Potassium in PDB 8ue9: Structure of Trek-1CG*:CAT335
Protein crystallography data
The structure of Structure of Trek-1CG*:CAT335, PDB code: 8ue9
was solved by
A.Mondal,
H.Lee,
D.L.Minor,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.62 /
3.00
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
67.069,
119.776,
129.708,
90,
90,
90
|
R / Rfree (%)
|
26.8 /
30.6
|
Other elements in 8ue9:
The structure of Structure of Trek-1CG*:CAT335 also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the Structure of Trek-1CG*:CAT335
(pdb code 8ue9). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the
Structure of Trek-1CG*:CAT335, PDB code: 8ue9:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
Potassium binding site 1 out
of 5 in 8ue9
Go back to
Potassium Binding Sites List in 8ue9
Potassium binding site 1 out
of 5 in the Structure of Trek-1CG*:CAT335
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Structure of Trek-1CG*:CAT335 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K605
b:88.4
occ:1.00
|
O
|
B:THR251
|
2.9
|
88.0
|
1.0
|
OG1
|
A:THR142
|
2.9
|
110.4
|
1.0
|
OG1
|
B:THR251
|
2.9
|
92.9
|
1.0
|
OG1
|
A:THR251
|
2.9
|
92.2
|
1.0
|
O
|
A:THR251
|
2.9
|
84.6
|
1.0
|
OG1
|
B:THR142
|
2.9
|
95.5
|
1.0
|
O
|
A:THR142
|
3.2
|
115.0
|
1.0
|
O
|
B:THR142
|
3.3
|
89.6
|
1.0
|
CB
|
A:THR142
|
3.3
|
81.0
|
1.0
|
CB
|
A:THR251
|
3.4
|
83.4
|
1.0
|
CB
|
B:THR251
|
3.4
|
81.6
|
1.0
|
CB
|
B:THR142
|
3.4
|
66.0
|
1.0
|
K
|
A:K608
|
3.6
|
102.5
|
1.0
|
C
|
B:THR251
|
3.8
|
86.0
|
1.0
|
C
|
A:THR251
|
3.8
|
85.3
|
1.0
|
C
|
A:THR142
|
4.0
|
106.6
|
1.0
|
C
|
B:THR142
|
4.0
|
83.2
|
1.0
|
CA
|
A:THR251
|
4.2
|
83.4
|
1.0
|
CA
|
B:THR251
|
4.2
|
102.4
|
1.0
|
CA
|
A:THR142
|
4.3
|
88.3
|
1.0
|
CA
|
B:THR142
|
4.4
|
93.3
|
1.0
|
CG2
|
A:THR142
|
4.4
|
83.9
|
1.0
|
CG2
|
B:THR142
|
4.5
|
83.1
|
1.0
|
CG2
|
A:THR251
|
4.6
|
99.8
|
1.0
|
CG2
|
B:THR251
|
4.6
|
86.3
|
1.0
|
K
|
A:K609
|
4.8
|
140.7
|
1.0
|
N
|
B:ILE252
|
4.8
|
98.8
|
1.0
|
O
|
B:THR250
|
4.9
|
98.2
|
1.0
|
N
|
A:ILE252
|
4.9
|
81.1
|
1.0
|
O
|
A:THR250
|
4.9
|
113.1
|
1.0
|
|
Potassium binding site 2 out
of 5 in 8ue9
Go back to
Potassium Binding Sites List in 8ue9
Potassium binding site 2 out
of 5 in the Structure of Trek-1CG*:CAT335
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Structure of Trek-1CG*:CAT335 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K606
b:103.2
occ:1.00
|
O
|
A:PHE254
|
2.8
|
105.9
|
1.0
|
O
|
B:PHE254
|
2.8
|
90.8
|
1.0
|
O
|
A:PHE145
|
2.9
|
102.4
|
1.0
|
O
|
B:GLY144
|
2.9
|
104.1
|
1.0
|
O
|
B:PHE145
|
2.9
|
110.5
|
1.0
|
O
|
A:GLY144
|
3.0
|
103.2
|
1.0
|
O
|
A:GLY253
|
3.1
|
91.0
|
1.0
|
O
|
B:GLY253
|
3.2
|
94.4
|
1.0
|
C
|
B:PHE145
|
3.4
|
108.5
|
1.0
|
C
|
A:PHE145
|
3.4
|
95.4
|
1.0
|
K
|
A:K607
|
3.6
|
95.1
|
1.0
|
C
|
A:PHE254
|
3.6
|
95.7
|
1.0
|
C
|
B:PHE254
|
3.6
|
111.9
|
1.0
|
C
|
B:GLY144
|
4.0
|
100.6
|
1.0
|
CA
|
A:PHE145
|
4.0
|
91.5
|
1.0
|
CA
|
B:PHE145
|
4.1
|
97.0
|
1.0
|
C
|
A:GLY144
|
4.1
|
101.3
|
1.0
|
N
|
B:GLY146
|
4.1
|
112.4
|
1.0
|
CA
|
A:PHE254
|
4.1
|
89.9
|
1.0
|
N
|
A:GLY146
|
4.2
|
99.8
|
1.0
|
CA
|
B:PHE254
|
4.2
|
109.5
|
1.0
|
C
|
A:GLY253
|
4.2
|
85.0
|
1.0
|
CA
|
B:GLY146
|
4.3
|
94.5
|
1.0
|
C
|
B:GLY253
|
4.3
|
94.9
|
1.0
|
CA
|
A:GLY146
|
4.4
|
105.3
|
1.0
|
N
|
A:GLY255
|
4.5
|
94.8
|
1.0
|
N
|
B:GLY255
|
4.5
|
110.2
|
1.0
|
N
|
B:PHE145
|
4.5
|
103.6
|
1.0
|
N
|
A:PHE145
|
4.6
|
103.3
|
1.0
|
N
|
A:PHE254
|
4.7
|
85.1
|
1.0
|
N
|
B:PHE254
|
4.8
|
131.6
|
1.0
|
CA
|
A:GLY255
|
4.9
|
97.4
|
1.0
|
CA
|
B:GLY255
|
4.9
|
93.5
|
1.0
|
|
Potassium binding site 3 out
of 5 in 8ue9
Go back to
Potassium Binding Sites List in 8ue9
Potassium binding site 3 out
of 5 in the Structure of Trek-1CG*:CAT335
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Structure of Trek-1CG*:CAT335 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K607
b:95.1
occ:1.00
|
O
|
B:GLY144
|
2.7
|
104.1
|
1.0
|
O
|
A:GLY144
|
2.7
|
103.2
|
1.0
|
O
|
A:ILE252
|
2.7
|
82.7
|
1.0
|
O
|
A:GLY253
|
2.7
|
91.0
|
1.0
|
O
|
B:GLY253
|
2.8
|
94.4
|
1.0
|
K
|
A:K608
|
2.8
|
102.5
|
1.0
|
O
|
B:ILE252
|
2.8
|
93.5
|
1.0
|
C
|
B:GLY144
|
3.4
|
100.6
|
1.0
|
C
|
A:GLY144
|
3.4
|
101.3
|
1.0
|
K
|
A:K606
|
3.6
|
103.2
|
1.0
|
C
|
A:GLY253
|
3.6
|
85.0
|
1.0
|
C
|
B:GLY253
|
3.7
|
94.9
|
1.0
|
N
|
B:GLY144
|
3.7
|
90.3
|
1.0
|
CA
|
B:GLY144
|
3.7
|
95.7
|
1.0
|
N
|
A:GLY144
|
3.7
|
91.8
|
1.0
|
CA
|
A:GLY144
|
3.8
|
81.3
|
1.0
|
C
|
A:ILE252
|
3.9
|
91.2
|
1.0
|
C
|
B:ILE252
|
3.9
|
85.4
|
1.0
|
CA
|
A:GLY253
|
4.0
|
88.7
|
1.0
|
CA
|
B:GLY253
|
4.1
|
113.0
|
1.0
|
N
|
A:PHE145
|
4.4
|
103.3
|
1.0
|
N
|
A:GLY253
|
4.4
|
88.4
|
1.0
|
N
|
B:PHE145
|
4.4
|
103.6
|
1.0
|
N
|
B:GLY253
|
4.5
|
102.6
|
1.0
|
C
|
A:ILE143
|
4.6
|
104.8
|
1.0
|
C
|
B:ILE143
|
4.6
|
99.6
|
1.0
|
N
|
A:PHE254
|
4.6
|
85.1
|
1.0
|
N
|
B:PHE254
|
4.7
|
131.6
|
1.0
|
O
|
B:THR142
|
4.7
|
89.6
|
1.0
|
O
|
A:THR142
|
4.8
|
115.0
|
1.0
|
CA
|
A:PHE145
|
4.8
|
91.5
|
1.0
|
CA
|
B:PHE145
|
4.9
|
97.0
|
1.0
|
O
|
A:THR251
|
5.0
|
84.6
|
1.0
|
|
Potassium binding site 4 out
of 5 in 8ue9
Go back to
Potassium Binding Sites List in 8ue9
Potassium binding site 4 out
of 5 in the Structure of Trek-1CG*:CAT335
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Structure of Trek-1CG*:CAT335 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K608
b:102.5
occ:1.00
|
O
|
A:THR142
|
2.6
|
115.0
|
1.0
|
O
|
A:THR251
|
2.7
|
84.6
|
1.0
|
O
|
B:THR142
|
2.7
|
89.6
|
1.0
|
K
|
A:K607
|
2.8
|
95.1
|
1.0
|
O
|
B:ILE252
|
2.8
|
93.5
|
1.0
|
O
|
A:ILE252
|
2.8
|
82.7
|
1.0
|
O
|
B:THR251
|
2.8
|
88.0
|
1.0
|
C
|
A:ILE252
|
3.5
|
91.2
|
1.0
|
C
|
B:ILE252
|
3.6
|
85.4
|
1.0
|
K
|
A:K605
|
3.6
|
88.4
|
1.0
|
N
|
A:GLY144
|
3.7
|
91.8
|
1.0
|
N
|
B:GLY144
|
3.8
|
90.3
|
1.0
|
C
|
A:THR251
|
3.8
|
85.3
|
1.0
|
C
|
A:THR142
|
3.8
|
106.6
|
1.0
|
C
|
B:THR142
|
3.9
|
83.2
|
1.0
|
C
|
B:THR251
|
4.0
|
86.0
|
1.0
|
CA
|
A:ILE252
|
4.1
|
73.8
|
1.0
|
CA
|
B:ILE252
|
4.1
|
98.0
|
1.0
|
CA
|
A:ILE143
|
4.2
|
99.9
|
1.0
|
C
|
A:ILE143
|
4.4
|
104.8
|
1.0
|
CA
|
B:ILE143
|
4.4
|
91.0
|
1.0
|
N
|
A:ILE252
|
4.4
|
81.1
|
1.0
|
N
|
A:GLY253
|
4.5
|
88.4
|
1.0
|
N
|
A:ILE143
|
4.5
|
99.8
|
1.0
|
N
|
B:ILE252
|
4.5
|
98.8
|
1.0
|
C
|
B:ILE143
|
4.5
|
99.6
|
1.0
|
CA
|
A:GLY144
|
4.5
|
81.3
|
1.0
|
N
|
B:GLY253
|
4.6
|
102.6
|
1.0
|
CA
|
B:GLY144
|
4.6
|
95.7
|
1.0
|
N
|
B:ILE143
|
4.6
|
88.6
|
1.0
|
CA
|
A:GLY253
|
4.8
|
88.7
|
1.0
|
O
|
A:GLY253
|
4.8
|
91.0
|
1.0
|
O
|
B:GLY253
|
4.8
|
94.4
|
1.0
|
O
|
A:GLY144
|
4.9
|
103.2
|
1.0
|
CA
|
B:GLY253
|
4.9
|
113.0
|
1.0
|
O
|
B:GLY144
|
4.9
|
104.1
|
1.0
|
CA
|
A:THR142
|
4.9
|
88.3
|
1.0
|
CA
|
A:THR251
|
5.0
|
83.4
|
1.0
|
C
|
A:GLY144
|
5.0
|
101.3
|
1.0
|
CA
|
B:THR142
|
5.0
|
93.3
|
1.0
|
|
Potassium binding site 5 out
of 5 in 8ue9
Go back to
Potassium Binding Sites List in 8ue9
Potassium binding site 5 out
of 5 in the Structure of Trek-1CG*:CAT335
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Structure of Trek-1CG*:CAT335 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K609
b:140.7
occ:1.00
|
OG1
|
A:THR142
|
4.4
|
110.4
|
1.0
|
OG1
|
A:THR251
|
4.5
|
92.2
|
1.0
|
OG1
|
B:THR251
|
4.7
|
92.9
|
1.0
|
K
|
A:K605
|
4.8
|
88.4
|
1.0
|
|
Reference:
A.Mondal,
H.Lee,
D.L.Minor.
Structure of Trek-1(S131C Mutant) with ML335 To Be Published.
Page generated: Tue Aug 13 01:05:32 2024
|