN784
|
4.2
|
17.5
|
1.0
|
N
|
A:VAL787
|
4.2
|
13.9
|
1.0
|
CG
|
A:GLU761
|
4.3
|
20.3
|
1.0
|
CA
|
A:VAL787
|
4.3
|
15.8
|
1.0
|
O2'
|
A:ADP5006
|
4.3
|
26.9
|
1.0
|
CA
|
A:GLU783
|
4.4
|
15.1
|
1.0
|
CG1
|
A:VAL787
|
4.4
|
7.4
|
1.0
|
O
|
A:HOH5619
|
4.4
|
24.9
|
1.0
|
OE1
|
A:GLU761
|
4.6
|
23.6
|
1.0
|
C
|
A:HIS788
|
4.6
|
29.0
|
1.0
|
O
|
A:HIS788
|
4.6
|
21.4
|
1.0
|
N
|
A:SER789
|
4.6
|
17.4
|
1.0
|
CA
|
A:SER789
|
4.7
|
16.3
|
1.0
|
C
|
A:ALA785
|
4.8
|
21.4
|
1.0
|
N
|
A:GLY786
|
4.8
|
18.1
|
1.0
|
NE2
|
A:HIS781
|
4.8
|
19.9
|
1.0
|
N
|
A:HIS788
|
4.8
|
15.6
|
1.0
|
CA
|
A:GLU761
|
4.9
|
16.9
|
1.0
|
N
|
A:GLU783
|
4.9
|
26.8
|
1.0
|
CD2
|
A:HIS781
|
4.9
|
17.2
|
1.0
|
|
Potassium binding site 5 out
of 33 in 1cs0
Go back to
Potassium Binding Sites List in 1cs0
Potassium binding site 5 out
of 33 in the Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K5019
b:38.7
occ:1.00
|
O
|
A:HOH5730
|
2.6
|
51.5
|
1.0
|
OG1
|
A:THR114
|
2.8
|
38.9
|
1.0
|
O
|
A:GLY112
|
2.8
|
30.2
|
1.0
|
O
|
A:ASP84
|
2.8
|
33.0
|
1.0
|
O
|
A:HOH5172
|
2.8
|
47.7
|
1.0
|
O
|
A:HOH5173
|
3.0
|
55.3
|
1.0
|
N
|
A:THR114
|
3.7
|
23.7
|
1.0
|
C
|
A:ASP84
|
3.7
|
40.2
|
1.0
|
CB
|
A:THR114
|
3.8
|
29.4
|
1.0
|
C
|
A:GLY112
|
3.9
|
59.2
|
1.0
|
CA
|
A:ASP84
|
4.1
|
32.5
|
1.0
|
CB
|
A:ASP84
|
4.2
|
39.6
|
1.0
|
CA
|
A:THR114
|
4.4
|
33.6
|
1.0
|
C
|
A:VAL113
|
4.4
|
26.4
|
1.0
|
OD2
|
A:ASP84
|
4.5
|
55.9
|
1.0
|
CA
|
A:VAL113
|
4.5
|
42.6
|
1.0
|
O
|
A:HOH5231
|
4.6
|
39.0
|
1.0
|
N
|
A:VAL113
|
4.7
|
47.5
|
1.0
|
CG
|
A:ASP84
|
4.8
|
65.1
|
1.0
|
O
|
A:ASP6
|
4.9
|
32.3
|
1.0
|
N
|
A:ALA85
|
4.9
|
41.6
|
1.0
|
CA
|
A:GLY112
|
5.0
|
18.2
|
1.0
|
|
Potassium binding site 6 out
of 33 in 1cs0
Go back to
Potassium Binding Sites List in 1cs0
Potassium binding site 6 out
of 33 in the Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K5021
b:30.1
occ:1.00
|
O3
|
A:PO45005
|
2.7
|
12.6
|
1.0
|
OE1
|
A:GLN285
|
2.8
|
16.6
|
1.0
|
O
|
A:HOH5161
|
2.9
|
2.7
|
1.0
|
OE1
|
A:GLU217
|
3.0
|
26.0
|
1.0
|
OD1
|
A:ASN283
|
3.1
|
38.0
|
1.0
|
OG1
|
A:THR244
|
3.2
|
25.0
|
1.0
|
O
|
A:HOH5162
|
3.4
|
18.1
|
1.0
|
CD
|
A:GLN285
|
3.5
|
25.4
|
1.0
|
MN
|
A:MN5002
|
3.7
|
18.1
|
1.0
|
ND2
|
A:ASN283
|
3.7
|
29.3
|
1.0
|
CG
|
A:ASN283
|
3.7
|
26.3
|
1.0
|
O
|
A:HOH5157
|
3.7
|
25.9
|
1.0
|
CG
|
A:GLN285
|
3.7
|
20.0
|
1.0
|
CD
|
A:GLU217
|
3.9
|
83.3
|
1.0
|
P
|
A:PO45005
|
3.9
|
18.9
|
1.0
|
O2
|
A:PO45005
|
3.9
|
15.1
|
1.0
|
ND2
|
A:ASN301
|
4.2
|
18.3
|
1.0
|
CB
|
A:THR244
|
4.2
|
32.7
|
1.0
|
OG
|
A:SER307
|
4.3
|
23.1
|
1.0
|
CG2
|
A:THR244
|
4.5
|
25.3
|
1.0
|
OE2
|
A:GLU299
|
4.6
|
14.6
|
1.0
|
CG
|
A:GLU217
|
4.6
|
21.0
|
1.0
|
OE2
|
A:GLU217
|
4.6
|
21.8
|
1.0
|
CB
|
A:SER307
|
4.7
|
11.7
|
1.0
|
NE2
|
A:GLN285
|
4.7
|
13.0
|
1.0
|
NH1
|
A:ARG306
|
4.8
|
7.2
|
1.0
|
O4
|
A:PO45005
|
4.8
|
22.5
|
1.0
|
O1
|
A:PO45005
|
4.9
|
24.4
|
1.0
|
|
Potassium binding site 7 out
of 33 in 1cs0
Go back to
Potassium Binding Sites List in 1cs0
Potassium binding site 7 out
of 33 in the Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 7 of Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K5022
b:38.1
occ:1.00
|
O
|
A:HOH5261
|
2.5
|
32.1
|
1.0
|
O
|
A:ALA144
|
3.0
|
24.2
|
1.0
|
O
|
A:THR143
|
3.1
|
31.2
|
1.0
|
OG1
|
A:THR143
|
3.1
|
24.2
|
1.0
|
O
|
A:HOH5262
|
3.4
|
29.6
|
1.0
|
C
|
A:ALA144
|
3.6
|
19.0
|
1.0
|
C
|
A:THR143
|
3.8
|
37.9
|
1.0
|
O
|
A:HOH5294
|
3.8
|
29.9
|
1.0
|
CA
|
A:ARG145
|
3.9
|
22.4
|
1.0
|
N
|
A:ARG145
|
4.0
|
16.7
|
1.0
|
CB
|
A:THR143
|
4.2
|
22.5
|
1.0
|
CA
|
A:THR143
|
4.4
|
20.2
|
1.0
|
N
|
A:SER146
|
4.5
|
24.9
|
1.0
|
N
|
A:ALA144
|
4.5
|
18.7
|
1.0
|
N
|
A:THR143
|
4.6
|
25.4
|
1.0
|
CA
|
A:ALA144
|
4.6
|
17.9
|
1.0
|
C
|
A:ARG145
|
4.6
|
31.6
|
1.0
|
OD2
|
A:ASP133
|
4.7
|
42.1
|
1.0
|
O
|
A:HOH5154
|
4.8
|
25.0
|
1.0
|
OG
|
A:SER146
|
4.9
|
38.8
|
1.0
|
|
Potassium binding site 8 out
of 33 in 1cs0
Go back to
Potassium Binding Sites List in 1cs0
Potassium binding site 8 out
of 33 in the Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 8 of Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K5020
b:38.8
occ:1.00
|
O
|
B:ASP112
|
2.7
|
17.3
|
1.0
|
O
|
B:HOH5057
|
2.8
|
45.6
|
1.0
|
O
|
B:HIS16
|
2.8
|
27.9
|
1.0
|
O
|
B:HOH5058
|
3.1
|
25.3
|
1.0
|
O
|
B:HOH5173
|
3.1
|
43.5
|
1.0
|
O
|
A:HOH5535
|
3.1
|
32.4
|
1.0
|
C
|
B:ASP112
|
3.8
|
19.6
|
1.0
|
C
|
B:HIS16
|
4.0
|
28.3
|
1.0
|
O
|
B:HOH5059
|
4.1
|
53.9
|
1.0
|
O
|
A:HOH5536
|
4.2
|
26.9
|
1.0
|
NH2
|
A:ARG494
|
4.2
|
22.7
|
1.0
|
CA
|
B:ILE113
|
4.4
|
30.3
|
1.0
|
CA
|
B:GLY17
|
4.4
|
12.1
|
1.0
|
CL
|
B:CL5017
|
4.5
|
30.2
|
1.0
|
CB
|
B:ASP112
|
4.6
|
21.3
|
1.0
|
N
|
B:ILE113
|
4.6
|
16.6
|
1.0
|
CZ
|
A:ARG494
|
4.7
|
19.8
|
1.0
|
O
|
B:HOH5066
|
4.7
|
27.8
|
1.0
|
N
|
B:GLY17
|
4.7
|
29.0
|
1.0
|
NH1
|
A:ARG494
|
4.8
|
21.4
|
1.0
|
CA
|
B:ASP112
|
4.9
|
25.1
|
1.0
|
CG2
|
B:ILE113
|
4.9
|
16.6
|
1.0
|
|
Potassium binding site 9 out
of 33 in 1cs0
Go back to
Potassium Binding Sites List in 1cs0
Potassium binding site 9 out
of 33 in the Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 9 of Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K5026
b:15.1
occ:1.00
|
O
|
C:ASP238
|
2.7
|
20.5
|
1.0
|
OE2
|
C:GLU215
|
2.8
|
15.6
|
1.0
|
OG
|
C:SER247
|
2.8
|
12.8
|
1.0
|
O
|
C:ILE242
|
2.8
|
16.6
|
1.0
|
O
|
C:ALA239
|
2.9
|
13.5
|
1.0
|
OD1
|
C:ASN236
|
2.9
|
23.0
|
1.0
|
C
|
C:ASP238
|
3.5
|
13.3
|
1.0
|
C
|
C:ALA239
|
3.5
|
33.7
|
1.0
|
CG
|
C:ASN236
|
3.7
|
14.0
|
1.0
|
CB
|
C:ASN236
|
3.7
|
12.2
|
1.0
|
CD
|
C:GLU215
|
3.8
|
12.4
|
1.0
|
CB
|
C:SER247
|
3.8
|
12.1
|
1.0
|
C
|
C:ILE242
|
3.9
|
17.1
|
1.0
|
CB
|
C:GLU215
|
4.0
|
9.9
|
1.0
|
CG
|
C:GLU215
|
4.1
|
10.5
|
1.0
|
N
|
C:ALA239
|
4.1
|
11.4
|
1.0
|
CA
|
C:ALA239
|
4.2
|
14.7
|
1.0
|
N
|
C:MET240
|
4.2
|
11.2
|
1.0
|
CB
|
C:ASP238
|
4.3
|
9.7
|
1.0
|
O2'
|
C:ADP5023
|
4.3
|
15.6
|
1.0
|
O
|
C:HIS243
|
4.4
|
18.9
|
1.0
|
CB
|
C:ILE242
|
4.4
|
12.3
|
1.0
|
N
|
C:ILE242
|
4.4
|
11.2
|
1.0
|
C
|
C:HIS243
|
4.4
|
18.6
|
1.0
|
CA
|
C:ASP238
|
4.4
|
9.8
|
1.0
|
N
|
C:THR244
|
4.5
|
8.4
|
1.0
|
CA
|
C:ILE242
|
4.5
|
12.3
|
1.0
|
CA
|
C:MET240
|
4.5
|
14.3
|
1.0
|
CA
|
C:THR244
|
4.5
|
10.5
|
1.0
|
OE1
|
C:GLU215
|
4.7
|
17.8
|
1.0
|
ND2
|
C:ASN236
|
4.9
|
13.8
|
1.0
|
N
|
C:ASP238
|
4.9
|
17.7
|
1.0
|
CG2
|
C:ILE242
|
4.9
|
12.8
|
1.0
|
N
|
C:HIS243
|
5.0
|
14.4
|
1.0
|
|
Potassium binding site 10 out
of 33 in 1cs0
Go back to
Potassium Binding Sites List in 1cs0
Potassium binding site 10 out
of 33 in the Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 10 of Crystal Structure of Carbamoyl Phosphate Synthetase Complexed at CYS269 in the Small Subunit with the Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K5027
b:22.0
occ:1.00
|
OE1
|
C:GLU299
|
2.6
|
14.7
|
1.0
|
O
|
C:MET300
|
2.7
|
15.1
|
1.0
|
O
|
C:HOH1849
|
2.8
|
42.0
|
1.0
|
OE1
|
C:GLU127
|
2.8
|
25.8
|
1.0
|
O
|
C:HOH1250
|
2.9
|
17.5
|
1.0
|
O
|
C:HOH1157
|
3.2
|
18.6
|
1.0
|
O
|
C:ALA126
|
3.3
|
21.1
|
1.0
|
OD1
|
C:ASN301
|
3.4
|
16.1
|
1.0
|
O
|
C:HOH1850
|
3.5
|
28.2
|
1.0
|
C
|
C:MET300
|
3.7
|
21.2
|
1.0
|
CD
|
C:GLU127
|
3.7
|
41.0
|
1.0
|
CD
|
C:GLU299
|
3.7
|
22.7
|
1.0
|
MN
|
C:MN5024
|
3.7
|
17.0
|
1.0
|
C
|
C:ALA126
|
4.0
|
26.6
|
1.0
|
NH1
|
C:ARG129
|
4.2
|
21.2
|
1.0
|
N
|
C:MET300
|
4.2
|
20.2
|
1.0
|
CG
|
C:ASN301
|
4.2
|
25.5
|
1.0
|
OE2
|
C:GLU127
|
4.3
|
24.3
|
1.0
|
O
|
C:HOH1236
|
4.3
|
17.1
|
1.0
|
CA
|
C:GLU127
|
4.3
|
11.5
|
1.0
|
CB
|
C:GLU299
|
4.4
|
10.7
|
1.0
|
CA
|
C:ASN301
|
4.4
|
23.0
|
1.0
|
N
|
C:ASN301
|
4.4
|
16.2
|
1.0
|
N
|
C:GLU127
|
4.5
|
26.3
|
1.0
|
CG
|
C:GLU299
|
4.5
|
5.2
|
1.0
|
CZ
|
C:ARG129
|
4.6
|
18.1
|
1.0
|
CA
|
C:MET300
|
4.6
|
10.1
|
1.0
|
OE2
|
C:GLU299
|
4.6
|
17.0
|
1.0
|
CD
|
C:PRO302
|
4.7
|
16.6
|
1.0
|
NH2
|
C:ARG129
|
4.7
|
19.1
|
1.0
|
O3B
|
C:ADP5023
|
4.7
|
15.4
|
1.0
|
CG
|
C:GLU127
|
4.8
|
19.8
|
1.0
|
CB
|
C:ASN301
|
4.9
|
11.8
|
1.0
|
CB
|
C:ALA126
|
4.9
|
15.9
|
1.0
|
O
|
C:HOH1251
|
5.0
|
16.0
|
1.0
|
|
Reference:
J.B.Thoden,
X.Huang,
F.M.Raushel,
H.M.Holden.
The Small Subunit of Carbamoyl Phosphate Synthetase: Snapshots Along the Reaction Pathway. Biochemistry V. 38 16158 1999.
ISSN: ISSN 0006-2960
PubMed: 10587438
DOI: 10.1021/BI991741J
Page generated: Mon Aug 12 04:16:53 2024
|