Atomistry » Potassium » PDB 8rgt-8tjj » 8tjj
Atomistry »
  Potassium »
    PDB 8rgt-8tjj »
      8tjj »

Potassium in PDB 8tjj: Sam-Dependent Methyltransferase Redm Bound to Sam

Protein crystallography data

The structure of Sam-Dependent Methyltransferase Redm Bound to Sam, PDB code: 8tjj was solved by P.Daniel-Ivad, K.S.Ryan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.64 / 1.82
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 113.86, 58.78, 113.92, 90, 103.11, 90
R / Rfree (%) 17.5 / 21.8

Other elements in 8tjj:

The structure of Sam-Dependent Methyltransferase Redm Bound to Sam also contains other interesting chemical elements:

Sodium (Na) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Sam-Dependent Methyltransferase Redm Bound to Sam (pdb code 8tjj). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Sam-Dependent Methyltransferase Redm Bound to Sam, PDB code: 8tjj:

Potassium binding site 1 out of 1 in 8tjj

Go back to Potassium Binding Sites List in 8tjj
Potassium binding site 1 out of 1 in the Sam-Dependent Methyltransferase Redm Bound to Sam


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Sam-Dependent Methyltransferase Redm Bound to Sam within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K402

b:64.8
occ:1.00
O C:HOH754 3.5 39.9 1.0
OD1 D:ASP148 3.7 34.2 1.0
OD1 C:ASP148 3.7 34.1 1.0
O D:HOH553 4.1 45.4 1.0
O C:PRO147 4.3 16.7 1.0
O D:PRO147 4.4 20.8 1.0
CB C:ASP151 4.5 19.4 1.0
C C:PRO147 4.5 21.3 1.0
CB D:PRO147 4.5 18.5 1.0
C D:PRO147 4.6 21.8 1.0
CB D:ASP151 4.6 23.1 1.0
N C:ASP148 4.7 19.4 1.0
CB C:PRO147 4.7 19.9 1.0
CA C:ASP148 4.7 20.4 1.0
CG C:ASP151 4.7 28.1 1.0
N D:ASP148 4.7 21.4 1.0
CA D:ASP148 4.8 22.8 1.0
CG C:ASP148 4.9 30.3 1.0
CG D:ASP151 4.9 25.7 1.0
CG D:ASP148 4.9 32.4 1.0
OD2 C:ASP151 5.0 36.0 1.0

Reference:

P.Daniel-Ivad, K.S.Ryan. Structure of Methyltransferase Redm That Forms the Dimethylpyrrolinium of the Bisindole Reductasporine. J.Biol.Chem. 05520 2023.
ISSN: ESSN 1083-351X
PubMed: 38042494
DOI: 10.1016/J.JBC.2023.105520
Page generated: Tue Aug 13 01:00:10 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy