Atomistry » Potassium » PDB 1a3w-1d7u » 1bxr
Atomistry »
  Potassium »
    PDB 1a3w-1d7u »
      1bxr »

Potassium in PDB 1bxr: Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp

Enzymatic activity of Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp

All present enzymatic activity of Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp:
6.3.5.5;

Protein crystallography data

The structure of Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp, PDB code: 1bxr was solved by J.B.Thoden, G.Wesenberg, F.M.Raushel, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 151.900, 164.500, 332.600, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / n/a

Other elements in 1bxr:

The structure of Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp also contains other interesting chemical elements:

Manganese (Mn) 13 atoms
Chlorine (Cl) 14 atoms

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 19;

Binding sites:

The binding sites of Potassium atom in the Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp (pdb code 1bxr). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 19 binding sites of Potassium where determined in the Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp, PDB code: 1bxr:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 19 in 1bxr

Go back to Potassium Binding Sites List in 1bxr
Potassium binding site 1 out of 19 in the Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1075

b:27.2
occ:1.00
 O A:ILE242 2.6 28.9 1.0
OD1 A:ASN236 2.6 23.7 1.0
OG A:SER247 2.8 26.6 1.0
OE1 A:GLU215 2.8 23.4 1.0
O A:ASP238 2.9 20.9 1.0
O A:ALA239 3.1 41.0 1.0
CG A:ASN236 3.6 22.6 1.0
C A:ASP238 3.7 29.0 1.0
C A:ALA239 3.7 47.2 1.0
CB A:SER247 3.7 17.7 1.0
CD A:GLU215 3.8 42.2 1.0
C A:ILE242 3.8 33.5 1.0
CB A:ASN236 3.8 8.4 1.0
CB A:GLU215 4.2 27.0 1.0
O2' A:ANP1083 4.3 32.0 1.0
CG A:GLU215 4.3 26.1 1.0
O A:HIS243 4.3 35.4 1.0
N A:ALA239 4.3 25.8 1.0
CB A:ILE242 4.4 21.1 1.0
N A:MET240 4.4 23.7 1.0
N A:THR244 4.4 18.3 1.0
CB A:ASP238 4.4 18.0 1.0
C A:HIS243 4.4 22.6 1.0
CA A:ALA239 4.4 28.5 1.0
CA A:THR244 4.4 18.2 1.0
CA A:ILE242 4.5 25.3 1.0
N A:ILE242 4.5 32.3 1.0
CG2 A:THR244 4.5 39.3 1.0
OE2 A:GLU215 4.5 42.1 1.0
CA A:ASP238 4.6 27.8 1.0
CA A:MET240 4.6 22.9 1.0
CG2 A:ILE242 4.8 14.9 1.0
ND2 A:ASN236 4.8 19.7 1.0
N A:HIS243 4.8 22.1 1.0

Potassium binding site 2 out of 19 in 1bxr

Go back to Potassium Binding Sites List in 1bxr
Potassium binding site 2 out of 19 in the Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1076

b:29.0
occ:1.00
 O A:MET300 2.2 30.1 1.0
O A:HOH1199 2.5 44.8 1.0
O A:HOH1200 2.6 59.1 1.0
OE2 A:GLU127 3.2 48.1 1.0
O A:HOH1393 3.3 38.4 1.0
C A:MET300 3.3 26.5 1.0
OE1 A:GLU299 3.4 44.1 1.0
O A:ALA126 3.5 42.4 1.0
OD1 A:ASN301 3.6 35.6 1.0
CD A:GLU127 3.6 43.8 1.0
MN A:MN1074 3.8 24.3 1.0
CD A:GLU299 3.9 37.0 1.0
C A:ALA126 4.0 38.7 1.0
OE1 A:GLU127 4.0 0.0 1.0
N A:MET300 4.0 52.9 1.0
N A:ASN301 4.3 27.5 1.0
CA A:MET300 4.3 24.1 1.0
NH1 A:ARG129 4.3 48.2 1.0
CA A:GLU127 4.3 47.9 1.0
CA A:ASN301 4.3 33.9 1.0
N A:GLU127 4.4 50.1 1.0
OE2 A:GLU299 4.4 44.1 1.0
CG A:ASN301 4.5 42.2 1.0
CB A:GLU299 4.5 25.0 1.0
CD A:PRO302 4.5 53.0 1.0
CB A:ALA126 4.5 32.4 1.0
CG A:GLU127 4.5 23.8 1.0
CZ A:ARG129 4.6 47.8 1.0
CG A:GLU299 4.7 41.0 1.0
NH2 A:ARG129 4.7 37.7 1.0
CA A:ALA126 4.8 50.6 1.0

Potassium binding site 3 out of 19 in 1bxr

Go back to Potassium Binding Sites List in 1bxr
Potassium binding site 3 out of 19 in the Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1079

b:26.2
occ:1.00
 O A:VAL787 2.5 23.8 1.0
OG A:SER792 2.6 22.2 1.0
OE1 A:GLU761 2.7 26.9 1.0
ND1 A:HIS781 2.8 24.2 1.0
O A:GLN784 2.9 23.2 1.0
O A:GLU783 2.9 28.7 1.0
C A:GLN784 3.5 25.1 1.0
CB A:GLU761 3.6 29.9 1.0
CB A:SER792 3.6 15.4 1.0
C A:VAL787 3.7 20.8 1.0
C A:GLU783 3.7 23.6 1.0
CD A:GLU761 3.7 32.7 1.0
CE1 A:HIS781 3.7 17.4 1.0
CG A:HIS781 3.7 24.5 1.0
CB A:HIS781 3.9 45.9 1.0
N A:ALA785 4.1 23.0 1.0
CB A:VAL787 4.1 27.3 1.0
CG A:GLU761 4.2 36.4 1.0
N A:VAL787 4.2 23.6 1.0
CA A:ALA785 4.2 23.9 1.0
CA A:VAL787 4.2 17.7 1.0
N A:GLN784 4.3 29.7 1.0
CB A:GLU783 4.3 16.7 1.0
CA A:GLN784 4.3 35.0 1.0
O2' A:ANP1084 4.4 21.2 1.0
C A:HIS788 4.5 21.0 1.0
O A:HIS788 4.5 27.6 1.0
N A:SER789 4.5 22.1 1.0
CA A:GLU783 4.5 17.7 1.0
OE2 A:GLU761 4.5 29.5 1.0
O A:HOH1313 4.5 21.5 1.0
CA A:SER789 4.7 17.7 1.0
CG1 A:VAL787 4.7 12.1 1.0
N A:HIS788 4.8 20.9 1.0
N A:GLY786 4.8 32.3 1.0
C A:ALA785 4.9 28.1 1.0
NE2 A:HIS781 4.9 21.0 1.0
CD2 A:HIS781 4.9 26.5 1.0
CA A:GLU761 4.9 24.7 1.0
CA A:SER792 4.9 25.1 1.0
N A:GLU783 5.0 24.6 1.0

Potassium binding site 4 out of 19 in 1bxr

Go back to Potassium Binding Sites List in 1bxr
Potassium binding site 4 out of 19 in the Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K984

b:31.6
occ:1.00
 O B:ASP112 2.6 21.8 1.0
O B:HIS16 2.8 31.3 1.0
O B:HOH1063 2.8 45.2 1.0
O B:HOH1009 2.9 43.4 1.0
O B:HOH1010 3.1 31.6 1.0
C B:ASP112 3.8 25.5 1.0
O A:HOH1283 3.8 53.7 1.0
C B:HIS16 4.0 39.0 1.0
O A:HOH1496 4.0 38.4 1.0
O B:HOH1055 4.1 51.6 1.0
CA B:ILE113 4.2 24.6 1.0
CL B:CL982 4.3 30.2 1.0
NH2 A:ARG494 4.3 67.6 1.0
O A:HOH1597 4.3 58.4 1.0
CA B:GLY17 4.4 22.1 1.0
N B:ILE113 4.5 18.1 1.0
O B:HOH1008 4.6 37.9 1.0
CB B:ASP112 4.6 25.1 1.0
CG2 B:ILE113 4.7 16.7 1.0
N B:GLY17 4.7 26.0 1.0
CZ A:ARG494 4.7 38.8 1.0
NH1 A:ARG494 4.8 30.7 1.0
CA B:ASP112 4.8 19.9 1.0
CB B:ILE113 4.9 32.2 1.0

Potassium binding site 5 out of 19 in 1bxr

Go back to Potassium Binding Sites List in 1bxr
Potassium binding site 5 out of 19 in the Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1903

b:19.1
occ:1.00
 O C:ASP238 2.5 27.9 1.0
OE1 C:GLU215 2.6 26.2 1.0
O C:ILE242 2.6 26.1 1.0
O C:ALA239 2.7 17.6 1.0
OG C:SER247 2.7 15.8 1.0
OD1 C:ASN236 3.0 32.8 1.0
C C:ASP238 3.4 18.9 1.0
C C:ALA239 3.5 25.9 1.0
C C:ILE242 3.7 22.3 1.0
CD C:GLU215 3.8 16.8 1.0
CG C:ASN236 3.8 12.8 1.0
CB C:SER247 3.8 7.6 1.0
CB C:ASN236 3.8 15.6 1.0
N C:ALA239 4.2 14.6 1.0
CB C:GLU215 4.2 11.9 1.0
N C:ILE242 4.2 24.7 1.0
O2' C:ANP1900 4.3 23.3 1.0
CA C:ALA239 4.3 11.0 1.0
CB C:ASP238 4.3 18.5 1.0
CA C:ILE242 4.3 18.6 1.0
N C:MET240 4.3 19.4 1.0
CB C:ILE242 4.3 14.5 1.0
CA C:ASP238 4.4 14.8 1.0
CG C:GLU215 4.4 36.6 1.0
C C:HIS243 4.5 12.2 1.0
O C:HIS243 4.5 33.2 1.0
N C:THR244 4.5 26.0 1.0
CA C:MET240 4.5 13.4 1.0
OE2 C:GLU215 4.6 31.8 1.0
CA C:THR244 4.6 16.9 1.0
N C:HIS243 4.8 17.2 1.0
CG2 C:THR244 4.9 6.3 1.0
N C:GLY241 4.9 14.3 1.0
CG2 C:ILE242 4.9 16.6 1.0
C C:MET240 5.0 31.7 1.0
N C:ASP238 5.0 17.3 1.0

Potassium binding site 6 out of 19 in 1bxr

Go back to Potassium Binding Sites List in 1bxr
Potassium binding site 6 out of 19 in the Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1904

b:31.7
occ:1.00
 O C:MET300 2.8 26.0 1.0
O C:HOH4100 2.8 24.0 1.0
OE2 C:GLU127 2.8 38.7 1.0
O C:HOH4101 2.9 26.1 1.0
OE1 C:GLU299 2.9 28.8 1.0
O C:ALA126 3.1 27.3 1.0
O C:HOH4295 3.4 33.6 1.0
CD C:GLU127 3.6 46.1 1.0
OD1 C:ASN301 3.8 29.1 1.0
MN C:MN1901 3.8 29.0 1.0
C C:MET300 3.8 20.6 1.0
CD C:GLU299 3.9 22.0 1.0
C C:ALA126 3.9 24.4 1.0
OE1 C:GLU127 4.0 59.7 1.0
NH1 C:ARG129 4.1 30.7 1.0
CA C:GLU127 4.2 14.0 1.0
N C:MET300 4.4 21.7 1.0
N C:GLU127 4.4 25.1 1.0
CB C:GLU299 4.4 21.0 1.0
CA C:ASN301 4.4 23.0 1.0
N C:ASN301 4.5 20.4 1.0
CZ C:ARG129 4.5 24.1 1.0
CG C:ASN301 4.6 21.8 1.0
NH2 C:ARG129 4.6 17.9 1.0
CD C:PRO302 4.7 36.4 1.0
CG C:GLU299 4.7 10.6 1.0
CG C:GLU127 4.7 21.0 1.0
CB C:ALA126 4.8 19.9 1.0
OE2 C:GLU299 4.8 28.9 1.0
CA C:MET300 4.8 8.9 1.0
O C:GLU127 4.9 28.9 1.0
C C:GLU127 4.9 23.4 1.0
O2B C:ANP1900 4.9 28.3 1.0
CA C:ALA126 4.9 20.1 1.0
O C:HOH4294 5.0 19.1 1.0

Potassium binding site 7 out of 19 in 1bxr

Go back to Potassium Binding Sites List in 1bxr
Potassium binding site 7 out of 19 in the Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1913

b:30.9
occ:1.00
 O C:VAL787 2.6 38.4 1.0
OG C:SER792 2.7 20.7 1.0
OE1 C:GLU761 2.7 40.6 1.0
O C:GLU783 2.8 33.8 1.0
O C:GLN784 2.9 33.6 1.0
ND1 C:HIS781 2.9 35.2 1.0
C C:GLN784 3.5 32.2 1.0
CB C:SER792 3.6 17.4 1.0
C C:GLU783 3.6 27.2 1.0
CG C:HIS781 3.8 22.6 1.0
C C:VAL787 3.8 23.8 1.0
CB C:GLU761 3.8 18.0 1.0
CD C:GLU761 3.9 53.3 1.0
CB C:HIS781 3.9 45.4 1.0
CE1 C:HIS781 3.9 20.9 1.0
N C:ALA785 4.0 26.2 1.0
CB C:VAL787 4.1 18.5 1.0
CA C:ALA785 4.2 42.4 1.0
CA C:GLN784 4.3 30.8 1.0
N C:GLN784 4.3 32.3 1.0
CG C:GLU761 4.3 42.5 1.0
CA C:VAL787 4.3 64.7 1.0
N C:VAL787 4.4 36.0 1.0
CB C:GLU783 4.4 21.9 1.0
O2' C:ANP1910 4.5 36.0 1.0
CA C:GLU783 4.5 22.0 1.0
O C:HIS788 4.5 33.9 1.0
C C:HIS788 4.6 20.9 1.0
N C:SER789 4.6 29.9 1.0
CG1 C:VAL787 4.6 17.1 1.0
CA C:SER789 4.7 33.9 1.0
OE2 C:GLU761 4.8 55.5 1.0
C C:ALA785 4.8 44.8 1.0
O C:HOH4214 4.8 35.5 1.0
N C:GLY786 4.9 31.3 1.0
N C:HIS788 4.9 27.4 1.0
CD2 C:HIS781 4.9 28.4 1.0
CA C:SER792 5.0 27.0 1.0
NE2 C:HIS781 5.0 27.3 1.0
N C:GLU783 5.0 25.3 1.0

Potassium binding site 8 out of 19 in 1bxr

Go back to Potassium Binding Sites List in 1bxr
Potassium binding site 8 out of 19 in the Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K3985

b:54.7
occ:1.00
 O C:HOH4027 2.4 30.2 1.0
OG1 C:THR143 2.8 27.6 1.0
O C:THR143 2.9 26.2 1.0
O C:ALA144 3.0 32.5 1.0
O C:HOH4026 3.2 27.7 1.0
O C:HOH4461 3.2 59.1 1.0
O C:HOH4313 3.3 50.6 1.0
C C:ALA144 3.4 39.6 1.0
C C:THR143 3.5 19.3 1.0
N C:ARG145 3.8 25.2 1.0
CA C:ARG145 4.0 36.0 1.0
CB C:THR143 4.0 20.9 1.0
N C:ALA144 4.1 27.7 1.0
CA C:THR143 4.2 13.5 1.0
CA C:ALA144 4.2 16.7 1.0
N C:THR143 4.2 21.2 1.0
O C:HOH4462 4.4 46.5 1.0
OG C:SER146 4.5 29.2 1.0
OD1 C:ASP133 4.5 35.2 1.0
OD2 C:ASP133 4.6 48.7 1.0
N C:SER146 4.7 22.4 1.0
O C:HOH4460 4.8 39.0 1.0
C C:ARG145 4.8 23.6 1.0
O C:HOH4463 4.8 47.9 1.0

Potassium binding site 9 out of 19 in 1bxr

Go back to Potassium Binding Sites List in 1bxr
Potassium binding site 9 out of 19 in the Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K3984

b:49.7
occ:1.00
 O D:HOH1529 2.6 57.6 1.0
O D:HIS16 2.6 32.1 1.0
O C:HOH4183 2.7 32.5 1.0
O D:ASP112 2.7 36.2 1.0
O D:HOH1219 3.1 41.6 1.0
O C:HOH4184 3.8 33.0 1.0
C D:HIS16 3.8 23.9 1.0
C D:ASP112 4.0 24.0 1.0
NH2 C:ARG494 4.3 34.2 1.0
CL D:CL1982 4.3 32.1 1.0
O D:HOH1466 4.3 64.8 1.0
O C:HOH4400 4.4 37.4 1.0
CA D:ILE113 4.4 18.6 1.0
CA D:GLY17 4.6 17.4 1.0
CZ C:ARG494 4.6 27.7 1.0
O D:HOH1218 4.6 39.2 1.0
CB D:ASP112 4.6 29.7 1.0
N D:GLY17 4.7 23.1 1.0
N D:ILE113 4.7 32.5 1.0
NH1 C:ARG494 4.8 24.3 1.0
CG2 D:ILE113 4.8 17.1 1.0
CA D:HIS16 4.8 25.1 1.0
CA D:ASP112 4.9 24.2 1.0

Potassium binding site 10 out of 19 in 1bxr

Go back to Potassium Binding Sites List in 1bxr
Potassium binding site 10 out of 19 in the Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Structure of Carbamoyl Phosphate Synthetase Complexed with the Atp Analog Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K2903

b:27.1
occ:1.00
 OE1 E:GLU215 2.5 32.4 1.0
O E:ILE242 2.5 31.4 1.0
OG E:SER247 2.6 22.5 1.0
O E:ASP238 2.6 28.5 1.0
O E:ALA239 2.9 32.1 1.0
OD1 E:ASN236 2.9 32.7 1.0
C E:ASP238 3.6 30.1 1.0
C E:ALA239 3.6 21.3 1.0
CB E:SER247 3.7 10.3 1.0
C E:ILE242 3.7 24.5 1.0
CG E:ASN236 3.7 22.8 1.0
CD E:GLU215 3.7 30.4 1.0
CB E:ASN236 3.9 19.0 1.0
O2' E:ANP2900 4.1 27.3 1.0
CB E:ILE242 4.1 24.8 1.0
CB E:GLU215 4.2 15.4 1.0
O E:HIS243 4.3 27.5 1.0
CA E:THR244 4.3 14.8 1.0
N E:THR244 4.3 24.2 1.0
CA E:ILE242 4.3 18.2 1.0
N E:MET240 4.3 32.0 1.0
N E:ALA239 4.3 27.8 1.0
N E:ILE242 4.3 29.0 1.0
CB E:ASP238 4.4 16.6 1.0
C E:HIS243 4.4 19.9 1.0
CA E:ALA239 4.4 51.9 1.0
CG E:GLU215 4.4 23.9 1.0
CA E:ASP238 4.5 25.7 1.0
CA E:MET240 4.5 18.4 1.0
OE2 E:GLU215 4.6 37.0 1.0
CG2 E:THR244 4.6 25.0 1.0
CG2 E:ILE242 4.6 14.3 1.0
N E:HIS243 4.8 24.2 1.0
O3' E:ANP2900 5.0 24.5 1.0
ND2 E:ASN236 5.0 21.9 1.0
C E:MET240 5.0 26.8 1.0

Reference:

J.B.Thoden, G.Wesenberg, F.M.Raushel, H.M.Holden. Carbamoyl Phosphate Synthetase: Closure of the B-Domain As A Result of Nucleotide Binding. Biochemistry V. 38 2347 1999.
ISSN: ISSN 0006-2960
PubMed: 10029528
DOI: 10.1021/BI982517H
Page generated: Mon Aug 12 04:05:46 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy