Potassium in PDB 1bl8: Potassium Channel (Kcsa) From Streptomyces Lividans
Protein crystallography data
The structure of Potassium Channel (Kcsa) From Streptomyces Lividans, PDB code: 1bl8
was solved by
D.A.Doyle,
J.M.Cabral,
R.A.Pfuetzner,
A.Kuo,
J.M.Gulbis,
S.L.Cohen,
B.T.Chait,
R.Mackinnon,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
10.00 /
3.20
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
128.780,
68.930,
112.040,
90.00,
124.63,
90.00
|
R / Rfree (%)
|
28 /
29
|
Potassium Binding Sites:
The binding sites of Potassium atom in the Potassium Channel (Kcsa) From Streptomyces Lividans
(pdb code 1bl8). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the
Potassium Channel (Kcsa) From Streptomyces Lividans, PDB code: 1bl8:
Jump to Potassium binding site number:
1;
2;
3;
Potassium binding site 1 out
of 3 in 1bl8
Go back to
Potassium Binding Sites List in 1bl8
Potassium binding site 1 out
of 3 in the Potassium Channel (Kcsa) From Streptomyces Lividans
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Potassium Channel (Kcsa) From Streptomyces Lividans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K401
b:57.7
occ:1.00
|
O
|
B:TYR78
|
3.1
|
53.3
|
1.0
|
O
|
D:TYR78
|
3.1
|
47.6
|
1.0
|
O
|
A:TYR78
|
3.1
|
62.8
|
1.0
|
O
|
B:GLY77
|
3.1
|
0.6
|
1.0
|
O
|
A:GLY77
|
3.1
|
0.3
|
1.0
|
O
|
C:GLY77
|
3.1
|
0.6
|
1.0
|
O
|
D:GLY77
|
3.1
|
0.3
|
1.0
|
O
|
C:TYR78
|
3.2
|
80.0
|
1.0
|
O
|
B:HOH500
|
3.4
|
66.2
|
1.0
|
C
|
B:TYR78
|
3.6
|
53.3
|
1.0
|
C
|
A:TYR78
|
3.7
|
62.8
|
1.0
|
C
|
D:TYR78
|
3.7
|
47.6
|
1.0
|
C
|
C:TYR78
|
3.8
|
80.0
|
1.0
|
N
|
B:GLY79
|
4.2
|
41.5
|
1.0
|
N
|
A:GLY79
|
4.2
|
72.4
|
1.0
|
N
|
D:GLY79
|
4.2
|
77.9
|
1.0
|
C
|
B:GLY77
|
4.2
|
0.6
|
1.0
|
CA
|
B:GLY79
|
4.2
|
41.5
|
1.0
|
C
|
A:GLY77
|
4.3
|
0.3
|
1.0
|
CA
|
A:GLY79
|
4.3
|
72.4
|
1.0
|
C
|
D:GLY77
|
4.3
|
0.3
|
1.0
|
CA
|
D:GLY79
|
4.3
|
77.9
|
1.0
|
N
|
C:GLY79
|
4.3
|
74.9
|
1.0
|
C
|
C:GLY77
|
4.3
|
0.6
|
1.0
|
CA
|
C:GLY79
|
4.4
|
74.9
|
1.0
|
CA
|
B:TYR78
|
4.4
|
53.3
|
1.0
|
CA
|
A:TYR78
|
4.5
|
62.8
|
1.0
|
CA
|
D:TYR78
|
4.5
|
47.6
|
1.0
|
CA
|
C:TYR78
|
4.5
|
80.0
|
1.0
|
N
|
B:TYR78
|
4.8
|
53.3
|
1.0
|
N
|
A:TYR78
|
4.9
|
62.8
|
1.0
|
N
|
D:TYR78
|
4.9
|
47.6
|
1.0
|
N
|
C:TYR78
|
4.9
|
80.0
|
1.0
|
|
Potassium binding site 2 out
of 3 in 1bl8
Go back to
Potassium Binding Sites List in 1bl8
Potassium binding site 2 out
of 3 in the Potassium Channel (Kcsa) From Streptomyces Lividans
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Potassium Channel (Kcsa) From Streptomyces Lividans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K402
b:74.8
occ:1.00
|
K
|
A:K403
|
3.3
|
75.5
|
1.0
|
O
|
C:THR75
|
3.3
|
65.2
|
1.0
|
O
|
B:THR75
|
3.4
|
73.5
|
1.0
|
O
|
D:THR75
|
3.4
|
67.2
|
1.0
|
O
|
A:THR75
|
3.4
|
71.5
|
1.0
|
O
|
B:VAL76
|
3.4
|
0.6
|
1.0
|
O
|
D:VAL76
|
3.4
|
0.1
|
1.0
|
O
|
A:VAL76
|
3.4
|
0.8
|
1.0
|
O
|
C:VAL76
|
3.5
|
0.7
|
1.0
|
C
|
B:VAL76
|
3.6
|
0.6
|
1.0
|
CA
|
B:VAL76
|
3.6
|
0.6
|
1.0
|
C
|
D:VAL76
|
3.6
|
0.1
|
1.0
|
CA
|
D:VAL76
|
3.7
|
0.1
|
1.0
|
C
|
A:VAL76
|
3.7
|
0.8
|
1.0
|
CA
|
C:VAL76
|
3.7
|
0.7
|
1.0
|
CA
|
A:VAL76
|
3.7
|
0.8
|
1.0
|
C
|
C:VAL76
|
3.7
|
0.7
|
1.0
|
O
|
B:HOH500
|
3.9
|
66.2
|
1.0
|
C
|
C:THR75
|
4.0
|
65.2
|
1.0
|
C
|
B:THR75
|
4.0
|
73.5
|
1.0
|
C
|
D:THR75
|
4.0
|
67.2
|
1.0
|
C
|
A:THR75
|
4.0
|
71.5
|
1.0
|
N
|
B:VAL76
|
4.1
|
0.6
|
1.0
|
N
|
C:VAL76
|
4.1
|
0.7
|
1.0
|
N
|
D:VAL76
|
4.1
|
0.1
|
1.0
|
N
|
A:VAL76
|
4.2
|
0.8
|
1.0
|
OG1
|
C:THR75
|
4.3
|
51.9
|
1.0
|
OG1
|
B:THR75
|
4.3
|
51.4
|
1.0
|
OG1
|
A:THR75
|
4.3
|
78.6
|
1.0
|
OG1
|
D:THR75
|
4.3
|
71.1
|
1.0
|
N
|
B:GLY77
|
4.5
|
0.6
|
1.0
|
N
|
D:GLY77
|
4.5
|
0.3
|
1.0
|
N
|
A:GLY77
|
4.5
|
0.3
|
1.0
|
N
|
C:GLY77
|
4.6
|
0.6
|
1.0
|
CB
|
B:VAL76
|
5.0
|
55.2
|
1.0
|
CB
|
D:VAL76
|
5.0
|
82.8
|
1.0
|
|
Potassium binding site 3 out
of 3 in 1bl8
Go back to
Potassium Binding Sites List in 1bl8
Potassium binding site 3 out
of 3 in the Potassium Channel (Kcsa) From Streptomyces Lividans
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Potassium Channel (Kcsa) From Streptomyces Lividans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K403
b:75.5
occ:1.00
|
O
|
B:THR75
|
2.9
|
73.5
|
1.0
|
OG1
|
C:THR75
|
3.0
|
51.9
|
1.0
|
OG1
|
B:THR75
|
3.0
|
51.4
|
1.0
|
O
|
C:THR75
|
3.0
|
65.2
|
1.0
|
O
|
A:THR75
|
3.1
|
71.5
|
1.0
|
O
|
D:THR75
|
3.1
|
67.2
|
1.0
|
OG1
|
A:THR75
|
3.2
|
78.6
|
1.0
|
OG1
|
D:THR75
|
3.2
|
71.1
|
1.0
|
K
|
A:K402
|
3.3
|
74.8
|
1.0
|
C
|
B:THR75
|
4.1
|
73.5
|
1.0
|
C
|
C:THR75
|
4.2
|
65.2
|
1.0
|
C
|
A:THR75
|
4.2
|
71.5
|
1.0
|
C
|
D:THR75
|
4.3
|
67.2
|
1.0
|
CB
|
C:THR75
|
4.4
|
51.9
|
1.0
|
CB
|
B:THR75
|
4.4
|
51.4
|
1.0
|
CB
|
A:THR75
|
4.5
|
78.6
|
1.0
|
CB
|
D:THR75
|
4.6
|
71.1
|
1.0
|
O
|
B:THR74
|
4.8
|
23.1
|
1.0
|
CA
|
B:THR75
|
4.9
|
73.5
|
1.0
|
CG2
|
C:THR75
|
4.9
|
51.9
|
1.0
|
O
|
C:THR74
|
4.9
|
7.1
|
1.0
|
CG2
|
B:THR75
|
4.9
|
51.4
|
1.0
|
CA
|
C:THR75
|
5.0
|
65.2
|
1.0
|
O
|
A:THR74
|
5.0
|
48.2
|
1.0
|
|
Reference:
D.A.Doyle,
J.Morais Cabral,
R.A.Pfuetzner,
A.Kuo,
J.M.Gulbis,
S.L.Cohen,
B.T.Chait,
R.Mackinnon.
The Structure of the Potassium Channel: Molecular Basis of K+ Conduction and Selectivity. Science V. 280 69 1998.
ISSN: ISSN 0036-8075
PubMed: 9525859
DOI: 10.1126/SCIENCE.280.5360.69
Page generated: Mon Aug 12 04:04:09 2024
|