Potassium in PDB 8t8t: Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group

The structure of Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group, PDB code: 8t8t was solved by G.Lam, L.A.Yatsunyk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.96 / 1.62
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	29.624, 51.923, 88.064, 90, 90, 90
R / Rfree (%)	20.7 / 22.8

The binding sites of Potassium atom in the Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group (pdb code 8t8t). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group, PDB code: 8t8t:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in the Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ A:K101 b:25.4 occ:1.00 O2 A:DT15 2.7 30.7 1.0 O6 A:DG16 2.7 26.3 1.0 O2 A:DT14 2.8 29.2 1.0 O6 A:DG13 2.8 25.2 1.0 O6 A:DG4 2.9 19.6 1.0 O6 A:DG25 2.9 28.1 1.0 C2 A:DT15 3.3 32.8 1.0 C6 A:DG16 3.6 29.1 1.0 C6 A:DG13 3.6 26.0 1.0 K A:K102 3.6 24.7 1.0 C2 A:DT14 3.7 30.5 1.0 C6 A:DG25 3.7 27.7 1.0 C6 A:DG4 3.8 23.6 1.0 N3 A:DT14 3.9 28.0 1.0 O4' A:DT15 3.9 34.2 1.0 N1 A:DG16 3.9 24.8 1.0 N3 A:DT15 3.9 26.8 1.0 N1 A:DG4 4.0 19.6 1.0 N1 A:DG13 4.0 26.1 1.0 N1 A:DG25 4.1 24.2 1.0 N1 A:DT15 4.1 33.4 1.0 C1' A:DT15 4.3 32.7 1.0 C5 A:DG13 4.6 26.6 1.0 C5 A:DG16 4.8 25.3 1.0 C5 A:DG25 4.8 27.8 1.0 N1 A:DT14 5.0 28.6 1.0

Potassium binding site 2 out of 6 in the Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ A:K102 b:24.7 occ:1.00 O6 A:DG5 2.5 24.1 1.0 O6 A:DG12 2.6 24.6 1.0 O6 A:DG24 2.6 25.6 1.0 O6 A:DG17 2.7 26.1 1.0 O6 A:DG16 2.8 26.3 1.0 O6 A:DG13 2.9 25.2 1.0 O6 A:DG25 3.0 28.1 1.0 O6 A:DG4 3.0 19.6 1.0 O A:HOH203 3.1 30.8 1.0 C6 A:DG12 3.4 27.5 1.0 C6 A:DG5 3.5 19.7 1.0 C6 A:DG24 3.5 24.2 1.0 K A:K101 3.6 25.4 1.0 C6 A:DG17 3.6 26.4 1.0 N1 A:DG5 3.7 21.2 1.0 C6 A:DG16 3.7 29.1 1.0 C6 A:DG4 3.7 23.6 1.0 N1 A:DG12 3.8 23.3 1.0 C6 A:DG13 3.8 26.0 1.0 C6 A:DG25 3.8 27.7 1.0 N1 A:DG24 3.8 21.4 1.0 N1 A:DG17 3.9 27.9 1.0 N1 A:DG25 4.0 24.2 1.0 N1 A:DG13 4.1 26.1 1.0 N1 A:DG4 4.1 19.6 1.0 N1 A:DG16 4.1 24.8 1.0 C5 A:DG12 4.6 23.8 1.0 C5 A:DG24 4.8 24.8 1.0 C5 A:DG5 4.8 23.9 1.0 C5 A:DG4 4.8 21.4 1.0 C5 A:DG16 4.9 25.3 1.0 C5 A:DG17 4.9 26.4 1.0

Potassium binding site 3 out of 6 in the Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ A:K103 b:23.4 occ:1.00 O6 A:DG11 2.7 25.6 1.0 O6 A:DG18 2.7 26.7 1.0 O6 A:DG23 2.7 27.7 1.0 O6 A:DG6 2.7 20.0 1.0 O6 A:DG10 2.8 30.4 1.0 O6 A:DG19 2.8 26.8 1.0 O6 A:DG22 2.8 26.7 1.0 O6 A:DG7 2.9 23.9 1.0 C6 A:DG6 3.5 24.8 1.0 C6 A:DG18 3.5 30.7 1.0 C6 A:DG11 3.6 25.8 1.0 C6 A:DG10 3.6 27.1 1.0 C6 A:DG23 3.6 25.7 1.0 C6 A:DG22 3.7 24.2 1.0 C6 A:DG19 3.7 26.5 1.0 N1 A:DG6 3.8 20.7 1.0 C6 A:DG7 3.8 27.8 1.0 N1 A:DG18 3.8 25.8 1.0 N1 A:DG11 3.9 26.7 1.0 N1 A:DG10 3.9 27.0 1.0 O A:HOH202 3.9 29.3 1.0 N1 A:DG23 3.9 23.8 1.0 N1 A:DG19 3.9 25.8 1.0 N1 A:DG22 4.0 25.3 1.0 N1 A:DG7 4.1 25.4 1.0 C5 A:DG18 4.7 29.1 1.0 C5 A:DG6 4.7 25.2 1.0 C5 A:DG22 4.8 25.2 1.0 C5 A:DG10 4.8 25.3 1.0 C5 A:DG11 4.9 25.9 1.0 C5 A:DG23 4.9 22.8 1.0 C2 A:DG6 5.0 25.1 1.0

Potassium binding site 4 out of 6 in the Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ B:K101 b:20.0 occ:1.00 O6 B:DG16 2.6 26.6 1.0 O6 B:DG13 2.7 22.5 1.0 O2 B:DT14 2.7 24.5 1.0 O2 B:DT15 2.8 24.0 1.0 O6 B:DG4 2.9 19.9 1.0 O6 B:DG25 3.0 21.3 1.0 C2 B:DT15 3.3 23.3 1.0 C6 B:DG13 3.4 24.3 1.0 C6 B:DG16 3.6 26.1 1.0 K B:K102 3.6 18.6 1.0 C2 B:DT14 3.6 25.8 1.0 C6 B:DG4 3.7 21.3 1.0 N1 B:DG13 3.8 22.3 1.0 C6 B:DG25 3.8 19.4 1.0 N3 B:DT14 3.8 23.4 1.0 N1 B:DG4 3.9 21.3 1.0 N3 B:DT15 3.9 26.7 1.0 N1 B:DG16 3.9 21.2 1.0 O4' B:DT15 4.0 26.4 1.0 N1 B:DT15 4.1 25.6 1.0 N1 B:DG25 4.1 18.6 1.0 C1' B:DT15 4.3 27.3 1.0 C5 B:DG13 4.5 24.8 1.0 C5 B:DG16 4.7 25.6 1.0 N1 B:DT14 4.9 27.1 1.0 C5 B:DG25 4.9 26.0 1.0 C2 B:DG13 5.0 27.4 1.0

Potassium binding site 5 out of 6 in the Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ B:K102 b:18.6 occ:1.00 O6 B:DG5 2.6 21.6 1.0 O6 B:DG24 2.7 21.2 1.0 O6 B:DG17 2.7 23.5 1.0 O6 B:DG4 2.7 19.9 1.0 O6 B:DG16 2.8 26.6 1.0 O6 B:DG12 2.8 24.4 1.0 O6 B:DG25 2.8 21.3 1.0 O6 B:DG13 3.1 22.5 1.0 C6 B:DG5 3.5 20.6 1.0 C6 B:DG24 3.5 23.2 1.0 C6 B:DG4 3.5 21.3 1.0 C6 B:DG12 3.6 24.6 1.0 K B:K101 3.6 20.0 1.0 C6 B:DG17 3.6 23.3 1.0 C6 B:DG25 3.7 19.4 1.0 C6 B:DG16 3.7 26.1 1.0 N1 B:DG5 3.8 22.5 1.0 N1 B:DG25 3.8 18.6 1.0 N1 B:DG24 3.8 21.7 1.0 N1 B:DG12 3.8 19.6 1.0 N1 B:DG17 3.9 25.6 1.0 C6 B:DG13 3.9 24.3 1.0 N1 B:DG4 4.0 21.3 1.0 N1 B:DG13 4.0 22.3 1.0 N1 B:DG16 4.1 21.2 1.0 C5 B:DG4 4.6 19.1 1.0 C5 B:DG12 4.8 24.5 1.0 C5 B:DG24 4.8 22.3 1.0 C5 B:DG5 4.8 20.4 1.0 C5 B:DG16 4.8 25.6 1.0 C5 B:DG17 4.9 26.1 1.0 C5 B:DG25 4.9 26.0 1.0

Potassium binding site 6 out of 6 in the Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ B:K103 b:27.5 occ:1.00 O6 B:DG18 2.6 28.5 1.0 O6 B:DG22 2.6 30.3 1.0 O6 B:DG19 2.6 30.4 1.0 O6 B:DG6 2.7 25.6 1.0 O6 B:DG23 2.7 26.9 1.0 O6 B:DG10 2.8 30.3 1.0 O6 B:DG7 2.8 27.4 1.0 O6 B:DG11 2.8 25.1 1.0 C6 B:DG18 3.4 29.4 1.0 C6 B:DG22 3.4 29.5 1.0 C6 B:DG6 3.6 25.0 1.0 C6 B:DG19 3.6 32.5 1.0 C6 B:DG10 3.6 27.8 1.0 C6 B:DG23 3.7 27.2 1.0 N1 B:DG18 3.7 28.8 1.0 C6 B:DG11 3.7 25.6 1.0 N1 B:DG22 3.8 32.2 1.0 C6 B:DG7 3.8 27.1 1.0 N1 B:DG19 3.8 31.2 1.0 N1 B:DG6 3.9 24.1 1.0 N1 B:DG23 3.9 24.6 1.0 N1 B:DG11 4.0 27.5 1.0 N1 B:DG10 4.0 26.0 1.0 N1 B:DG7 4.1 23.1 1.0 C5 B:DG18 4.6 29.7 1.0 C5 B:DG22 4.6 27.6 1.0 C5 B:DG6 4.7 23.7 1.0 C5 B:DG10 4.7 28.6 1.0 C5 B:DG19 4.9 35.4 1.0 C5 B:DG23 5.0 27.1 1.0

G.Lam, L.A.Yatunsyk. Crystal Structure of TET25 in Complex with PYDH2 Ligand in P212121 Space Group To Be Published.