Potassium in PDB 1c35: Solution Structure of A Quadruplex Forming Dna and Its Intermidiate

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Potassium atom in the Solution Structure of A Quadruplex Forming Dna and Its Intermidiate (pdb code 1c35). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 20 binding sites of Potassium where determined in the Solution Structure of A Quadruplex Forming Dna and Its Intermidiate, PDB code: 1c35:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 20 in the Solution Structure of A Quadruplex Forming Dna and Its Intermidiate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Solution Structure of A Quadruplex Forming Dna and Its Intermidiate within 5.0Å range: probe atom residue distance (Å) B Occ A:K101 b:0.0 occ:1.00 K A:K104 0.3 0.0 1.0 K A:K110 0.3 0.0 1.0 K A:K108 0.4 0.0 1.0 K A:K103 0.5 0.0 1.0 K A:K102 0.5 0.0 1.0 K A:K106 0.6 0.0 1.0 K A:K107 0.6 0.0 1.0 K A:K109 0.6 0.0 1.0 K A:K105 0.7 0.0 1.0 H1 A:DG11 1.6 0.2 1.0 O6 A:DG5 1.6 0.2 1.0 O4 A:DT13 1.9 0.2 1.0 H3 A:DT13 2.1 0.3 1.0 H3 A:DT4 2.1 0.3 1.0 N1 A:DG11 2.2 0.2 1.0 O4 A:DT4 2.3 0.3 1.0 C4 A:DT13 2.4 0.2 1.0 H21 A:DG11 2.4 0.3 1.0 N3 A:DT13 2.5 0.2 1.0 N3 A:DT4 2.6 0.3 1.0 C4 A:DT4 2.7 0.2 1.0 O6 A:DG2 2.7 0.2 1.0 C6 A:DG5 2.8 0.2 1.0 C2 A:DG11 2.9 0.2 1.0 N2 A:DG11 3.0 0.2 1.0 C6 A:DG11 3.0 0.2 1.0 O6 A:DG11 3.2 0.2 1.0 C6 A:DG2 3.6 0.1 1.0 C5 A:DT13 3.7 0.2 1.0 N1 A:DG5 3.7 0.2 1.0 H1 A:DG5 3.7 0.2 1.0 C2 A:DT13 3.7 0.2 1.0 C2 A:DT4 3.8 0.2 1.0 C5 A:DG5 3.8 0.2 1.0 H22 A:DG11 3.9 0.2 1.0 H1 A:DG2 4.0 0.2 1.0 C5 A:DT4 4.0 0.2 1.0 N3 A:DG11 4.1 0.2 1.0 H71 A:DT13 4.2 0.3 1.0 C5 A:DG11 4.2 0.2 1.0 N1 A:DG2 4.2 0.2 1.0 N7 A:DG5 4.2 0.2 1.0 O2 A:DT4 4.3 0.3 1.0 O2 A:DT13 4.4 0.3 1.0 C7 A:DT13 4.5 0.2 1.0 C4 A:DG11 4.5 0.2 1.0 C5 A:DG2 4.5 0.1 1.0 H73 A:DT4 4.5 0.3 1.0 C6 A:DT13 4.6 0.2 1.0 H1 A:DG6 4.6 0.1 1.0 N1 A:DT13 4.6 0.2 1.0 O6 A:DG6 4.6 0.2 1.0 O6 A:DG10 4.8 0.2 1.0 N1 A:DT4 4.8 0.2 1.0 N1 A:DG6 4.8 0.1 1.0 O6 A:DG14 4.8 0.2 1.0 C7 A:DT4 4.8 0.3 1.0 C6 A:DT4 4.9 0.2 1.0 N7 A:DG2 4.9 0.2 1.0 C6 A:DG6 4.9 0.2 1.0 H73 A:DT13 4.9 0.3 1.0 K A:K204 4.9 0.0 1.0 K A:K210 4.9 0.0 1.0

Potassium binding site 2 out of 20 in the Solution Structure of A Quadruplex Forming Dna and Its Intermidiate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Solution Structure of A Quadruplex Forming Dna and Its Intermidiate within 5.0Å range: probe atom residue distance (Å) B Occ A:K102 b:0.0 occ:1.00 K A:K106 0.0 0.0 1.0 K A:K107 0.1 0.0 1.0 K A:K109 0.2 0.0 1.0 K A:K108 0.3 0.0 1.0 K A:K105 0.5 0.0 1.0 K A:K101 0.5 0.0 1.0 K A:K104 0.7 0.0 1.0 K A:K110 0.8 0.0 1.0 K A:K103 1.0 0.0 1.0 O6 A:DG5 1.7 0.2 1.0 H1 A:DG11 1.8 0.2 1.0 O4 A:DT4 1.8 0.3 1.0 H3 A:DT13 2.0 0.3 1.0 H3 A:DT4 2.3 0.3 1.0 O4 A:DT13 2.3 0.2 1.0 C4 A:DT4 2.4 0.2 1.0 O6 A:DG2 2.4 0.2 1.0 N1 A:DG11 2.5 0.2 1.0 N3 A:DT13 2.6 0.2 1.0 N3 A:DT4 2.6 0.3 1.0 C4 A:DT13 2.7 0.2 1.0 H21 A:DG11 2.9 0.3 1.0 C6 A:DG5 2.9 0.2 1.0 C6 A:DG2 3.1 0.1 1.0 O6 A:DG11 3.2 0.2 1.0 C6 A:DG11 3.2 0.2 1.0 C2 A:DG11 3.4 0.2 1.0 N2 A:DG11 3.5 0.2 1.0 H1 A:DG5 3.5 0.2 1.0 N1 A:DG5 3.6 0.2 1.0 H1 A:DG2 3.6 0.2 1.0 C5 A:DT4 3.7 0.2 1.0 N1 A:DG2 3.7 0.2 1.0 C2 A:DT13 3.8 0.2 1.0 C2 A:DT4 3.8 0.2 1.0 H73 A:DT4 4.0 0.3 1.0 C5 A:DG5 4.0 0.2 1.0 C5 A:DT13 4.1 0.2 1.0 C5 A:DG2 4.1 0.1 1.0 O2 A:DT13 4.2 0.3 1.0 C7 A:DT4 4.4 0.3 1.0 H22 A:DG11 4.4 0.2 1.0 C5 A:DG11 4.4 0.2 1.0 O2 A:DT4 4.5 0.3 1.0 N7 A:DG2 4.5 0.2 1.0 N7 A:DG5 4.5 0.2 1.0 N3 A:DG11 4.6 0.2 1.0 O6 A:DG14 4.6 0.2 1.0 O6 A:DG6 4.6 0.2 1.0 C6 A:DT4 4.6 0.2 1.0 H71 A:DT13 4.7 0.3 1.0 N1 A:DT4 4.7 0.2 1.0 K A:K204 4.7 0.0 1.0 K A:K210 4.7 0.0 1.0 H1 A:DG6 4.8 0.1 1.0 N1 A:DT13 4.8 0.2 1.0 H72 A:DT4 4.8 0.3 1.0 K A:K206 4.8 0.0 1.0 K A:K202 4.8 0.0 1.0 C6 A:DT13 4.9 0.2 1.0 C4 A:DG11 4.9 0.2 1.0 C2 A:DG2 4.9 0.2 1.0 C6 A:DG6 4.9 0.2 1.0 C2 A:DG5 4.9 0.2 1.0 O6 A:DG10 5.0 0.2 1.0 C7 A:DT13 5.0 0.2 1.0

Potassium binding site 3 out of 20 in the Solution Structure of A Quadruplex Forming Dna and Its Intermidiate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Solution Structure of A Quadruplex Forming Dna and Its Intermidiate within 5.0Å range: probe atom residue distance (Å) B Occ A:K103 b:0.0 occ:1.00 K A:K110 0.2 0.0 1.0 K A:K104 0.3 0.0 1.0 K A:K101 0.5 0.0 1.0 K A:K108 0.8 0.0 1.0 K A:K105 0.9 0.0 1.0 K A:K102 1.0 0.0 1.0 K A:K106 1.0 0.0 1.0 K A:K107 1.0 0.0 1.0 K A:K109 1.0 0.0 1.0 O4 A:DT13 1.5 0.2 1.0 H1 A:DG11 1.8 0.2 1.0 O6 A:DG5 1.9 0.2 1.0 H3 A:DT4 2.0 0.3 1.0 C4 A:DT13 2.0 0.2 1.0 H3 A:DT13 2.1 0.3 1.0 N1 A:DG11 2.2 0.2 1.0 N3 A:DT13 2.3 0.2 1.0 H21 A:DG11 2.3 0.3 1.0 O4 A:DT4 2.5 0.3 1.0 N3 A:DT4 2.6 0.3 1.0 C2 A:DG11 2.7 0.2 1.0 N2 A:DG11 2.8 0.2 1.0 C4 A:DT4 2.9 0.2 1.0 C6 A:DG5 3.0 0.2 1.0 C6 A:DG11 3.1 0.2 1.0 O6 A:DG2 3.1 0.2 1.0 C5 A:DT13 3.3 0.2 1.0 O6 A:DG11 3.4 0.2 1.0 C2 A:DT13 3.6 0.2 1.0 H71 A:DT13 3.7 0.3 1.0 H22 A:DG11 3.7 0.2 1.0 C2 A:DT4 3.8 0.2 1.0 N3 A:DG11 3.8 0.2 1.0 C5 A:DG5 3.9 0.2 1.0 C6 A:DG2 4.0 0.1 1.0 C7 A:DT13 4.0 0.2 1.0 N1 A:DG5 4.0 0.2 1.0 C5 A:DG11 4.1 0.2 1.0 N7 A:DG5 4.1 0.2 1.0 H1 A:DG5 4.1 0.2 1.0 O2 A:DT4 4.2 0.3 1.0 C6 A:DT13 4.2 0.2 1.0 C5 A:DT4 4.2 0.2 1.0 C4 A:DG11 4.3 0.2 1.0 O2 A:DT13 4.3 0.3 1.0 N1 A:DT13 4.4 0.2 1.0 H1 A:DG2 4.4 0.2 1.0 H73 A:DT13 4.5 0.3 1.0 N1 A:DG2 4.6 0.2 1.0 H1 A:DG6 4.7 0.1 1.0 H73 A:DT4 4.8 0.3 1.0 N1 A:DT4 4.9 0.2 1.0 O6 A:DG10 4.9 0.2 1.0 H72 A:DT13 4.9 0.3 1.0 H3 A:DT7 5.0 0.2 1.0 N1 A:DG6 5.0 0.1 1.0 C5 A:DG2 5.0 0.1 1.0 O6 A:DG6 5.0 0.2 1.0

Potassium binding site 4 out of 20 in the Solution Structure of A Quadruplex Forming Dna and Its Intermidiate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Solution Structure of A Quadruplex Forming Dna and Its Intermidiate within 5.0Å range: probe atom residue distance (Å) B Occ A:K104 b:0.0 occ:1.00 K A:K110 0.1 0.0 1.0 K A:K101 0.3 0.0 1.0 K A:K103 0.3 0.0 1.0 K A:K108 0.5 0.0 1.0 K A:K105 0.7 0.0 1.0 K A:K102 0.7 0.0 1.0 K A:K106 0.7 0.0 1.0 K A:K107 0.7 0.0 1.0 K A:K109 0.8 0.0 1.0 O4 A:DT13 1.7 0.2 1.0 O6 A:DG5 1.8 0.2 1.0 H1 A:DG11 1.8 0.2 1.0 H3 A:DT4 1.9 0.3 1.0 H3 A:DT13 2.0 0.3 1.0 C4 A:DT13 2.2 0.2 1.0 O4 A:DT4 2.2 0.3 1.0 N1 A:DG11 2.3 0.2 1.0 N3 A:DT13 2.3 0.2 1.0 H21 A:DG11 2.5 0.3 1.0 N3 A:DT4 2.5 0.3 1.0 C4 A:DT4 2.6 0.2 1.0 C6 A:DG5 2.9 0.2 1.0 O6 A:DG2 2.9 0.2 1.0 C2 A:DG11 2.9 0.2 1.0 N2 A:DG11 3.0 0.2 1.0 C6 A:DG11 3.1 0.2 1.0 O6 A:DG11 3.3 0.2 1.0 C5 A:DT13 3.5 0.2 1.0 C2 A:DT13 3.6 0.2 1.0 C2 A:DT4 3.7 0.2 1.0 C6 A:DG2 3.8 0.1 1.0 C5 A:DG5 3.9 0.2 1.0 N1 A:DG5 3.9 0.2 1.0 H1 A:DG5 3.9 0.2 1.0 H22 A:DG11 3.9 0.2 1.0 H71 A:DT13 4.0 0.3 1.0 C5 A:DT4 4.0 0.2 1.0 N3 A:DG11 4.1 0.2 1.0 N7 A:DG5 4.2 0.2 1.0 H1 A:DG2 4.2 0.2 1.0 O2 A:DT4 4.2 0.3 1.0 C5 A:DG11 4.2 0.2 1.0 O2 A:DT13 4.3 0.3 1.0 C7 A:DT13 4.3 0.2 1.0 N1 A:DG2 4.4 0.2 1.0 C6 A:DT13 4.4 0.2 1.0 N1 A:DT13 4.5 0.2 1.0 C4 A:DG11 4.5 0.2 1.0 H73 A:DT4 4.6 0.3 1.0 C5 A:DG2 4.7 0.1 1.0 N1 A:DT4 4.7 0.2 1.0 H73 A:DT13 4.8 0.3 1.0 H1 A:DG6 4.8 0.1 1.0 C6 A:DT4 4.8 0.2 1.0 O6 A:DG6 4.9 0.2 1.0 C7 A:DT4 4.9 0.3 1.0 O6 A:DG10 4.9 0.2 1.0 O6 A:DG14 5.0 0.2 1.0

Potassium binding site 5 out of 20 in the Solution Structure of A Quadruplex Forming Dna and Its Intermidiate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Solution Structure of A Quadruplex Forming Dna and Its Intermidiate within 5.0Å range: probe atom residue distance (Å) B Occ A:K105 b:0.0 occ:1.00 K A:K102 0.5 0.0 1.0 K A:K106 0.5 0.0 1.0 K A:K107 0.5 0.0 1.0 K A:K108 0.6 0.0 1.0 K A:K104 0.7 0.0 1.0 K A:K109 0.7 0.0 1.0 K A:K101 0.7 0.0 1.0 K A:K110 0.7 0.0 1.0 K A:K103 0.9 0.0 1.0 O4 A:DT4 1.6 0.3 1.0 H3 A:DT13 1.6 0.3 1.0 H3 A:DT4 1.9 0.3 1.0 O6 A:DG5 2.0 0.2 1.0 O4 A:DT13 2.1 0.2 1.0 C4 A:DT4 2.1 0.2 1.0 H1 A:DG11 2.2 0.2 1.0 N3 A:DT13 2.3 0.2 1.0 N3 A:DT4 2.3 0.3 1.0 C4 A:DT13 2.4 0.2 1.0 O6 A:DG2 2.8 0.2 1.0 N1 A:DG11 2.8 0.2 1.0 H21 A:DG11 3.0 0.3 1.0 C6 A:DG5 3.1 0.2 1.0 O6 A:DG11 3.5 0.2 1.0 C6 A:DG2 3.5 0.1 1.0 C6 A:DG11 3.5 0.2 1.0 C5 A:DT4 3.5 0.2 1.0 C2 A:DT13 3.5 0.2 1.0 C2 A:DG11 3.6 0.2 1.0 C2 A:DT4 3.6 0.2 1.0 N2 A:DG11 3.7 0.2 1.0 H1 A:DG5 3.8 0.2 1.0 C5 A:DT13 3.8 0.2 1.0 N1 A:DG5 3.9 0.2 1.0 H1 A:DG2 3.9 0.2 1.0 H73 A:DT4 3.9 0.3 1.0 N1 A:DG2 4.0 0.2 1.0 O2 A:DT13 4.0 0.3 1.0 C5 A:DG5 4.2 0.2 1.0 O2 A:DT4 4.3 0.3 1.0 C7 A:DT4 4.3 0.3 1.0 C5 A:DG2 4.3 0.1 1.0 C6 A:DT4 4.4 0.2 1.0 H71 A:DT13 4.5 0.3 1.0 N1 A:DT4 4.5 0.2 1.0 N1 A:DT13 4.5 0.2 1.0 H22 A:DG11 4.6 0.2 1.0 N7 A:DG5 4.6 0.2 1.0 C6 A:DT13 4.6 0.2 1.0 C5 A:DG11 4.6 0.2 1.0 N3 A:DG11 4.7 0.2 1.0 N7 A:DG2 4.7 0.2 1.0 C7 A:DT13 4.8 0.2 1.0 O6 A:DG14 4.8 0.2 1.0 H72 A:DT4 4.8 0.3 1.0

Potassium binding site 6 out of 20 in the Solution Structure of A Quadruplex Forming Dna and Its Intermidiate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Solution Structure of A Quadruplex Forming Dna and Its Intermidiate within 5.0Å range: probe atom residue distance (Å) B Occ A:K106 b:0.0 occ:1.00 K A:K102 0.0 0.0 1.0 K A:K107 0.1 0.0 1.0 K A:K109 0.2 0.0 1.0 K A:K108 0.3 0.0 1.0 K A:K105 0.5 0.0 1.0 K A:K101 0.6 0.0 1.0 K A:K104 0.7 0.0 1.0 K A:K110 0.8 0.0 1.0 K A:K103 1.0 0.0 1.0 O6 A:DG5 1.7 0.2 1.0 H1 A:DG11 1.8 0.2 1.0 O4 A:DT4 1.8 0.3 1.0 H3 A:DT13 2.0 0.3 1.0 H3 A:DT4 2.3 0.3 1.0 O4 A:DT13 2.3 0.2 1.0 C4 A:DT4 2.4 0.2 1.0 O6 A:DG2 2.4 0.2 1.0 N1 A:DG11 2.5 0.2 1.0 N3 A:DT13 2.6 0.2 1.0 N3 A:DT4 2.6 0.3 1.0 C4 A:DT13 2.7 0.2 1.0 H21 A:DG11 2.9 0.3 1.0 C6 A:DG5 2.9 0.2 1.0 C6 A:DG2 3.1 0.1 1.0 O6 A:DG11 3.2 0.2 1.0 C6 A:DG11 3.2 0.2 1.0 C2 A:DG11 3.4 0.2 1.0 N2 A:DG11 3.5 0.2 1.0 H1 A:DG5 3.5 0.2 1.0 N1 A:DG5 3.6 0.2 1.0 H1 A:DG2 3.6 0.2 1.0 C5 A:DT4 3.6 0.2 1.0 N1 A:DG2 3.7 0.2 1.0 C2 A:DT13 3.8 0.2 1.0 C2 A:DT4 3.8 0.2 1.0 H73 A:DT4 4.0 0.3 1.0 C5 A:DG5 4.0 0.2 1.0 C5 A:DG2 4.0 0.1 1.0 C5 A:DT13 4.1 0.2 1.0 O2 A:DT13 4.2 0.3 1.0 C7 A:DT4 4.4 0.3 1.0 H22 A:DG11 4.4 0.2 1.0 C5 A:DG11 4.5 0.2 1.0 N7 A:DG2 4.5 0.2 1.0 O2 A:DT4 4.5 0.3 1.0 N7 A:DG5 4.5 0.2 1.0 N3 A:DG11 4.6 0.2 1.0 C6 A:DT4 4.6 0.2 1.0 O6 A:DG14 4.6 0.2 1.0 O6 A:DG6 4.6 0.2 1.0 N1 A:DT4 4.7 0.2 1.0 H71 A:DT13 4.7 0.3 1.0 K A:K204 4.7 0.0 1.0 K A:K210 4.7 0.0 1.0 H1 A:DG6 4.8 0.1 1.0 N1 A:DT13 4.8 0.2 1.0 H72 A:DT4 4.8 0.3 1.0 K A:K206 4.8 0.0 1.0 K A:K202 4.8 0.0 1.0 C6 A:DT13 4.9 0.2 1.0 C2 A:DG2 4.9 0.2 1.0 C4 A:DG11 4.9 0.2 1.0 C6 A:DG6 4.9 0.2 1.0 C2 A:DG5 4.9 0.2 1.0 O6 A:DG10 5.0 0.2 1.0 C7 A:DT13 5.0 0.2 1.0

Potassium binding site 7 out of 20 in the Solution Structure of A Quadruplex Forming Dna and Its Intermidiate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Solution Structure of A Quadruplex Forming Dna and Its Intermidiate within 5.0Å range: probe atom residue distance (Å) B Occ A:K107 b:0.0 occ:1.00 K A:K102 0.1 0.0 1.0 K A:K106 0.1 0.0 1.0 K A:K109 0.2 0.0 1.0 K A:K108 0.3 0.0 1.0 K A:K105 0.5 0.0 1.0 K A:K101 0.6 0.0 1.0 K A:K104 0.7 0.0 1.0 K A:K110 0.8 0.0 1.0 K A:K103 1.0 0.0 1.0 H1 A:DG11 1.8 0.2 1.0 O6 A:DG5 1.8 0.2 1.0 O4 A:DT4 1.9 0.3 1.0 H3 A:DT13 2.0 0.3 1.0 H3 A:DT4 2.3 0.3 1.0 O6 A:DG2 2.3 0.2 1.0 O4 A:DT13 2.4 0.2 1.0 C4 A:DT4 2.4 0.2 1.0 N1 A:DG11 2.5 0.2 1.0 N3 A:DT13 2.6 0.2 1.0 N3 A:DT4 2.7 0.3 1.0 C4 A:DT13 2.7 0.2 1.0 H21 A:DG11 2.9 0.3 1.0 C6 A:DG5 2.9 0.2 1.0 C6 A:DG2 3.1 0.1 1.0 O6 A:DG11 3.1 0.2 1.0 C6 A:DG11 3.2 0.2 1.0 C2 A:DG11 3.4 0.2 1.0 N2 A:DG11 3.5 0.2 1.0 H1 A:DG5 3.5 0.2 1.0 H1 A:DG2 3.6 0.2 1.0 N1 A:DG5 3.7 0.2 1.0 N1 A:DG2 3.7 0.2 1.0 C5 A:DT4 3.7 0.2 1.0 C2 A:DT13 3.7 0.2 1.0 C2 A:DT4 3.9 0.2 1.0 H73 A:DT4 4.0 0.3 1.0 C5 A:DT13 4.0 0.2 1.0 C5 A:DG2 4.0 0.1 1.0 C5 A:DG5 4.1 0.2 1.0 O2 A:DT13 4.2 0.3 1.0 C5 A:DG11 4.4 0.2 1.0 C7 A:DT4 4.4 0.3 1.0 H22 A:DG11 4.4 0.2 1.0 O6 A:DG14 4.5 0.2 1.0 N7 A:DG2 4.5 0.2 1.0 N3 A:DG11 4.5 0.2 1.0 O6 A:DG6 4.6 0.2 1.0 O2 A:DT4 4.6 0.3 1.0 N7 A:DG5 4.6 0.2 1.0 C6 A:DT4 4.7 0.2 1.0 H71 A:DT13 4.7 0.3 1.0 K A:K204 4.7 0.0 1.0 K A:K210 4.7 0.0 1.0 H1 A:DG6 4.7 0.1 1.0 N1 A:DT13 4.7 0.2 1.0 N1 A:DT4 4.8 0.2 1.0 K A:K206 4.8 0.0 1.0 K A:K202 4.8 0.0 1.0 C6 A:DT13 4.8 0.2 1.0 C4 A:DG11 4.9 0.2 1.0 H72 A:DT4 4.9 0.3 1.0 C2 A:DG2 4.9 0.2 1.0 O6 A:DG10 4.9 0.2 1.0 C6 A:DG6 4.9 0.2 1.0 H1 A:DG14 4.9 0.2 1.0 C7 A:DT13 5.0 0.2 1.0 C2 A:DG5 5.0 0.2 1.0 N1 A:DG6 5.0 0.1 1.0

Potassium binding site 8 out of 20 in the Solution Structure of A Quadruplex Forming Dna and Its Intermidiate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Solution Structure of A Quadruplex Forming Dna and Its Intermidiate within 5.0Å range: probe atom residue distance (Å) B Occ A:K108 b:0.0 occ:1.00 K A:K107 0.3 0.0 1.0 K A:K102 0.3 0.0 1.0 K A:K106 0.3 0.0 1.0 K A:K109 0.4 0.0 1.0 K A:K101 0.4 0.0 1.0 K A:K104 0.5 0.0 1.0 K A:K105 0.6 0.0 1.0 K A:K110 0.6 0.0 1.0 K A:K103 0.8 0.0 1.0 H1 A:DG11 1.7 0.2 1.0 O6 A:DG5 1.8 0.2 1.0 H3 A:DT13 1.9 0.3 1.0 O4 A:DT4 2.0 0.3 1.0 O4 A:DT13 2.2 0.2 1.0 H3 A:DT4 2.3 0.3 1.0 N1 A:DG11 2.3 0.2 1.0 N3 A:DT13 2.4 0.2 1.0 C4 A:DT13 2.5 0.2 1.0 O6 A:DG2 2.5 0.2 1.0 C4 A:DT4 2.6 0.2 1.0 N3 A:DT4 2.7 0.3 1.0 H21 A:DG11 2.8 0.3 1.0 C6 A:DG5 3.0 0.2 1.0 C6 A:DG11 3.0 0.2 1.0 O6 A:DG11 3.0 0.2 1.0 C2 A:DG11 3.2 0.2 1.0 N2 A:DG11 3.3 0.2 1.0 C6 A:DG2 3.3 0.1 1.0 C2 A:DT13 3.6 0.2 1.0 H1 A:DG2 3.7 0.2 1.0 H1 A:DG5 3.7 0.2 1.0 N1 A:DG5 3.8 0.2 1.0 C5 A:DT13 3.8 0.2 1.0 N1 A:DG2 3.9 0.2 1.0 C5 A:DT4 3.9 0.2 1.0 C2 A:DT4 4.0 0.2 1.0 C5 A:DG5 4.1 0.2 1.0 O2 A:DT13 4.1 0.3 1.0 C5 A:DG11 4.2 0.2 1.0 H73 A:DT4 4.3 0.3 1.0 H22 A:DG11 4.3 0.2 1.0 C5 A:DG2 4.3 0.1 1.0 N3 A:DG11 4.3 0.2 1.0 H71 A:DT13 4.4 0.3 1.0 N7 A:DG5 4.5 0.2 1.0 O6 A:DG14 4.5 0.2 1.0 O2 A:DT4 4.6 0.3 1.0 N1 A:DT13 4.6 0.2 1.0 C6 A:DT13 4.6 0.2 1.0 C4 A:DG11 4.6 0.2 1.0 O6 A:DG6 4.6 0.2 1.0 C7 A:DT4 4.6 0.3 1.0 H1 A:DG6 4.7 0.1 1.0 C7 A:DT13 4.7 0.2 1.0 N7 A:DG2 4.7 0.2 1.0 K A:K204 4.8 0.0 1.0 K A:K210 4.8 0.0 1.0 O6 A:DG10 4.8 0.2 1.0 C6 A:DT4 4.8 0.2 1.0 K A:K206 4.8 0.0 1.0 K A:K202 4.8 0.0 1.0 H1 A:DG14 4.9 0.2 1.0 N1 A:DT4 4.9 0.2 1.0 C6 A:DG6 5.0 0.2 1.0 N1 A:DG6 5.0 0.1 1.0

Potassium binding site 9 out of 20 in the Solution Structure of A Quadruplex Forming Dna and Its Intermidiate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Solution Structure of A Quadruplex Forming Dna and Its Intermidiate within 5.0Å range: probe atom residue distance (Å) B Occ A:K109 b:0.0 occ:1.00 K A:K107 0.2 0.0 1.0 K A:K106 0.2 0.0 1.0 K A:K102 0.2 0.0 1.0 K A:K108 0.4 0.0 1.0 K A:K101 0.6 0.0 1.0 K A:K105 0.7 0.0 1.0 K A:K104 0.8 0.0 1.0 K A:K110 0.9 0.0 1.0 K A:K103 1.0 0.0 1.0 H1 A:DG11 1.6 0.2 1.0 O6 A:DG5 1.6 0.2 1.0 O4 A:DT4 2.0 0.3 1.0 H3 A:DT13 2.2 0.3 1.0 O6 A:DG2 2.2 0.2 1.0 N1 A:DG11 2.4 0.2 1.0 H3 A:DT4 2.4 0.3 1.0 O4 A:DT13 2.5 0.2 1.0 C4 A:DT4 2.5 0.2 1.0 N3 A:DT13 2.7 0.2 1.0 N3 A:DT4 2.7 0.3 1.0 H21 A:DG11 2.8 0.3 1.0 C6 A:DG5 2.8 0.2 1.0 C4 A:DT13 2.8 0.2 1.0 C6 A:DG2 3.0 0.1 1.0 O6 A:DG11 3.1 0.2 1.0 C6 A:DG11 3.1 0.2 1.0 C2 A:DG11 3.3 0.2 1.0 N2 A:DG11 3.4 0.2 1.0 H1 A:DG5 3.4 0.2 1.0 N1 A:DG5 3.5 0.2 1.0 H1 A:DG2 3.5 0.2 1.0 N1 A:DG2 3.6 0.2 1.0 C5 A:DT4 3.8 0.2 1.0 C2 A:DT13 3.9 0.2 1.0 C2 A:DT4 3.9 0.2 1.0 C5 A:DG5 4.0 0.2 1.0 C5 A:DG2 4.0 0.1 1.0 H73 A:DT4 4.1 0.3 1.0 C5 A:DT13 4.2 0.2 1.0 H22 A:DG11 4.3 0.2 1.0 O2 A:DT13 4.4 0.3 1.0 C5 A:DG11 4.4 0.2 1.0 O6 A:DG6 4.4 0.2 1.0 N7 A:DG2 4.4 0.2 1.0 C7 A:DT4 4.5 0.3 1.0 N7 A:DG5 4.5 0.2 1.0 N3 A:DG11 4.5 0.2 1.0 O6 A:DG14 4.5 0.2 1.0 K A:K204 4.5 0.0 1.0 K A:K210 4.6 0.0 1.0 H1 A:DG6 4.6 0.1 1.0 O2 A:DT4 4.6 0.3 1.0 K A:K206 4.6 0.0 1.0 K A:K202 4.7 0.0 1.0 C6 A:DT4 4.7 0.2 1.0 C6 A:DG6 4.7 0.2 1.0 H71 A:DT13 4.7 0.3 1.0 O6 A:DG10 4.8 0.2 1.0 N1 A:DT4 4.8 0.2 1.0 N1 A:DG6 4.8 0.1 1.0 C4 A:DG11 4.8 0.2 1.0 C2 A:DG5 4.8 0.2 1.0 C2 A:DG2 4.9 0.2 1.0 H72 A:DT4 4.9 0.3 1.0 N1 A:DT13 4.9 0.2 1.0 K A:K205 4.9 0.0 1.0 K A:K201 4.9 0.0 1.0 C6 A:DT13 5.0 0.2 1.0 H1 A:DG14 5.0 0.2 1.0 H1 A:DG1 5.0 0.2 1.0

Potassium binding site 10 out of 20 in the Solution Structure of A Quadruplex Forming Dna and Its Intermidiate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Solution Structure of A Quadruplex Forming Dna and Its Intermidiate within 5.0Å range: probe atom residue distance (Å) B Occ A:K110 b:0.0 occ:1.00 K A:K104 0.1 0.0 1.0 K A:K103 0.2 0.0 1.0 K A:K101 0.3 0.0 1.0 K A:K108 0.6 0.0 1.0 K A:K105 0.7 0.0 1.0 K A:K102 0.8 0.0 1.0 K A:K106 0.8 0.0 1.0 K A:K107 0.8 0.0 1.0 K A:K109 0.9 0.0 1.0 O4 A:DT13 1.6 0.2 1.0 O6 A:DG5 1.8 0.2 1.0 H1 A:DG11 1.8 0.2 1.0 H3 A:DT4 1.9 0.3 1.0 H3 A:DT13 2.0 0.3 1.0 C4 A:DT13 2.1 0.2 1.0 O4 A:DT4 2.3 0.3 1.0 N1 A:DG11 2.3 0.2 1.0 N3 A:DT13 2.3 0.2 1.0 H21 A:DG11 2.4 0.3 1.0 N3 A:DT4 2.5 0.3 1.0 C4 A:DT4 2.7 0.2 1.0 C2 A:DG11 2.9 0.2 1.0 C6 A:DG5 3.0 0.2 1.0 N2 A:DG11 3.0 0.2 1.0 O6 A:DG2 3.0 0.2 1.0 C6 A:DG11 3.1 0.2 1.0 O6 A:DG11 3.4 0.2 1.0 C5 A:DT13 3.4 0.2 1.0 C2 A:DT13 3.6 0.2 1.0 C2 A:DT4 3.7 0.2 1.0 C6 A:DG2 3.9 0.1 1.0 C5 A:DG5 3.9 0.2 1.0 H71 A:DT13 3.9 0.3 1.0 H22 A:DG11 3.9 0.2 1.0 N1 A:DG5 3.9 0.2 1.0 H1 A:DG5 4.0 0.2 1.0 N3 A:DG11 4.0 0.2 1.0 C5 A:DT4 4.1 0.2 1.0 N7 A:DG5 4.1 0.2 1.0 O2 A:DT4 4.2 0.3 1.0 C5 A:DG11 4.2 0.2 1.0 C7 A:DT13 4.2 0.2 1.0 H1 A:DG2 4.3 0.2 1.0 O2 A:DT13 4.3 0.3 1.0 C6 A:DT13 4.3 0.2 1.0 N1 A:DG2 4.4 0.2 1.0 N1 A:DT13 4.5 0.2 1.0 C4 A:DG11 4.5 0.2 1.0 H73 A:DT4 4.6 0.3 1.0 H73 A:DT13 4.7 0.3 1.0 N1 A:DT4 4.8 0.2 1.0 H1 A:DG6 4.8 0.1 1.0 C5 A:DG2 4.8 0.1 1.0 C6 A:DT4 4.9 0.2 1.0 O6 A:DG6 4.9 0.2 1.0 C7 A:DT4 4.9 0.3 1.0 O6 A:DG10 5.0 0.2 1.0

V.M.Marathias, P.H.Bolton. Structures of the Potassium-Saturated, 2:1, and Intermediate, 1:1, Forms of A Quadruplex Dna. Nucleic Acids Res. V. 28 1969 2000.
ISSN: ISSN 0305-1048
PubMed: 10756199
DOI: 10.1093/NAR/28.9.1969