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Potassium in PDB 8p4o: Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx

Enzymatic activity of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx

All present enzymatic activity of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx:
2.5.1.6; 5.6.1.7;

Other elements in 8p4o:

The structure of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx also contains other interesting chemical elements:

Fluorine (F) 21 atoms
Magnesium (Mg) 7 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx (pdb code 8p4o). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx, PDB code: 8p4o:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in 8p4o

Go back to Potassium Binding Sites List in 8p4o
Potassium binding site 1 out of 7 in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1603

b:29.4
occ:1.00
 O A:THR30 2.8 21.7 1.0
O A:LYS51 2.8 24.2 1.0
F3 A:BEF1602 2.9 30.4 1.0
O1A A:ADP1600 2.9 21.7 1.0
O3A A:ADP1600 3.0 21.7 1.0
PA A:ADP1600 3.3 21.7 1.0
O2A A:ADP1600 3.7 21.7 1.0
OG1 A:THR90 3.8 22.7 1.0
OG1 A:THR30 3.9 21.7 1.0
NZ A:LYS51 4.0 24.2 1.0
BE A:BEF1602 4.0 30.4 1.0
C A:LYS51 4.0 24.2 1.0
C A:THR30 4.0 21.7 1.0
F1 A:BEF1602 4.1 30.4 1.0
O3B A:ADP1600 4.1 21.7 1.0
PB A:ADP1600 4.2 21.7 1.0
CB A:THR30 4.4 21.7 1.0
CG A:LYS51 4.4 24.2 1.0
F2 A:BEF1602 4.5 30.4 1.0
N A:GLY53 4.5 25.9 1.0
CA A:ASP52 4.6 29.2 1.0
CB A:THR90 4.7 22.7 1.0
O A:HOH1703 4.7 24.7 1.0
N A:ASP52 4.8 29.2 1.0
CB A:LYS51 4.8 24.2 1.0
O5' A:ADP1600 4.8 21.7 1.0
O2B A:ADP1600 4.9 21.7 1.0
CA A:THR30 4.9 21.7 1.0
C A:ASP52 4.9 29.2 1.0
N A:LEU31 5.0 23.3 1.0
CA A:LYS51 5.0 24.2 1.0

Potassium binding site 2 out of 7 in 8p4o

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Potassium binding site 2 out of 7 in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K1603

b:36.5
occ:1.00
 O B:THR30 2.8 22.4 1.0
F3 B:BEF1602 2.8 29.9 1.0
O B:LYS51 2.9 23.2 1.0
O3A B:ADP1600 3.0 23.0 1.0
O1A B:ADP1600 3.1 23.0 1.0
OG1 B:THR90 3.4 23.5 1.0
PA B:ADP1600 3.5 23.0 1.0
OG1 B:THR30 3.5 22.4 1.0
F1 B:BEF1602 3.9 29.9 1.0
O3B B:ADP1600 3.9 23.0 1.0
BE B:BEF1602 3.9 29.9 1.0
C B:THR30 4.0 22.4 1.0
O2A B:ADP1600 4.0 23.0 1.0
C B:LYS51 4.1 23.2 1.0
N B:GLY53 4.2 27.2 1.0
PB B:ADP1600 4.2 23.0 1.0
CB B:THR30 4.2 22.4 1.0
CB B:THR90 4.3 23.5 1.0
CA B:ASP52 4.5 30.9 1.0
C B:ASP52 4.6 30.9 1.0
MG B:MG1601 4.7 30.2 1.0
CE B:LYS51 4.7 23.2 1.0
CA B:THR30 4.8 22.4 1.0
N B:ASP52 4.8 30.9 1.0
CG B:LYS51 4.8 23.2 1.0
CD B:LYS51 4.9 23.2 1.0
N B:LEU31 4.9 23.3 1.0
CG2 B:THR90 4.9 23.5 1.0
O5' B:ADP1600 5.0 23.0 1.0
CA B:LEU31 5.0 23.3 1.0
O2B B:ADP1600 5.0 23.0 1.0

Potassium binding site 3 out of 7 in 8p4o

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Potassium binding site 3 out of 7 in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1603

b:33.6
occ:1.00
 F3 C:BEF1602 2.8 38.4 1.0
O C:THR30 2.8 23.9 1.0
O C:LYS51 2.8 25.9 1.0
OG1 C:THR90 2.9 27.5 1.0
OG1 C:THR30 3.1 23.9 1.0
O3A C:ADP1600 3.3 51.5 1.0
O1A C:ADP1600 3.4 51.5 1.0
N C:GLY53 3.8 27.8 1.0
C C:THR30 3.8 23.9 1.0
O3B C:ADP1600 3.9 51.5 1.0
CB C:THR90 3.9 27.5 1.0
PA C:ADP1600 3.9 51.5 1.0
CB C:THR30 3.9 23.9 1.0
C C:LYS51 4.0 25.9 1.0
BE C:BEF1602 4.1 38.4 1.0
CA C:ASP52 4.3 29.2 1.0
C C:ASP52 4.3 29.2 1.0
PB C:ADP1600 4.3 51.5 1.0
F1 C:BEF1602 4.4 38.4 1.0
CG C:LYS51 4.5 25.9 1.0
CG2 C:THR90 4.5 27.5 1.0
CA C:GLY53 4.5 27.8 1.0
CA C:THR30 4.5 23.9 1.0
O2A C:ADP1600 4.6 51.5 1.0
N C:ASP52 4.6 29.2 1.0
N C:LEU31 4.7 27.9 1.0
CA C:LEU31 4.9 27.9 1.0

Potassium binding site 4 out of 7 in 8p4o

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Potassium binding site 4 out of 7 in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K1603

b:37.0
occ:1.00
 O D:LYS51 2.8 27.1 1.0
O D:THR30 2.8 25.4 1.0
F3 D:BEF1602 2.8 41.0 1.0
O3A D:ADP1600 3.3 51.5 1.0
O1A D:ADP1600 3.3 51.5 1.0
OG1 D:THR90 3.4 27.9 1.0
OG1 D:THR30 3.5 25.4 1.0
PA D:ADP1600 3.8 51.5 1.0
C D:LYS51 3.9 27.1 1.0
C D:THR30 4.0 25.4 1.0
N D:GLY53 4.0 30.1 1.0
BE D:BEF1602 4.0 41.0 1.0
F1 D:BEF1602 4.1 41.0 1.0
O3B D:ADP1600 4.1 51.5 1.0
CB D:THR30 4.2 25.4 1.0
CA D:ASP52 4.2 33.5 1.0
O2A D:ADP1600 4.3 51.5 1.0
CG D:LYS51 4.4 27.1 1.0
CB D:THR90 4.4 27.9 1.0
C D:ASP52 4.4 33.5 1.0
PB D:ADP1600 4.4 51.5 1.0
N D:ASP52 4.5 33.5 1.0
CE D:LYS51 4.7 27.1 1.0
F2 D:BEF1602 4.8 41.0 1.0
CA D:THR30 4.8 25.4 1.0
CD D:LYS51 4.8 27.1 1.0
CA D:GLY53 4.8 30.1 1.0
CB D:LYS51 4.9 27.1 1.0
CA D:LYS51 5.0 27.1 1.0
CG2 D:THR90 5.0 27.9 1.0
N D:LEU31 5.0 28.2 1.0
OD1 D:ASP52 5.0 33.5 1.0

Potassium binding site 5 out of 7 in 8p4o

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Potassium binding site 5 out of 7 in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K1603

b:39.3
occ:1.00
 O E:LYS51 2.8 27.4 1.0
O E:THR30 2.8 24.1 1.0
F3 E:BEF1602 2.8 39.7 1.0
O1A E:ADP1600 3.1 51.5 1.0
O3A E:ADP1600 3.1 51.5 1.0
OG1 E:THR90 3.2 27.3 1.0
PA E:ADP1600 3.6 51.5 1.0
OG1 E:THR30 3.7 24.1 1.0
C E:LYS51 4.0 27.4 1.0
C E:THR30 4.0 24.1 1.0
BE E:BEF1602 4.0 39.7 1.0
O3B E:ADP1600 4.0 51.5 1.0
F1 E:BEF1602 4.1 39.7 1.0
N E:GLY53 4.2 28.2 1.0
CB E:THR90 4.2 27.3 1.0
O2A E:ADP1600 4.3 51.5 1.0
CA E:ASP52 4.3 32.0 1.0
CB E:THR30 4.3 24.1 1.0
PB E:ADP1600 4.3 51.5 1.0
C E:ASP52 4.4 32.0 1.0
NZ E:LYS51 4.5 27.4 1.0
N E:ASP52 4.6 32.0 1.0
F2 E:BEF1602 4.7 39.7 1.0
CG E:LYS51 4.8 27.4 1.0
CG2 E:THR90 4.8 27.3 1.0
CA E:THR30 4.8 24.1 1.0
N E:LEU31 4.9 26.9 1.0
CA E:GLY53 4.9 28.2 1.0
CA E:LEU31 5.0 26.9 1.0

Potassium binding site 6 out of 7 in 8p4o

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Potassium binding site 6 out of 7 in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K1603

b:39.2
occ:1.00
 O F:THR30 2.8 22.5 1.0
F3 F:BEF1602 2.8 40.8 1.0
O F:LYS51 2.9 24.4 1.0
O3A F:ADP1600 3.0 51.5 1.0
O1A F:ADP1600 3.1 51.5 1.0
OG1 F:THR90 3.3 28.1 1.0
PA F:ADP1600 3.4 51.5 1.0
OG1 F:THR30 3.8 22.5 1.0
C F:THR30 3.9 22.5 1.0
O2A F:ADP1600 4.0 51.5 1.0
O3B F:ADP1600 4.0 51.5 1.0
F1 F:BEF1602 4.0 40.8 1.0
BE F:BEF1602 4.0 40.8 1.0
C F:LYS51 4.0 24.4 1.0
CB F:THR90 4.2 28.1 1.0
PB F:ADP1600 4.2 51.5 1.0
CB F:THR30 4.2 22.5 1.0
N F:GLY53 4.3 28.0 1.0
CA F:ASP52 4.4 32.2 1.0
CG F:LYS51 4.6 24.4 1.0
N F:ASP52 4.7 32.2 1.0
C F:ASP52 4.7 32.2 1.0
MG F:MG1601 4.7 42.8 1.0
CA F:THR30 4.8 22.5 1.0
CG2 F:THR90 4.8 28.1 1.0
F2 F:BEF1602 4.8 40.8 1.0
N F:LEU31 4.8 27.5 1.0
CA F:LEU31 4.9 27.5 1.0
O5' F:ADP1600 4.9 51.5 1.0
O2B F:ADP1600 5.0 51.5 1.0

Potassium binding site 7 out of 7 in 8p4o

Go back to Potassium Binding Sites List in 8p4o
Potassium binding site 7 out of 7 in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Ordered Substrate Metk in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K1603

b:39.3
occ:1.00
 O G:THR30 2.8 25.3 1.0
O G:LYS51 2.9 25.2 1.0
O1A G:ADP1600 3.0 51.5 1.0
F3 G:BEF1602 3.0 41.0 1.0
O3A G:ADP1600 3.0 51.5 1.0
OG1 G:THR90 3.4 27.2 1.0
PA G:ADP1600 3.4 51.5 1.0
OG1 G:THR30 3.8 25.3 1.0
O3B G:ADP1600 3.9 51.5 1.0
F1 G:BEF1602 3.9 41.0 1.0
C G:THR30 3.9 25.3 1.0
BE G:BEF1602 4.0 41.0 1.0
O2A G:ADP1600 4.0 51.5 1.0
C G:LYS51 4.1 25.2 1.0
PB G:ADP1600 4.2 51.5 1.0
CB G:THR30 4.2 25.3 1.0
N G:GLY53 4.3 27.2 1.0
CB G:THR90 4.3 27.2 1.0
NZ G:LYS51 4.3 25.2 1.0
CA G:ASP52 4.5 31.7 1.0
CG G:LYS51 4.5 25.2 1.0
F2 G:BEF1602 4.6 41.0 1.0
C G:ASP52 4.7 31.7 1.0
CA G:THR30 4.8 25.3 1.0
N G:ASP52 4.8 31.7 1.0
N G:LEU31 4.8 23.2 1.0
CA G:LEU31 4.8 23.2 1.0
CG2 G:THR90 4.9 27.2 1.0
O5' G:ADP1600 4.9 51.5 1.0
O2B G:ADP1600 5.0 51.5 1.0

Reference:

J.Wagner, A.I.Caravajal, F.Beck, A.Bracher, W.Wan, S.Bohn, R.Koerner, W.Baumeister, R.Fernandez-Busnadiego, F.U.Hartl. Visualizing Chaperonin Function in Situ By Cryo-Electron Tomography Nature 2024.
ISSN: ESSN 1476-4687
Page generated: Tue Aug 13 00:22:25 2024

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