Potassium in PDB 9ctu: Cryo-Em Structure of Sars-Cov-2 M (Short Conformation)Bound to C1P

The binding sites of Potassium atom in the Cryo-Em Structure of Sars-Cov-2 M (Short Conformation)Bound to C1P (pdb code 9ctu). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Cryo-Em Structure of Sars-Cov-2 M (Short Conformation)Bound to C1P, PDB code: 9ctu:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the Cryo-Em Structure of Sars-Cov-2 M (Short Conformation)Bound to C1P


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryo-Em Structure of Sars-Cov-2 M (Short Conformation)Bound to C1P within 5.0Å range: probe atom residue distance (Å) B Occ A:K302 b:54.4 occ:1.00 OG A:SER99 2.7 53.8 1.0 O A:ASN113 2.7 58.2 1.0 OD1 A:ASN117 2.7 66.2 1.0 O A:THR116 2.7 63.2 1.0 O A:SER111 2.9 56.1 1.0 C A:THR116 3.7 61.6 1.0 CG A:ASN117 3.8 63.1 1.0 CB A:SER99 3.9 49.7 1.0 C A:ASN113 3.9 55.0 1.0 CE1 A:TYR95 3.9 52.5 1.0 CA A:ASN117 3.9 57.0 1.0 C A:SER111 4.0 55.8 1.0 CD1 A:TYR95 4.1 54.7 1.0 N A:ASN113 4.1 52.9 1.0 N A:ASN117 4.2 58.1 1.0 ND2 A:ASN113 4.3 56.5 1.0 CA A:SER99 4.3 51.6 1.0 C A:PHE112 4.3 52.9 1.0 OD1 A:ASN113 4.3 57.7 1.0 CG A:ASN113 4.4 55.4 1.0 CB A:ASN117 4.4 57.1 1.0 CA A:PHE112 4.5 52.5 1.0 CA A:ASN113 4.6 52.1 1.0 N A:PHE112 4.7 57.2 1.0 N A:THR116 4.7 63.3 1.0 N A:SER99 4.8 54.7 1.0 CD2 A:LEU102 4.8 54.5 1.0 CA A:THR116 4.8 62.2 1.0 N A:PRO114 4.9 53.1 1.0 O A:PHE112 4.9 54.0 1.0 ND2 A:ASN117 4.9 64.5 1.0 CA A:PRO114 5.0 51.8 1.0

Potassium binding site 2 out of 2 in the Cryo-Em Structure of Sars-Cov-2 M (Short Conformation)Bound to C1P


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryo-Em Structure of Sars-Cov-2 M (Short Conformation)Bound to C1P within 5.0Å range: probe atom residue distance (Å) B Occ B:K302 b:56.6 occ:1.00 OG B:SER99 2.7 59.9 1.0 OD1 B:ASN117 2.7 79.2 1.0 O B:ASN113 2.7 64.2 1.0 O B:THR116 2.8 71.8 1.0 O B:SER111 2.9 64.4 1.0 C B:THR116 3.7 70.0 1.0 CG B:ASN117 3.8 74.2 1.0 CB B:SER99 3.9 54.6 1.0 C B:ASN113 3.9 58.2 1.0 CE1 B:TYR95 3.9 52.8 1.0 C B:SER111 4.0 62.2 1.0 CA B:ASN117 4.0 65.3 1.0 CD1 B:TYR95 4.1 56.2 1.0 N B:ASN113 4.1 55.2 1.0 N B:ASN117 4.2 67.2 1.0 CA B:SER99 4.3 57.9 1.0 C B:PHE112 4.3 56.7 1.0 ND2 B:ASN113 4.3 64.2 1.0 CG B:ASN113 4.4 59.4 1.0 OD1 B:ASN113 4.4 63.6 1.0 CB B:ASN117 4.4 64.9 1.0 CA B:PHE112 4.4 56.0 1.0 CA B:ASN113 4.6 54.6 1.0 N B:PHE112 4.6 63.6 1.0 N B:SER99 4.7 62.4 1.0 N B:THR116 4.8 68.2 1.0 CD2 B:LEU102 4.8 60.2 1.0 O B:PHE112 4.9 60.3 1.0 N B:PRO114 4.9 54.4 1.0 CA B:THR116 4.9 67.1 1.0 ND2 B:ASN117 4.9 69.1 1.0 O B:TYR95 4.9 65.0 1.0 CA B:PRO114 5.0 53.7 1.0 CA B:SER111 5.0 54.8 1.0

M.Dutta, K.A.Dolan, S.Amiar, E.J.Bass, R.Sultana, G.A.Voth, S.G.Brohawn, R.V.Stahelin. Direct Lipid Interactions Control Sars-Cov-2 M Protein Conformational Dynamics and Virus Assembly To Be Published.