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Potassium in PDB 8p4n: Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx

Enzymatic activity of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx

All present enzymatic activity of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx:
5.6.1.7;

Other elements in 8p4n:

The structure of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx also contains other interesting chemical elements:

Fluorine (F) 21 atoms
Magnesium (Mg) 7 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx (pdb code 8p4n). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx, PDB code: 8p4n:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in 8p4n

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Potassium binding site 1 out of 7 in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1603

b:5.8
occ:1.00
 O A:LYS51 2.7 2.5 1.0
F3 A:BEF1602 2.8 4.0 1.0
O A:THR30 2.8 22.0 1.0
OG1 A:THR90 2.9 4.8 1.0
O1A A:ADP1600 3.1 5.9 1.0
OG1 A:THR30 3.2 22.0 1.0
O3A A:ADP1600 3.5 5.9 1.0
O3B A:ADP1600 3.8 5.9 1.0
C A:THR30 3.8 22.0 1.0
O A:HOH2017 3.9 7.3 1.0
CB A:THR90 3.9 4.8 1.0
CB A:THR30 3.9 22.0 1.0
C A:LYS51 3.9 2.5 1.0
PA A:ADP1600 3.9 5.9 1.0
N A:GLY53 3.9 5.2 1.0
BE A:BEF1602 4.2 4.0 1.0
CA A:ASP52 4.3 5.8 1.0
CG2 A:THR90 4.3 4.8 1.0
PB A:ADP1600 4.4 5.9 1.0
C A:ASP52 4.4 5.8 1.0
F1 A:BEF1602 4.5 4.0 1.0
CA A:THR30 4.5 22.0 1.0
N A:ASP52 4.5 5.8 1.0
CA A:GLY53 4.6 5.2 1.0
NZ A:LYS51 4.7 2.5 1.0
N A:LEU31 4.7 22.0 1.0
CG A:LYS51 4.7 2.5 1.0
CA A:LEU31 4.7 22.0 1.0
O2A A:ADP1600 4.8 5.9 1.0

Potassium binding site 2 out of 7 in 8p4n

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Potassium binding site 2 out of 7 in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K1603

b:5.2
occ:1.00
 O B:THR30 2.7 2.2 1.0
O1A B:ADP1600 2.8 22.0 1.0
O B:LYS51 2.8 3.1 1.0
F3 B:BEF1602 2.8 10.8 1.0
OG1 B:THR90 3.0 4.5 1.0
O3A B:ADP1600 3.3 22.0 1.0
OG1 B:THR30 3.4 2.2 1.0
PA B:ADP1600 3.5 22.0 1.0
C B:THR30 3.7 2.2 1.0
O3B B:ADP1600 3.9 22.0 1.0
O B:HOH1717 3.9 8.3 1.0
C B:LYS51 4.0 3.1 1.0
CB B:THR90 4.0 4.5 1.0
CB B:THR30 4.0 2.2 1.0
BE B:BEF1602 4.1 10.8 1.0
F1 B:BEF1602 4.1 10.8 1.0
N B:GLY53 4.2 5.7 1.0
O2A B:ADP1600 4.3 22.0 1.0
PB B:ADP1600 4.4 22.0 1.0
CA B:ASP52 4.5 6.3 1.0
NZ B:LYS51 4.5 3.1 1.0
CG2 B:THR90 4.5 4.5 1.0
CG B:LYS51 4.5 3.1 1.0
CA B:THR30 4.6 2.2 1.0
CA B:LEU31 4.6 22.0 1.0
N B:LEU31 4.6 22.0 1.0
C B:ASP52 4.6 6.3 1.0
N B:ASP52 4.7 6.3 1.0
CA B:GLY53 4.8 5.7 1.0
O5' B:ADP1600 4.9 22.0 1.0
O B:HOH1715 4.9 17.3 1.0

Potassium binding site 3 out of 7 in 8p4n

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Potassium binding site 3 out of 7 in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1603

b:6.2
occ:1.00
 O C:LYS51 2.7 5.0 1.0
O C:THR30 2.7 3.7 1.0
O1A C:ADP1600 3.0 22.0 1.0
F3 C:BEF1602 3.0 11.0 1.0
OG1 C:THR90 3.2 5.3 1.0
O3A C:ADP1600 3.3 22.0 1.0
O C:HOH2017 3.5 9.1 1.0
PA C:ADP1600 3.6 22.0 1.0
OG1 C:THR30 3.7 3.7 1.0
C C:THR30 3.9 3.7 1.0
O3B C:ADP1600 3.9 22.0 1.0
C C:LYS51 3.9 5.0 1.0
CB C:THR30 4.1 3.7 1.0
F1 C:BEF1602 4.1 11.0 1.0
BE C:BEF1602 4.2 11.0 1.0
CB C:THR90 4.2 5.3 1.0
NZ C:LYS51 4.3 5.0 1.0
N C:GLY53 4.3 6.5 1.0
PB C:ADP1600 4.3 22.0 1.0
O2A C:ADP1600 4.4 22.0 1.0
CA C:ASP52 4.4 7.0 1.0
O C:HOH2013 4.5 17.2 1.0
CG C:LYS51 4.5 5.0 1.0
N C:ASP52 4.7 7.0 1.0
CA C:THR30 4.7 3.7 1.0
C C:ASP52 4.7 7.0 1.0
CG2 C:THR90 4.7 5.3 1.0
CA C:LEU31 4.7 6.0 1.0
N C:LEU31 4.7 6.0 1.0
F2 C:BEF1602 4.9 11.0 1.0
CA C:GLY53 5.0 6.5 1.0

Potassium binding site 4 out of 7 in 8p4n

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Potassium binding site 4 out of 7 in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K1603

b:3.3
occ:1.00
 O D:LYS51 2.8 3.5 1.0
O D:THR30 2.8 4.5 1.0
O1A D:ADP1600 2.8 5.3 1.0
F3 D:BEF1602 2.8 3.6 1.0
OG1 D:THR90 3.0 5.4 1.0
O D:HOH2016 3.4 5.8 1.0
OG1 D:THR30 3.5 4.5 1.0
O3A D:ADP1600 3.5 5.3 1.0
PA D:ADP1600 3.7 5.3 1.0
O3B D:ADP1600 3.7 5.3 1.0
C D:THR30 3.8 4.5 1.0
C D:LYS51 4.0 3.5 1.0
CB D:THR30 4.0 4.5 1.0
CB D:THR90 4.0 5.4 1.0
BE D:BEF1602 4.0 3.6 1.0
F1 D:BEF1602 4.0 3.6 1.0
NZ D:LYS51 4.2 3.5 1.0
N D:GLY53 4.2 5.0 1.0
PB D:ADP1600 4.3 5.3 1.0
O2A D:ADP1600 4.5 5.3 1.0
CG D:LYS51 4.5 3.5 1.0
CG2 D:THR90 4.5 5.4 1.0
CA D:THR30 4.6 4.5 1.0
CA D:ASP52 4.6 4.5 1.0
N D:LEU31 4.7 4.2 1.0
CA D:LEU31 4.7 4.2 1.0
C D:ASP52 4.7 4.5 1.0
N D:ASP52 4.7 4.5 1.0
CA D:GLY53 4.9 5.0 1.0
O5' D:ADP1600 5.0 5.3 1.0
CA D:LYS51 5.0 3.5 1.0

Potassium binding site 5 out of 7 in 8p4n

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Potassium binding site 5 out of 7 in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K1603

b:3.0
occ:1.00
 O E:LYS51 2.7 3.4 1.0
O E:THR30 2.8 1.9 1.0
O1A E:ADP1600 2.9 4.2 1.0
OG1 E:THR90 3.0 2.4 1.0
F3 E:BEF1602 3.2 2.3 1.0
OG1 E:THR30 3.2 1.9 1.0
O3A E:ADP1600 3.5 4.2 1.0
C E:THR30 3.6 1.9 1.0
PA E:ADP1600 3.7 4.2 1.0
CB E:THR30 3.8 1.9 1.0
C E:LYS51 3.9 3.4 1.0
CB E:THR90 4.0 2.4 1.0
O3B E:ADP1600 4.1 4.2 1.0
N E:GLY53 4.1 4.5 1.0
O E:HOH2018 4.2 6.4 1.0
CG2 E:THR90 4.4 2.4 1.0
CA E:THR30 4.4 1.9 1.0
N E:LEU31 4.4 2.4 1.0
BE E:BEF1602 4.4 2.3 1.0
NZ E:LYS51 4.5 3.4 1.0
CA E:LEU31 4.5 2.4 1.0
CA E:ASP52 4.5 4.6 1.0
CG E:LYS51 4.5 3.4 1.0
PB E:ADP1600 4.5 4.2 1.0
F1 E:BEF1602 4.6 2.3 1.0
C E:ASP52 4.6 4.6 1.0
N E:ASP52 4.7 4.6 1.0
O2A E:ADP1600 4.7 4.2 1.0
CA E:GLY53 4.8 4.5 1.0
CA E:LYS51 4.9 3.4 1.0
O5' E:ADP1600 5.0 4.2 1.0

Potassium binding site 6 out of 7 in 8p4n

Go back to Potassium Binding Sites List in 8p4n
Potassium binding site 6 out of 7 in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K1603

b:4.9
occ:1.00
 O F:THR30 2.7 3.7 1.0
O F:LYS51 2.7 3.0 1.0
O1A F:ADP1600 2.9 6.3 1.0
F3 F:BEF1602 2.9 4.1 1.0
OG1 F:THR90 3.0 5.9 1.0
OG1 F:THR30 3.3 3.7 1.0
O3A F:ADP1600 3.4 6.3 1.0
PA F:ADP1600 3.6 6.3 1.0
O F:HOH2017 3.7 8.2 1.0
C F:THR30 3.8 3.7 1.0
O3B F:ADP1600 3.9 6.3 1.0
CB F:THR90 3.9 5.9 1.0
C F:LYS51 4.0 3.0 1.0
CB F:THR30 4.0 3.7 1.0
F1 F:BEF1602 4.1 4.1 1.0
BE F:BEF1602 4.1 4.1 1.0
N F:GLY53 4.2 4.7 1.0
PB F:ADP1600 4.4 6.3 1.0
O2A F:ADP1600 4.4 6.3 1.0
CG2 F:THR90 4.4 5.9 1.0
NZ F:LYS51 4.5 3.0 1.0
CG F:LYS51 4.5 3.0 1.0
CA F:ASP52 4.5 5.2 1.0
CA F:THR30 4.6 3.7 1.0
C F:ASP52 4.6 5.2 1.0
N F:LEU31 4.7 22.0 1.0
CA F:LEU31 4.7 22.0 1.0
N F:ASP52 4.7 5.2 1.0
O F:HOH2019 4.7 12.2 1.0
CA F:GLY53 4.9 4.7 1.0
CA F:LYS51 5.0 3.0 1.0
O5' F:ADP1600 5.0 6.3 1.0

Potassium binding site 7 out of 7 in 8p4n

Go back to Potassium Binding Sites List in 8p4n
Potassium binding site 7 out of 7 in the Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Cryoem Structure of A GROEL7-GROES7 Cage with Encapsulated Disordered Substrate Metk in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K1603

b:5.3
occ:1.00
 F3 G:BEF1602 2.7 6.9 1.0
O G:THR30 2.7 22.0 1.0
O G:LYS51 2.8 4.2 1.0
OG1 G:THR90 2.8 4.9 1.0
O1A G:ADP1600 2.9 8.5 1.0
OG1 G:THR30 3.2 22.0 1.0
O3A G:ADP1600 3.4 8.5 1.0
PA G:ADP1600 3.7 8.5 1.0
C G:THR30 3.8 22.0 1.0
CB G:THR90 3.8 4.9 1.0
O G:HOH2019 3.9 9.7 1.0
CB G:THR30 3.9 22.0 1.0
C G:LYS51 4.0 4.2 1.0
O3B G:ADP1600 4.0 8.5 1.0
N G:GLY53 4.1 6.8 1.0
BE G:BEF1602 4.1 6.9 1.0
F1 G:BEF1602 4.3 6.9 1.0
CG2 G:THR90 4.3 4.9 1.0
CA G:ASP52 4.4 8.8 1.0
O2A G:ADP1600 4.5 8.5 1.0
PB G:ADP1600 4.5 8.5 1.0
CA G:THR30 4.5 22.0 1.0
NZ G:LYS51 4.6 4.2 1.0
C G:ASP52 4.6 8.8 1.0
CG G:LYS51 4.6 4.2 1.0
N G:LEU31 4.6 22.0 1.0
N G:ASP52 4.7 8.8 1.0
CA G:LEU31 4.7 22.0 1.0
CA G:GLY53 4.7 6.8 1.0
F2 G:BEF1602 5.0 6.9 1.0
O5' G:ADP1600 5.0 8.5 1.0

Reference:

J.Wagner, A.I.Caravajal, F.Beck, A.Bracher, W.Wan, S.Bohn, R.Koerner, W.Baumeister, R.Fernandez-Busnadiego, F.U.Hartl. Visualizing Chaperonin Function in Situ By Cryo-Electron Tomography Nature 2024.
ISSN: ESSN 1476-4687
Page generated: Tue Aug 13 00:21:52 2024

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