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Potassium in PDB 8uf6: Structure of Trek-1(K2P2.1) with ML336

Protein crystallography data

The structure of Structure of Trek-1(K2P2.1) with ML336, PDB code: 8uf6 was solved by M.Lolicato, A.Mondal, D.L.Minor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.90 / 2.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.953, 118.597, 130.873, 90, 90, 90
R / Rfree (%) 26.7 / 31.3

Other elements in 8uf6:

The structure of Structure of Trek-1(K2P2.1) with ML336 also contains other interesting chemical elements:

Cadmium (Cd) 2 atoms
Chlorine (Cl) 4 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Structure of Trek-1(K2P2.1) with ML336 (pdb code 8uf6). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Structure of Trek-1(K2P2.1) with ML336, PDB code: 8uf6:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in 8uf6

Go back to Potassium Binding Sites List in 8uf6
Potassium binding site 1 out of 6 in the Structure of Trek-1(K2P2.1) with ML336


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of Trek-1(K2P2.1) with ML336 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K404

b:130.0
occ:1.00
 OG1 A:THR251 4.4 80.2 1.0
OG1 B:THR142 4.7 62.2 1.0

Potassium binding site 2 out of 6 in 8uf6

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Potassium binding site 2 out of 6 in the Structure of Trek-1(K2P2.1) with ML336


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of Trek-1(K2P2.1) with ML336 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K405

b:81.9
occ:1.00
 O A:GLY144 2.6 77.6 1.0
O B:GLY144 2.7 89.3 1.0
O B:ILE252 2.7 75.0 1.0
O B:GLY253 2.7 77.7 1.0
O A:ILE143 2.7 67.8 1.0
O A:ILE252 2.8 55.0 1.0
O A:GLY253 2.8 62.7 1.0
O B:ILE143 2.8 79.7 1.0
K B:K405 2.9 72.0 1.0
K B:K404 3.5 77.9 1.0
C A:GLY144 3.5 79.7 1.0
C B:GLY253 3.5 78.2 1.0
C B:GLY144 3.6 82.6 1.0
C A:GLY253 3.6 69.2 1.0
C B:ILE252 3.8 69.3 1.0
C A:ILE143 3.9 72.8 1.0
C A:ILE252 3.9 75.9 1.0
C B:ILE143 4.0 68.2 1.0
CA A:GLY144 4.0 62.1 1.0
CA B:GLY144 4.0 68.0 1.0
CA B:GLY253 4.0 73.8 1.0
CA A:GLY253 4.1 53.0 1.0
N A:GLY144 4.4 64.5 1.0
N B:GLY253 4.4 73.8 1.0
N A:GLY253 4.4 67.5 1.0
N B:GLY144 4.4 63.7 1.0
N A:PHE145 4.5 81.9 1.0
N B:PHE254 4.5 83.6 1.0
N A:PHE254 4.6 55.9 1.0
N B:PHE145 4.6 78.3 1.0
O A:THR251 4.8 56.0 1.0
CA A:PHE145 4.9 66.9 1.0
O B:THR251 4.9 66.8 1.0
CA B:PHE254 4.9 72.8 1.0
O A:THR142 5.0 87.8 1.0
CA B:PHE145 5.0 68.6 1.0
CA A:PHE254 5.0 55.1 1.0

Potassium binding site 3 out of 6 in 8uf6

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Potassium binding site 3 out of 6 in the Structure of Trek-1(K2P2.1) with ML336


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structure of Trek-1(K2P2.1) with ML336 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K406

b:70.3
occ:1.00
 OG1 A:THR251 2.8 80.2 1.0
OG1 B:THR251 2.8 83.8 1.0
O B:THR251 2.8 66.8 1.0
O A:THR251 2.9 56.0 1.0
O B:THR142 3.0 55.0 1.0
OG1 B:THR142 3.0 62.2 1.0
O A:THR142 3.0 87.8 1.0
OG1 A:THR142 3.1 63.9 1.0
CB A:THR251 3.3 66.2 1.0
CB B:THR251 3.3 65.3 1.0
K B:K405 3.4 72.0 1.0
C A:THR251 3.7 57.3 1.0
C B:THR251 3.7 76.5 1.0
CB B:THR142 3.8 62.5 1.0
CB A:THR142 3.8 66.9 1.0
C B:THR142 3.9 66.9 1.0
C A:THR142 3.9 77.0 1.0
CA A:THR251 4.1 69.3 1.0
CA B:THR251 4.2 73.1 1.0
CG2 A:THR251 4.5 91.8 1.0
CA B:THR142 4.5 73.0 1.0
CG2 B:THR251 4.5 51.4 1.0
CA A:THR142 4.5 74.2 1.0
N A:ILE252 4.7 56.2 1.0
N B:ILE252 4.8 80.2 1.0
N B:ILE143 4.8 65.5 1.0
N A:ILE143 4.9 55.7 1.0
O B:THR250 4.9 69.2 1.0
O A:THR250 4.9 86.9 1.0

Potassium binding site 4 out of 6 in 8uf6

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Potassium binding site 4 out of 6 in the Structure of Trek-1(K2P2.1) with ML336


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Structure of Trek-1(K2P2.1) with ML336 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K403

b:141.9
occ:1.00
 O B:GLY146 4.3 91.9 1.0
C B:GLY146 4.3 75.1 1.0
N B:ASN147 4.4 86.1 1.0
O B:PHE145 4.5 85.5 1.0
CA B:ASN147 4.6 81.5 1.0
O B:PHE254 4.7 81.2 1.0
O B:GLY255 4.9 82.5 1.0
CA B:GLY146 4.9 77.8 1.0

Potassium binding site 5 out of 6 in 8uf6

Go back to Potassium Binding Sites List in 8uf6
Potassium binding site 5 out of 6 in the Structure of Trek-1(K2P2.1) with ML336


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Structure of Trek-1(K2P2.1) with ML336 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K404

b:77.9
occ:1.00
 O B:PHE254 2.7 81.2 1.0
O B:PHE145 2.7 85.5 1.0
O A:PHE145 2.8 80.9 1.0
O A:PHE254 2.8 70.2 1.0
O B:GLY144 3.0 89.3 1.0
O B:GLY253 3.0 77.7 1.0
O A:GLY144 3.1 77.6 1.0
O A:GLY253 3.1 62.7 1.0
C B:PHE145 3.4 95.2 1.0
C B:PHE254 3.4 83.3 1.0
C A:PHE145 3.4 77.5 1.0
K A:K405 3.5 81.9 1.0
C A:PHE254 3.5 62.5 1.0
CA B:PHE254 4.0 72.8 1.0
CA A:PHE254 4.0 55.1 1.0
N B:GLY146 4.1 88.0 1.0
C B:GLY253 4.1 78.2 1.0
C B:GLY144 4.1 82.6 1.0
CA B:PHE145 4.1 68.6 1.0
N A:GLY146 4.1 81.4 1.0
CA A:PHE145 4.1 66.9 1.0
C A:GLY253 4.2 69.2 1.0
C A:GLY144 4.2 79.7 1.0
CA B:GLY146 4.2 77.8 1.0
CA A:GLY146 4.3 82.0 1.0
N B:GLY255 4.3 82.7 1.0
N A:GLY255 4.5 71.9 1.0
N B:PHE254 4.5 83.6 1.0
N A:PHE254 4.6 55.9 1.0
N B:PHE145 4.6 78.3 1.0
N A:PHE145 4.7 81.9 1.0
CA B:GLY255 4.7 73.9 1.0
CA A:GLY255 4.9 76.8 1.0

Potassium binding site 6 out of 6 in 8uf6

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Potassium binding site 6 out of 6 in the Structure of Trek-1(K2P2.1) with ML336


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Structure of Trek-1(K2P2.1) with ML336 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K405

b:72.0
occ:1.00
 O B:THR251 2.6 66.8 1.0
O A:THR251 2.6 56.0 1.0
O A:THR142 2.7 87.8 1.0
O B:ILE252 2.7 75.0 1.0
O A:ILE143 2.8 67.8 1.0
O B:ILE143 2.8 79.7 1.0
O B:THR142 2.9 55.0 1.0
O A:ILE252 2.9 55.0 1.0
K A:K405 2.9 81.9 1.0
K A:K406 3.4 70.3 1.0
C B:ILE252 3.5 69.3 1.0
C A:ILE143 3.5 72.8 1.0
C B:ILE143 3.6 68.2 1.0
C A:ILE252 3.6 75.9 1.0
C B:THR251 3.7 76.5 1.0
C A:THR251 3.8 57.3 1.0
C A:THR142 3.9 77.0 1.0
CA B:ILE252 4.0 80.8 1.0
CA A:ILE143 4.0 72.1 1.0
C B:THR142 4.0 66.9 1.0
CA B:ILE143 4.1 69.1 1.0
CA A:ILE252 4.1 68.0 1.0
N B:ILE252 4.3 80.2 1.0
N A:ILE143 4.4 55.7 1.0
N A:GLY144 4.4 64.5 1.0
N A:ILE252 4.4 56.2 1.0
N B:GLY253 4.5 73.8 1.0
N B:GLY144 4.5 63.7 1.0
N B:ILE143 4.6 65.5 1.0
N A:GLY253 4.6 67.5 1.0
CA A:GLY144 4.8 62.1 1.0
O A:GLY144 4.8 77.6 1.0
CA B:GLY253 4.9 73.8 1.0
CA B:THR251 4.9 73.1 1.0
CA B:GLY144 4.9 68.0 1.0
CA A:THR251 4.9 69.3 1.0
O B:GLY144 4.9 89.3 1.0
CA A:GLY253 4.9 53.0 1.0
O B:GLY253 4.9 77.7 1.0
O A:GLY253 5.0 62.7 1.0

Reference:

M.Lolicato, A.Mondal, D.L.Minor. Structure of Trek-1(K2P2.1) with ML336 To Be Published.
Page generated: Tue Aug 13 01:08:45 2024

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