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Potassium in PDB 8qxt: Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation

Enzymatic activity of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation

All present enzymatic activity of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation:
5.6.1.7;

Other elements in 8qxt:

The structure of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation also contains other interesting chemical elements:

Fluorine (F) 21 atoms
Magnesium (Mg) 14 atoms

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Potassium atom in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation (pdb code 8qxt). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 14 binding sites of Potassium where determined in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation, PDB code: 8qxt:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 14 in 8qxt

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Potassium binding site 1 out of 14 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1603

b:13.2
occ:1.00
 O A:HOH2005 2.8 18.6 1.0
O A:LYS51 2.8 37.9 1.0
F3 A:BEF1602 2.9 16.3 1.0
OG1 A:THR90 2.9 11.1 1.0
O A:THR30 2.9 24.0 1.0
OG1 A:THR30 3.0 24.0 1.0
O1A A:ADP1600 3.0 16.4 1.0
O3A A:ADP1600 3.6 16.4 1.0
C A:THR30 3.7 24.0 1.0
CB A:THR30 3.8 24.0 1.0
CB A:THR90 3.9 11.1 1.0
PA A:ADP1600 3.9 16.4 1.0
C A:LYS51 4.0 37.9 1.0
N A:GLY53 4.1 16.6 1.0
O3B A:ADP1600 4.1 16.4 1.0
BE A:BEF1602 4.1 16.3 1.0
F1 A:BEF1602 4.3 16.3 1.0
CG2 A:THR90 4.3 11.1 1.0
CA A:ASP52 4.4 20.4 1.0
CA A:THR30 4.4 24.0 1.0
NZ A:LYS51 4.5 37.9 1.0
C A:ASP52 4.5 20.4 1.0
N A:LEU31 4.5 37.9 1.0
CA A:LEU31 4.6 37.9 1.0
PB A:ADP1600 4.6 16.4 1.0
N A:ASP52 4.7 20.4 1.0
CG A:LYS51 4.7 37.9 1.0
CA A:GLY53 4.7 16.6 1.0
O2A A:ADP1600 4.9 16.4 1.0

Potassium binding site 2 out of 14 in 8qxt

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Potassium binding site 2 out of 14 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K1603

b:17.9
occ:1.00
 O B:LYS51 2.8 37.9 1.0
O B:THR30 2.9 37.9 1.0
OG1 B:THR90 2.9 16.1 1.0
OG1 B:THR30 3.0 37.9 1.0
F3 B:BEF1602 3.0 16.4 1.0
O1A B:ADP1600 3.1 14.5 1.0
O3A B:ADP1600 3.7 14.5 1.0
C B:THR30 3.7 37.9 1.0
O B:HOH2005 3.7 19.0 1.0
CB B:THR30 3.8 37.9 1.0
CB B:THR90 3.9 16.1 1.0
C B:LYS51 3.9 37.9 1.0
PA B:ADP1600 3.9 14.5 1.0
N B:GLY53 4.1 15.1 1.0
O3B B:ADP1600 4.1 14.5 1.0
BE B:BEF1602 4.2 16.4 1.0
F1 B:BEF1602 4.2 16.4 1.0
CG2 B:THR90 4.3 16.1 1.0
CA B:ASP52 4.4 18.7 1.0
CA B:THR30 4.4 37.9 1.0
C B:ASP52 4.5 18.7 1.0
N B:LEU31 4.5 37.9 1.0
N B:ASP52 4.6 18.7 1.0
CA B:LEU31 4.6 37.9 1.0
NZ B:LYS51 4.6 37.9 1.0
PB B:ADP1600 4.6 14.5 1.0
CG B:LYS51 4.7 37.9 1.0
CA B:GLY53 4.7 15.1 1.0
O2A B:ADP1600 4.9 14.5 1.0
CA B:LYS51 5.0 37.9 1.0

Potassium binding site 3 out of 14 in 8qxt

Go back to Potassium Binding Sites List in 8qxt
Potassium binding site 3 out of 14 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1603

b:20.6
occ:1.00
 O C:LYS51 2.7 37.9 1.0
O C:THR30 2.8 37.9 1.0
F3 C:BEF1602 2.9 24.5 1.0
O1A C:ADP1600 2.9 37.9 1.0
OG1 C:THR30 3.1 37.9 1.0
O C:HOH2005 3.2 21.6 1.0
OG1 C:THR90 3.2 14.5 1.0
C C:THR30 3.7 37.9 1.0
O3A C:ADP1600 3.7 37.9 1.0
CB C:THR30 3.7 37.9 1.0
C C:LYS51 3.9 37.9 1.0
PA C:ADP1600 3.9 37.9 1.0
NZ C:LYS51 4.1 37.9 1.0
BE C:BEF1602 4.2 24.5 1.0
CB C:THR90 4.2 14.5 1.0
O3B C:ADP1600 4.3 37.9 1.0
N C:GLY53 4.3 16.6 1.0
F1 C:BEF1602 4.3 24.5 1.0
CA C:THR30 4.4 37.9 1.0
CG C:LYS51 4.4 37.9 1.0
CA C:ASP52 4.5 22.6 1.0
N C:LEU31 4.5 24.1 1.0
CG2 C:THR90 4.6 14.5 1.0
CA C:LEU31 4.6 24.1 1.0
N C:ASP52 4.6 22.6 1.0
C C:ASP52 4.6 22.6 1.0
PB C:ADP1600 4.7 37.9 1.0
O2A C:ADP1600 4.8 37.9 1.0
CA C:LYS51 4.9 37.9 1.0
CB C:LYS51 5.0 37.9 1.0

Potassium binding site 4 out of 14 in 8qxt

Go back to Potassium Binding Sites List in 8qxt
Potassium binding site 4 out of 14 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K1603

b:15.8
occ:1.00
 O D:LYS51 2.7 37.9 1.0
O1A D:ADP1600 2.8 15.0 1.0
O D:THR30 2.9 37.9 1.0
F3 D:BEF1602 3.0 14.1 1.0
OG1 D:THR90 3.0 12.2 1.0
OG1 D:THR30 3.0 37.9 1.0
O D:HOH2006 3.5 16.9 1.0
CB D:THR30 3.7 37.9 1.0
C D:THR30 3.7 37.9 1.0
C D:LYS51 3.9 37.9 1.0
O3A D:ADP1600 3.9 15.0 1.0
PA D:ADP1600 3.9 15.0 1.0
CB D:THR90 4.1 12.2 1.0
N D:GLY53 4.1 15.6 1.0
O3B D:ADP1600 4.2 15.0 1.0
BE D:BEF1602 4.2 14.1 1.0
NZ D:LYS51 4.3 37.9 1.0
CA D:ASP52 4.3 18.6 1.0
F1 D:BEF1602 4.3 14.1 1.0
CA D:THR30 4.4 37.9 1.0
CG2 D:THR90 4.5 12.2 1.0
C D:ASP52 4.5 18.6 1.0
N D:LEU31 4.5 23.0 1.0
N D:ASP52 4.5 18.6 1.0
CG D:LYS51 4.6 37.9 1.0
CA D:LEU31 4.6 23.0 1.0
CA D:GLY53 4.7 15.6 1.0
O2A D:ADP1600 4.8 15.0 1.0
PB D:ADP1600 4.8 15.0 1.0
CA D:LYS51 4.9 37.9 1.0
CG2 D:THR30 5.0 37.9 1.0

Potassium binding site 5 out of 14 in 8qxt

Go back to Potassium Binding Sites List in 8qxt
Potassium binding site 5 out of 14 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K1603

b:16.8
occ:1.00
 O E:LYS51 2.7 37.9 1.0
O1A E:ADP1600 2.8 16.8 1.0
O E:THR30 3.0 37.9 1.0
OG1 E:THR30 3.0 37.9 1.0
F3 E:BEF1602 3.1 17.7 1.0
OG1 E:THR90 3.1 10.9 1.0
O E:HOH2005 3.2 15.7 1.0
CB E:THR30 3.7 37.9 1.0
C E:THR30 3.7 37.9 1.0
O3A E:ADP1600 3.7 16.8 1.0
PA E:ADP1600 3.8 16.8 1.0
C E:LYS51 3.8 37.9 1.0
CB E:THR90 4.1 10.9 1.0
O3B E:ADP1600 4.2 16.8 1.0
N E:GLY53 4.2 14.1 1.0
NZ E:LYS51 4.2 37.9 1.0
BE E:BEF1602 4.3 17.7 1.0
F1 E:BEF1602 4.4 17.7 1.0
CA E:THR30 4.4 37.9 1.0
CA E:ASP52 4.4 17.0 1.0
CG2 E:THR90 4.5 10.9 1.0
CG E:LYS51 4.5 37.9 1.0
N E:LEU31 4.5 20.2 1.0
C E:ASP52 4.5 17.0 1.0
N E:ASP52 4.5 17.0 1.0
CA E:LEU31 4.6 20.2 1.0
O2A E:ADP1600 4.6 16.8 1.0
PB E:ADP1600 4.7 16.8 1.0
CA E:LYS51 4.9 37.9 1.0
CA E:GLY53 4.9 14.1 1.0
CG2 E:THR30 5.0 37.9 1.0

Potassium binding site 6 out of 14 in 8qxt

Go back to Potassium Binding Sites List in 8qxt
Potassium binding site 6 out of 14 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K1603

b:23.6
occ:1.00
 O F:LYS51 2.8 37.9 1.0
O F:THR30 2.8 37.9 1.0
O1A F:ADP1600 2.8 37.9 1.0
F3 F:BEF1602 2.9 27.7 1.0
OG1 F:THR90 3.1 17.6 1.0
OG1 F:THR30 3.2 37.9 1.0
O F:HOH1705 3.6 19.8 1.0
O3A F:ADP1600 3.6 37.9 1.0
C F:THR30 3.7 37.9 1.0
PA F:ADP1600 3.8 37.9 1.0
CB F:THR30 3.8 37.9 1.0
C F:LYS51 4.0 37.9 1.0
CB F:THR90 4.1 17.6 1.0
BE F:BEF1602 4.1 27.7 1.0
O3B F:ADP1600 4.2 37.9 1.0
NZ F:LYS51 4.2 37.9 1.0
N F:GLY53 4.3 16.3 1.0
F1 F:BEF1602 4.3 27.7 1.0
CA F:THR30 4.4 37.9 1.0
CG F:LYS51 4.5 37.9 1.0
N F:LEU31 4.5 24.1 1.0
CG2 F:THR90 4.5 17.6 1.0
CA F:LEU31 4.5 24.1 1.0
CA F:ASP52 4.6 20.9 1.0
PB F:ADP1600 4.6 37.9 1.0
C F:ASP52 4.7 20.9 1.0
O2A F:ADP1600 4.7 37.9 1.0
N F:ASP52 4.7 20.9 1.0
CA F:GLY53 5.0 16.3 1.0
CA F:LYS51 5.0 37.9 1.0

Potassium binding site 7 out of 14 in 8qxt

Go back to Potassium Binding Sites List in 8qxt
Potassium binding site 7 out of 14 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K1603

b:16.8
occ:1.00
 O1A G:ADP1600 2.7 18.5 1.0
O G:LYS51 2.8 37.9 1.0
O G:THR30 2.8 37.9 1.0
F3 G:BEF1602 3.1 21.6 1.0
OG1 G:THR90 3.1 16.3 1.0
OG1 G:THR30 3.1 37.9 1.0
O G:HOH2005 3.3 19.2 1.0
O3A G:ADP1600 3.7 18.5 1.0
C G:THR30 3.7 37.9 1.0
PA G:ADP1600 3.7 18.5 1.0
CB G:THR30 3.8 37.9 1.0
C G:LYS51 3.9 37.9 1.0
CB G:THR90 4.1 16.3 1.0
F1 G:BEF1602 4.1 21.6 1.0
O3B G:ADP1600 4.2 18.5 1.0
BE G:BEF1602 4.2 21.6 1.0
N G:GLY53 4.2 14.7 1.0
CA G:THR30 4.4 37.9 1.0
NZ G:LYS51 4.4 37.9 1.0
CA G:ASP52 4.4 19.4 1.0
CG2 G:THR90 4.4 16.3 1.0
N G:LEU31 4.5 37.9 1.0
CG G:LYS51 4.5 37.9 1.0
CA G:LEU31 4.6 37.9 1.0
O2A G:ADP1600 4.6 18.5 1.0
C G:ASP52 4.6 19.4 1.0
N G:ASP52 4.6 19.4 1.0
PB G:ADP1600 4.7 18.5 1.0
CA G:GLY53 4.9 14.7 1.0
CA G:LYS51 5.0 37.9 1.0
O5' G:ADP1600 5.0 18.5 1.0

Potassium binding site 8 out of 14 in 8qxt

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Potassium binding site 8 out of 14 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K603

b:41.4
occ:1.00
 O H:THR30 2.8 21.0 1.0
O H:LYS51 2.9 28.0 1.0
O H:GLY32 3.1 22.7 1.0
O1A H:ADP601 3.3 37.9 1.0
C H:THR30 4.1 21.0 1.0
C H:LYS51 4.1 28.0 1.0
C H:GLY32 4.3 22.7 1.0
N H:GLY32 4.4 22.7 1.0
CB H:LYS51 4.5 28.0 1.0
PA H:ADP601 4.7 37.9 1.0
CB H:THR30 4.8 21.0 1.0
CA H:THR30 4.9 21.0 1.0
C H:LEU31 4.9 22.2 1.0
CA H:LYS51 4.9 28.0 1.0
CA H:ASP52 4.9 26.6 1.0
N H:ASP52 4.9 26.6 1.0
N H:GLY35 5.0 23.5 1.0
N H:LEU31 5.0 22.2 1.0
CA H:GLY32 5.0 22.7 1.0

Potassium binding site 9 out of 14 in 8qxt

Go back to Potassium Binding Sites List in 8qxt
Potassium binding site 9 out of 14 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
I:K603

b:41.3
occ:1.00
 O I:THR30 2.8 22.3 1.0
O I:LYS51 3.0 24.0 1.0
O I:GLY32 3.1 23.4 1.0
O1A I:ADP601 3.3 37.9 1.0
C I:THR30 4.1 22.3 1.0
C I:LYS51 4.2 24.0 1.0
C I:GLY32 4.3 23.4 1.0
N I:GLY32 4.5 23.4 1.0
PA I:ADP601 4.7 37.9 1.0
CB I:LYS51 4.7 24.0 1.0
CB I:THR30 4.7 22.3 1.0
CA I:THR30 4.9 22.3 1.0
C I:LEU31 4.9 21.6 1.0
N I:LEU31 5.0 21.6 1.0

Potassium binding site 10 out of 14 in 8qxt

Go back to Potassium Binding Sites List in 8qxt
Potassium binding site 10 out of 14 in the Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Cryoem Structure of A GROEL14-GROES7 Complex in Presence of Adp-Befx with Narrow GROEL7 Trans Ring Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
J:K603

b:44.3
occ:1.00
 O J:THR30 2.8 18.6 1.0
O J:LYS51 3.1 25.6 1.0
O J:GLY32 3.1 20.0 1.0
O1A J:ADP601 3.1 33.7 1.0
C J:THR30 4.1 18.6 1.0
C J:LYS51 4.3 25.6 1.0
C J:GLY32 4.3 20.0 1.0
N J:GLY32 4.3 20.0 1.0
PA J:ADP601 4.5 33.7 1.0
CB J:LYS51 4.8 25.6 1.0
C J:LEU31 4.8 21.9 1.0
CB J:THR30 4.8 18.6 1.0
CA J:LEU31 4.9 21.9 1.0
CA J:THR30 4.9 18.6 1.0
CA J:GLY32 4.9 20.0 1.0
N J:LEU31 4.9 21.9 1.0
CA J:ASP52 5.0 29.9 1.0

Reference:

J.Wagner, A.I.Caravajal, F.Beck, A.Bracher, W.Wan, S.Bohn, R.Koerner, W.Baumeister, R.Fernandez-Busnadiego, F.U.Hartl. Visualizing Chaperonin Function in Situ By Cryo-Electron Tomography Nature 2024.
ISSN: ESSN 1476-4687
Page generated: Tue Aug 13 00:34:15 2024

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