Potassium in PDB 9au1: Sars-Cov-2 Xbb.1.5 Rbd Bound to the Vir-7229 and the S309 Fab Fragments

The structure of Sars-Cov-2 Xbb.1.5 Rbd Bound to the Vir-7229 and the S309 Fab Fragments, PDB code: 9au1 was solved by T.Rietz, Y.J.Park, J.Errico, N.Czudnochowski, J.C.Nix, D.Corti, G.Snell, A.D.Marco, D.Pinto, E.Cameroni, Seattle Structural Genomics Center Forinfectious Disease (Ssgcid), D.Veesler, Structural Genomics Consortium(Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.98 / 2.41
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	73.726, 112.525, 170.314, 90, 90, 90
R / Rfree (%)	22.7 / 25.7

The binding sites of Potassium atom in the Sars-Cov-2 Xbb.1.5 Rbd Bound to the Vir-7229 and the S309 Fab Fragments (pdb code 9au1). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Sars-Cov-2 Xbb.1.5 Rbd Bound to the Vir-7229 and the S309 Fab Fragments, PDB code: 9au1:

Potassium binding site 1 out of 1 in the Sars-Cov-2 Xbb.1.5 Rbd Bound to the Vir-7229 and the S309 Fab Fragments


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Sars-Cov-2 Xbb.1.5 Rbd Bound to the Vir-7229 and the S309 Fab Fragments within 5.0Å range: probe atom residue distance (Å) B Occ N:K301 b:205.7 occ:1.00 OG N:SER202 3.5 73.3 1.0 O N:THR200 4.2 75.5 1.0 C N:THR200 4.4 76.3 1.0 CB N:SER202 4.5 72.3 1.0 N N:SER202 4.5 73.0 1.0 CG2 N:THR197 4.6 72.2 1.0 N N:THR201 4.6 75.1 1.0 C N:THR201 4.7 72.3 1.0 CA N:THR200 4.9 77.1 1.0 CA N:THR201 4.9 73.3 1.0 O N:GLY199 4.9 78.3 1.0

L.E.Rosen, M.A.Tortorici, A.De Marco, D.Pinto, W.B.Foreman, A.L.Taylor, Y.J.Park, D.Bohan, T.Rietz, J.M.Errico, K.Hauser, H.V.Dang, J.W.Chartron, M.Giurdanella, G.Cusumano, C.Saliba, F.Zatta, K.R.Sprouse, A.Addetia, S.K.Zepeda, J.Brown, J.Lee, E.Dellota Jr., A.Rajesh, J.Noack, Q.Tao, Y.Dacosta, B.Tsu, R.Acosta, S.Subramanian, G.D.De Melo, L.Kergoat, I.Zhang, Z.Liu, B.Guarino, M.A.Schmid, G.Schnell, J.L.Miller, F.A.Lempp, N.Czudnochowski, E.Cameroni, S.P.J.Whelan, H.Bourhy, L.A.Purcell, F.Benigni, J.Di Iulio, M.S.Pizzuto, A.Lanzavecchia, A.Telenti, G.Snell, D.Corti, D.Veesler, T.N.Starr. A Potent Pan-Sarbecovirus Neutralizing Antibody Resilient to Epitope Diversification. Cell 2024.
ISSN: ISSN 1097-4172
PubMed: 39383863
DOI: 10.1016/J.CELL.2024.09.026