Potassium in PDB 9bzc: Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs

The structure of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs, PDB code: 9bzc was solved by C.P.Jones, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.86 / 2.52
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	99.864, 47.673, 74.11, 90, 129.26, 90
R / Rfree (%)	19.5 / 22.6

The structure of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs also contains other interesting chemical elements:

Caesium	(Cs)	2 atoms
Magnesium	(Mg)	2 atoms

The binding sites of Potassium atom in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs (pdb code 9bzc). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs, PDB code: 9bzc:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs within 5.0Å range: probe atom residue distance (Å) B Occ A:K106 b:67.5 occ:1.00 O2' A:U13 2.6 70.0 1.0 OP2 A:A79 2.7 65.0 1.0 OP2 A:G14 2.7 57.4 1.0 O2' A:G78 3.0 72.1 1.0 O1 A:AMZ105 3.0 66.6 1.0 O3' A:U13 3.2 64.1 1.0 P A:G14 3.5 62.6 1.0 C2' A:U13 3.8 67.0 1.0 CS A:CS102 3.9 59.9 0.1 C3' A:U13 4.0 65.5 1.0 P A:A79 4.0 76.6 1.0 C2' A:G78 4.1 67.8 1.0 O3' A:G78 4.2 70.4 1.0 C1' A:G78 4.2 69.5 1.0 C2 A:AMZ105 4.4 64.0 1.0 N7 A:G14 4.4 55.9 1.0 OP1 A:G14 4.5 68.2 1.0 C8 A:G78 4.5 66.7 1.0 N9 A:G78 4.5 69.9 1.0 C8 A:G14 4.6 56.9 1.0 O5' A:G14 4.6 63.0 1.0 C4' A:U13 4.6 65.8 1.0 C3' A:G78 4.8 66.5 1.0 OP1 A:A79 4.8 73.4 1.0 O2 A:AMZ105 4.9 61.1 1.0 C1' A:U13 4.9 68.2 1.0

Potassium binding site 2 out of 7 in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs within 5.0Å range: probe atom residue distance (Å) B Occ A:K107 b:96.0 occ:1.00 O2' A:U27 3.0 85.7 1.0 O2 A:U27 3.6 90.6 1.0 O3' A:U27 3.7 89.0 1.0 C2' A:U27 4.0 89.0 1.0 C1' A:U27 4.0 90.5 1.0 C5' A:U28 4.3 83.6 1.0 C2 A:U27 4.4 86.7 1.0 OP1 A:U28 4.5 96.4 1.0 C3' A:U27 4.5 85.9 1.0 P A:U28 4.6 96.1 1.0 N1 A:U27 4.7 89.1 1.0 O5' A:U28 4.8 85.3 1.0

Potassium binding site 3 out of 7 in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs within 5.0Å range: probe atom residue distance (Å) B Occ A:K108 b:97.8 occ:1.00 O2' A:G17 3.5 66.1 1.0 O4' A:G18 3.6 70.9 1.0 C1' A:G18 4.1 67.6 1.0 N3 A:G17 4.3 66.0 1.0 C4' A:G18 4.3 73.5 1.0 C2' A:G17 4.3 66.6 1.0 N2 A:G17 4.5 68.0 1.0 O2' A:G18 4.8 78.9 1.0 C1' A:G17 4.8 61.5 1.0 O5' A:G18 4.8 71.1 1.0 C2 A:G17 4.9 66.3 1.0 C5' A:G18 5.0 68.9 1.0

Potassium binding site 4 out of 7 in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs within 5.0Å range: probe atom residue distance (Å) B Occ A:K109 b:74.8 occ:1.00 O6 A:G18 3.0 68.2 1.0 O6 A:G17 3.0 63.0 1.0 O2' A:A20 3.1 82.8 1.0 O A:HOH207 3.1 63.9 1.0 N7 A:G17 3.7 60.5 1.0 C6 A:G17 3.8 61.6 1.0 N4 A:C16 3.8 46.6 1.0 C2' A:A20 3.8 73.0 1.0 C6 A:G18 3.9 63.4 1.0 C5 A:G17 4.0 61.5 1.0 N7 A:G18 4.1 67.0 1.0 N4 A:C80 4.2 67.1 1.0 C5 A:G18 4.4 61.2 1.0 C4 A:C16 4.4 53.6 1.0 C3' A:A20 4.4 75.5 1.0 C5 A:C16 4.8 51.7 1.0 N4 A:C81 4.8 61.5 1.0 C8 A:G17 4.8 60.2 1.0 O3' A:A20 4.9 79.4 1.0 N1 A:G17 5.0 61.9 1.0

Potassium binding site 5 out of 7 in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs within 5.0Å range: probe atom residue distance (Å) B Occ A:K110 b:91.2 occ:1.00 O3' A:G36 3.3 76.4 1.0 OP1 A:A37 3.3 69.0 1.0 OP1 A:C80 3.9 81.9 1.0 P A:A37 4.0 81.1 1.0 C3' A:G36 4.4 73.2 1.0 C4' A:G36 4.5 77.8 1.0 O2' A:G36 4.6 75.7 1.0 OP2 A:C80 4.8 82.0 1.0 P A:C80 4.9 81.5 1.0 C5' A:G36 4.9 81.1 1.0 OP2 A:A37 5.0 71.5 1.0

Potassium binding site 6 out of 7 in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs within 5.0Å range: probe atom residue distance (Å) B Occ A:K111 b:98.0 occ:1.00 O6 A:G24 3.2 69.8 1.0 O6 A:G23 3.2 79.0 1.0 N6 A:A25 4.0 90.4 1.0 N7 A:G23 4.1 77.1 1.0 C6 A:G23 4.1 76.7 1.0 OP1 A:A15 4.2 74.3 1.0 C6 A:G24 4.2 76.9 1.0 O4 A:U22 4.3 74.4 1.0 N4 A:C30 4.3 58.9 1.0 C6 A:A25 4.4 88.9 1.0 N7 A:G24 4.4 73.6 1.0 C5 A:G23 4.5 79.2 1.0 N1 A:A25 4.5 88.1 1.0 C5 A:G24 4.7 84.3 1.0 C4 A:U22 4.8 81.5 1.0 N4 A:C31 4.9 60.8 1.0

Potassium binding site 7 out of 7 in the Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs within 5.0Å range: probe atom residue distance (Å) B Occ A:K112 b:111.2 occ:1.00 OP2 A:U83 3.7 60.0 1.0 OP1 A:U83 4.2 86.5 1.0 P A:U83 4.4 70.6 1.0 OP1 A:G82 4.6 86.4 1.0

C.P.Jones, B.Tran, A.R.Ferre-D'amare. Cocrystal Structure of Clostridium Beijerinckii Ztp Riboswitch with Zmp and Cs To Be Published.