Atomistry » Potassium » PDB 8jxp-8q0j » 8p02
Atomistry »
  Potassium »
    PDB 8jxp-8q0j »
      8p02 »

Potassium in PDB 8p02: Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa

Other elements in 8p02:

The structure of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa also contains other interesting chemical elements:

Calcium (Ca) 6 atoms
Iron (Fe) 12 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa (pdb code 8p02). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa, PDB code: 8p02:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in 8p02

Go back to Potassium Binding Sites List in 8p02
Potassium binding site 1 out of 6 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K606

b:89.8
occ:1.00
 O A:ALA222 2.8 87.3 1.0
O A:ILE167 2.8 86.6 1.0
OE2 A:GLU235 2.9 91.3 1.0
O A:VAL219 2.9 86.2 1.0
O9 A:BYN602 2.9 91.5 1.0
O A:ALA220 3.4 86.2 1.0
C A:ALA222 3.5 87.3 1.0
CB A:ALA222 3.5 87.3 1.0
O5 A:BYN602 3.6 91.5 1.0
N A:ALA222 3.6 87.3 1.0
C A:ALA220 3.6 86.2 1.0
P1 A:BYN602 3.7 91.5 1.0
O7 A:BYN602 3.7 91.5 1.0
CA A:ALA222 3.7 87.3 1.0
CA A:ALA220 3.7 86.2 1.0
C A:VAL219 3.9 86.2 1.0
FE A:FE603 4.0 100.2 1.0
C A:ILE167 4.0 86.6 1.0
CD A:GLU235 4.0 91.3 1.0
O10 A:BYN602 4.1 91.5 1.0
N A:ALA220 4.3 86.2 1.0
CA A:GLY168 4.3 87.5 1.0
C A:GLY221 4.4 88.1 1.0
N A:GLY221 4.5 88.1 1.0
N A:GLY223 4.5 85.0 1.0
N A:GLY168 4.7 87.5 1.0
OE1 A:GLU235 4.8 91.3 1.0
ND1 A:HIS166 4.9 86.8 1.0
CG A:GLU235 4.9 91.3 1.0
CE1 A:HIS166 4.9 86.8 1.0
C20 A:BYN602 4.9 91.5 1.0
C22 A:BYN602 5.0 91.5 1.0
O8 A:BYN602 5.0 91.5 1.0
CB A:ALA220 5.0 86.2 1.0
CA A:GLY221 5.0 88.1 1.0

Potassium binding site 2 out of 6 in 8p02

Go back to Potassium Binding Sites List in 8p02
Potassium binding site 2 out of 6 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K606

b:90.6
occ:1.00
 O B:ALA222 2.8 87.7 1.0
O B:ILE167 2.8 88.2 1.0
OE2 B:GLU235 2.9 92.7 1.0
O B:VAL219 2.9 86.9 1.0
O9 B:BYN602 2.9 92.5 1.0
O B:ALA220 3.4 87.1 1.0
C B:ALA222 3.5 87.7 1.0
CB B:ALA222 3.5 87.7 1.0
O5 B:BYN602 3.6 92.5 1.0
N B:ALA222 3.6 87.7 1.0
C B:ALA220 3.6 87.1 1.0
P1 B:BYN602 3.7 92.5 1.0
O7 B:BYN602 3.7 92.5 1.0
CA B:ALA222 3.7 87.7 1.0
CA B:ALA220 3.7 87.1 1.0
C B:VAL219 3.9 86.9 1.0
FE B:FE603 4.0 101.0 1.0
C B:ILE167 4.0 88.2 1.0
CD B:GLU235 4.0 92.7 1.0
O10 B:BYN602 4.1 92.5 1.0
N B:ALA220 4.3 87.1 1.0
CA B:GLY168 4.3 89.7 1.0
C B:GLY221 4.4 88.5 1.0
N B:GLY221 4.5 88.5 1.0
N B:GLY223 4.5 85.1 1.0
N B:GLY168 4.7 89.7 1.0
OE1 B:GLU235 4.8 92.7 1.0
ND1 B:HIS166 4.9 88.1 1.0
CG B:GLU235 4.9 92.7 1.0
CE1 B:HIS166 4.9 88.1 1.0
C20 B:BYN602 4.9 92.5 1.0
C22 B:BYN602 5.0 92.5 1.0
O8 B:BYN602 5.0 92.5 1.0
CB B:ALA220 5.0 87.1 1.0
CA B:GLY221 5.0 88.5 1.0

Potassium binding site 3 out of 6 in 8p02

Go back to Potassium Binding Sites List in 8p02
Potassium binding site 3 out of 6 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K606

b:90.9
occ:1.00
 O C:ALA222 2.8 87.6 1.0
O C:ILE167 2.8 88.4 1.0
OE2 C:GLU235 2.9 92.9 1.0
O C:VAL219 2.9 87.1 1.0
O9 C:BYN602 2.9 92.5 1.0
O C:ALA220 3.4 87.2 1.0
C C:ALA222 3.5 87.6 1.0
CB C:ALA222 3.5 87.6 1.0
O5 C:BYN602 3.6 92.5 1.0
N C:ALA222 3.6 87.6 1.0
C C:ALA220 3.6 87.2 1.0
P1 C:BYN602 3.7 92.5 1.0
O7 C:BYN602 3.7 92.5 1.0
CA C:ALA222 3.7 87.6 1.0
CA C:ALA220 3.7 87.2 1.0
C C:VAL219 3.9 87.1 1.0
FE C:FE603 4.0 101.1 1.0
C C:ILE167 4.0 88.4 1.0
CD C:GLU235 4.0 92.9 1.0
O10 C:BYN602 4.1 92.5 1.0
N C:ALA220 4.3 87.2 1.0
CA C:GLY168 4.3 89.6 1.0
C C:GLY221 4.4 88.6 1.0
N C:GLY221 4.5 88.6 1.0
N C:GLY223 4.5 85.1 1.0
N C:GLY168 4.7 89.6 1.0
OE1 C:GLU235 4.8 92.9 1.0
ND1 C:HIS166 4.9 88.3 1.0
CG C:GLU235 4.9 92.9 1.0
CE1 C:HIS166 4.9 88.3 1.0
C20 C:BYN602 4.9 92.5 1.0
C22 C:BYN602 5.0 92.5 1.0
O8 C:BYN602 5.0 92.5 1.0
CB C:ALA220 5.0 87.2 1.0
CA C:GLY221 5.0 88.6 1.0

Potassium binding site 4 out of 6 in 8p02

Go back to Potassium Binding Sites List in 8p02
Potassium binding site 4 out of 6 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K606

b:90.0
occ:1.00
 O D:ALA222 2.8 87.1 1.0
O D:ILE167 2.8 86.7 1.0
OE2 D:GLU235 2.9 91.3 1.0
O D:VAL219 2.9 86.2 1.0
O9 D:BYN602 2.9 91.3 1.0
O D:ALA220 3.4 86.0 1.0
C D:ALA222 3.5 87.1 1.0
CB D:ALA222 3.5 87.1 1.0
N D:ALA222 3.6 87.1 1.0
O5 D:BYN602 3.6 91.3 1.0
C D:ALA220 3.6 86.0 1.0
P1 D:BYN602 3.7 91.3 1.0
O7 D:BYN602 3.7 91.3 1.0
CA D:ALA222 3.7 87.1 1.0
CA D:ALA220 3.7 86.0 1.0
C D:VAL219 3.9 86.2 1.0
FE D:FE603 4.0 100.6 1.0
C D:ILE167 4.0 86.7 1.0
CD D:GLU235 4.0 91.3 1.0
O10 D:BYN602 4.1 91.3 1.0
N D:ALA220 4.3 86.0 1.0
CA D:GLY168 4.3 87.5 1.0
C D:GLY221 4.4 88.0 1.0
N D:GLY221 4.5 88.0 1.0
N D:GLY223 4.5 84.8 1.0
N D:GLY168 4.7 87.5 1.0
OE1 D:GLU235 4.8 91.3 1.0
ND1 D:HIS166 4.9 86.8 1.0
CG D:GLU235 4.9 91.3 1.0
CE1 D:HIS166 4.9 86.8 1.0
C20 D:BYN602 4.9 91.3 1.0
C22 D:BYN602 5.0 91.3 1.0
CB D:ALA220 5.0 86.0 1.0
O8 D:BYN602 5.0 91.3 1.0
CA D:GLY221 5.0 88.0 1.0

Potassium binding site 5 out of 6 in 8p02

Go back to Potassium Binding Sites List in 8p02
Potassium binding site 5 out of 6 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K606

b:89.4
occ:1.00
 O E:ALA222 2.8 87.3 1.0
O E:ILE167 2.8 87.6 1.0
OE2 E:GLU235 2.9 91.9 1.0
O E:VAL219 2.9 86.5 1.0
O9 E:BYN602 2.9 91.7 1.0
O E:ALA220 3.4 87.1 1.0
C E:ALA222 3.5 87.3 1.0
CB E:ALA222 3.5 87.3 1.0
O5 E:BYN602 3.6 91.7 1.0
N E:ALA222 3.6 87.3 1.0
C E:ALA220 3.6 87.1 1.0
P1 E:BYN602 3.7 91.7 1.0
O7 E:BYN602 3.7 91.7 1.0
CA E:ALA222 3.7 87.3 1.0
CA E:ALA220 3.7 87.1 1.0
C E:VAL219 3.9 86.5 1.0
FE E:FE603 4.0 101.6 1.0
C E:ILE167 4.0 87.6 1.0
CD E:GLU235 4.0 91.9 1.0
O10 E:BYN602 4.1 91.7 1.0
N E:ALA220 4.3 87.1 1.0
CA E:GLY168 4.3 89.0 1.0
C E:GLY221 4.4 88.6 1.0
N E:GLY221 4.5 88.6 1.0
N E:GLY223 4.5 84.4 1.0
N E:GLY168 4.7 89.0 1.0
OE1 E:GLU235 4.8 91.9 1.0
ND1 E:HIS166 4.9 88.5 1.0
CE1 E:HIS166 4.9 88.5 1.0
CG E:GLU235 4.9 91.9 1.0
C20 E:BYN602 4.9 91.7 1.0
C22 E:BYN602 5.0 91.7 1.0
CB E:ALA220 5.0 87.1 1.0
O8 E:BYN602 5.0 91.7 1.0
CA E:GLY221 5.0 88.6 1.0

Potassium binding site 6 out of 6 in 8p02

Go back to Potassium Binding Sites List in 8p02
Potassium binding site 6 out of 6 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K606

b:89.8
occ:1.00
 O F:ALA222 2.8 87.5 1.0
O F:ILE167 2.8 87.4 1.0
OE2 F:GLU235 2.9 91.5 1.0
O F:VAL219 2.9 86.4 1.0
O9 F:BYN602 2.9 91.6 1.0
O F:ALA220 3.4 86.9 1.0
C F:ALA222 3.5 87.5 1.0
CB F:ALA222 3.5 87.5 1.0
N F:ALA222 3.6 87.5 1.0
O5 F:BYN602 3.6 91.6 1.0
C F:ALA220 3.6 86.9 1.0
P1 F:BYN602 3.7 91.6 1.0
O7 F:BYN602 3.7 91.6 1.0
CA F:ALA222 3.7 87.5 1.0
CA F:ALA220 3.7 86.9 1.0
C F:VAL219 3.9 86.4 1.0
FE F:FE603 4.0 100.8 1.0
C F:ILE167 4.0 87.4 1.0
CD F:GLU235 4.0 91.5 1.0
O10 F:BYN602 4.1 91.6 1.0
N F:ALA220 4.3 86.9 1.0
CA F:GLY168 4.3 89.0 1.0
C F:GLY221 4.4 88.6 1.0
N F:GLY221 4.5 88.6 1.0
N F:GLY223 4.5 84.7 1.0
N F:GLY168 4.7 89.0 1.0
OE1 F:GLU235 4.8 91.5 1.0
ND1 F:HIS166 4.9 88.3 1.0
CG F:GLU235 4.9 91.5 1.0
CE1 F:HIS166 4.9 88.3 1.0
C20 F:BYN602 4.9 91.6 1.0
C22 F:BYN602 5.0 91.6 1.0
CB F:ALA220 5.0 86.9 1.0
O8 F:BYN602 5.0 91.6 1.0
CA F:GLY221 5.0 88.6 1.0

Reference:

K.Kayastha, U.Ermler. Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Product, Benzoyl-Coa To Be Published.
Page generated: Tue Aug 13 00:21:40 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy