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Potassium in PDB 8uec: Structure of Trek-1CG*:CAT335A

Protein crystallography data

The structure of Structure of Trek-1CG*:CAT335A, PDB code: 8uec was solved by A.Mondal, H.Lee, D.L.Minor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.35 / 3.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.213, 120.568, 128.613, 90, 90, 90
R / Rfree (%) 27.3 / 29.3

Other elements in 8uec:

The structure of Structure of Trek-1CG*:CAT335A also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Cadmium (Cd) 3 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Structure of Trek-1CG*:CAT335A (pdb code 8uec). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the Structure of Trek-1CG*:CAT335A, PDB code: 8uec:
Jump to Potassium binding site number: 1; 2; 3; 4; 5;

Potassium binding site 1 out of 5 in 8uec

Go back to Potassium Binding Sites List in 8uec
Potassium binding site 1 out of 5 in the Structure of Trek-1CG*:CAT335A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of Trek-1CG*:CAT335A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K407

b:84.2
occ:1.00
O A:GLY144 2.6 92.4 1.0
O B:GLY144 2.7 84.1 1.0
O A:ILE252 2.7 72.9 1.0
O B:ILE252 2.7 70.1 1.0
O B:ILE143 2.8 88.9 1.0
O A:GLY253 2.8 72.5 1.0
O B:GLY253 2.9 81.0 1.0
K A:K408 2.9 81.7 1.0
C A:GLY144 3.2 84.6 1.0
CA A:GLY144 3.4 72.5 1.0
N A:GLY144 3.5 77.2 1.0
K A:K409 3.5 98.0 1.0
C B:GLY144 3.6 88.4 1.0
C A:GLY253 3.6 78.0 1.0
C B:GLY253 3.8 89.3 1.0
C B:ILE143 3.9 75.6 1.0
C A:ILE252 3.9 78.1 1.0
C B:ILE252 3.9 77.5 1.0
CA B:GLY144 4.0 81.9 1.0
CA A:GLY253 4.1 69.0 1.0
N A:PHE145 4.3 90.6 1.0
CA B:GLY253 4.3 84.8 1.0
N B:GLY144 4.4 74.9 1.0
N A:GLY253 4.4 78.7 1.0
O B:THR142 4.6 81.8 1.0
N B:GLY253 4.6 82.5 1.0
N A:PHE254 4.6 80.9 1.0
N B:PHE145 4.7 90.7 1.0
C A:ILE143 4.7 81.9 1.0
N B:PHE254 4.8 106.1 1.0
O A:THR142 4.8 91.1 1.0
CA A:PHE145 4.9 82.2 1.0
CA A:PHE254 5.0 84.0 1.0

Potassium binding site 2 out of 5 in 8uec

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Potassium binding site 2 out of 5 in the Structure of Trek-1CG*:CAT335A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of Trek-1CG*:CAT335A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K408

b:81.7
occ:1.00
O B:ILE252 2.6 70.1 1.0
O B:THR142 2.7 81.8 1.0
O A:ILE252 2.7 72.9 1.0
O A:THR251 2.7 68.6 1.0
O B:THR251 2.8 77.5 1.0
O A:THR142 2.8 91.1 1.0
K A:K407 2.9 84.2 1.0
O B:ILE143 3.0 88.9 1.0
N A:GLY144 3.3 77.2 1.0
K B:K406 3.4 77.9 1.0
C B:ILE252 3.5 77.5 1.0
C A:ILE252 3.6 78.1 1.0
C B:ILE143 3.7 75.6 1.0
C B:THR142 3.9 76.4 1.0
CA B:ILE252 3.9 80.0 1.0
C A:THR251 3.9 73.5 1.0
C A:THR142 3.9 86.8 1.0
C B:THR251 3.9 80.4 1.0
CA A:GLY144 4.0 72.5 1.0
CA B:ILE143 4.1 83.4 1.0
CA A:ILE252 4.2 69.6 1.0
C A:ILE143 4.2 81.9 1.0
CA A:ILE143 4.2 81.1 1.0
N B:ILE252 4.4 78.3 1.0
N B:ILE143 4.5 81.5 1.0
N A:ILE143 4.5 85.8 1.0
N A:ILE252 4.5 67.0 1.0
CG2 A:THR142 4.6 87.4 1.0
N A:GLY253 4.6 78.7 1.0
N B:GLY144 4.6 74.9 1.0
N B:GLY253 4.6 82.5 1.0
C A:GLY144 4.8 84.6 1.0
O A:GLY144 4.9 92.4 1.0
CA A:GLY253 4.9 69.0 1.0
O A:GLY253 5.0 72.5 1.0
O B:GLY144 5.0 84.1 1.0
O B:GLY253 5.0 81.0 1.0

Potassium binding site 3 out of 5 in 8uec

Go back to Potassium Binding Sites List in 8uec
Potassium binding site 3 out of 5 in the Structure of Trek-1CG*:CAT335A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structure of Trek-1CG*:CAT335A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K409

b:98.0
occ:1.00
O A:GLY144 2.5 92.4 1.0
O B:PHE254 2.7 99.3 1.0
O A:PHE145 2.8 83.2 1.0
O A:PHE254 2.8 94.8 1.0
O B:PHE145 3.1 100.4 1.0
O A:GLY253 3.1 72.5 1.0
O B:GLY253 3.2 81.0 1.0
C A:PHE145 3.2 82.7 1.0
O B:GLY144 3.4 84.1 1.0
K A:K407 3.5 84.2 1.0
C B:PHE254 3.6 99.9 1.0
C A:PHE254 3.6 95.4 1.0
C A:GLY144 3.6 84.6 1.0
C B:PHE145 3.8 98.3 1.0
CA A:PHE145 3.9 82.2 1.0
N A:GLY146 3.9 81.9 1.0
CA B:PHE254 4.1 92.5 1.0
CA A:GLY146 4.1 89.5 1.0
CA A:PHE254 4.2 84.0 1.0
N A:PHE145 4.2 90.6 1.0
C A:GLY253 4.3 78.0 1.0
C B:GLY253 4.3 89.3 1.0
N A:GLY255 4.5 98.1 1.0
C B:GLY144 4.5 88.4 1.0
N B:GLY146 4.5 94.5 1.0
N B:GLY255 4.6 92.9 1.0
CA B:PHE145 4.6 88.0 1.0
CA B:GLY146 4.6 91.4 1.0
N B:PHE254 4.7 106.1 1.0
N A:PHE254 4.7 80.9 1.0
CA A:GLY255 4.8 89.7 1.0
CA A:GLY144 4.8 72.5 1.0

Potassium binding site 4 out of 5 in 8uec

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Potassium binding site 4 out of 5 in the Structure of Trek-1CG*:CAT335A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Structure of Trek-1CG*:CAT335A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K406

b:77.9
occ:1.00
O B:THR251 2.7 77.5 1.0
OG1 B:THR142 2.8 84.9 1.0
CG2 A:THR142 3.0 87.4 1.0
O A:THR251 3.0 68.6 1.0
OG1 B:THR251 3.0 66.5 1.0
O B:THR142 3.2 81.8 1.0
CB B:THR251 3.3 73.1 1.0
CB B:THR142 3.3 63.6 1.0
OG1 A:THR251 3.4 81.0 1.0
K A:K408 3.4 81.7 1.0
C B:THR251 3.6 80.4 1.0
CB A:THR251 3.6 87.2 1.0
C B:THR142 3.7 76.4 1.0
CB A:THR142 3.7 79.6 1.0
O A:THR142 3.8 91.1 1.0
C A:THR251 3.9 73.5 1.0
CA B:THR251 4.1 82.1 1.0
CA B:THR142 4.2 74.9 1.0
C A:THR142 4.3 86.8 1.0
N B:ILE143 4.4 81.5 1.0
CA A:THR251 4.4 78.5 1.0
CG2 B:THR251 4.6 86.6 1.0
N B:ILE252 4.6 78.3 1.0
CG2 B:THR142 4.6 63.7 1.0
CA A:THR142 4.7 83.7 1.0
O B:THR250 4.8 74.6 1.0
CG2 A:THR251 4.8 83.7 1.0
OG1 A:THR142 4.8 83.3 1.0
CA B:ILE143 4.8 83.4 1.0
O B:THR141 4.8 82.5 1.0
N A:ILE252 4.9 67.0 1.0
CA B:ILE252 4.9 80.0 1.0

Potassium binding site 5 out of 5 in 8uec

Go back to Potassium Binding Sites List in 8uec
Potassium binding site 5 out of 5 in the Structure of Trek-1CG*:CAT335A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Structure of Trek-1CG*:CAT335A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K407

b:144.0
occ:1.00
O B:GLY146 4.0 102.1 1.0
C B:GLY146 4.4 98.7 1.0
CA B:ASN147 4.7 107.3 1.0
N B:ASN147 4.7 107.8 1.0
O B:PHE145 4.8 100.4 1.0
O B:PHE254 4.8 99.3 1.0
O A:PHE254 4.9 94.8 1.0

Reference:

A.Mondal, H.Lee, D.L.Minor. Structure of Trek-1(S131C Mutant) with ML335 To Be Published.
Page generated: Tue Aug 13 01:08:32 2024

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