Potassium in PDB 8oz5: Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa

Other elements in 8oz5:

The structure of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa also contains other interesting chemical elements:

Calcium (Ca) 6 atoms
Iron (Fe) 12 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa (pdb code 8oz5). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa, PDB code: 8oz5:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in 8oz5

Go back to Potassium Binding Sites List in 8oz5
Potassium binding site 1 out of 6 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K605

b:64.2
occ:1.00
 O A:ALA222 2.8 65.8 1.0
O A:ILE167 2.8 64.5 1.0
OE2 A:GLU235 2.8 66.7 1.0
O9 A:BYN601 2.8 70.5 1.0
O A:VAL219 3.0 64.7 1.0
O A:ALA220 3.1 65.1 1.0
H28 A:BYN601 3.2 70.5 1.0
C A:ALA220 3.5 65.1 1.0
O5 A:BYN601 3.5 70.5 1.0
C A:ALA222 3.5 65.8 1.0
CA A:ALA220 3.5 65.1 1.0
P1 A:BYN601 3.6 70.5 1.0
O7 A:BYN601 3.7 70.5 1.0
N A:ALA222 3.7 65.8 1.0
CD A:GLU235 3.8 66.7 1.0
CB A:ALA222 3.8 65.8 1.0
CA A:ALA222 3.9 65.8 1.0
O A:HOH718 3.9 66.6 1.0
C A:ILE167 4.0 64.5 1.0
C A:VAL219 4.0 64.7 1.0
FE A:FE603 4.0 75.3 1.0
OE1 A:GLU235 4.1 66.7 1.0
O10 A:BYN601 4.1 70.5 1.0
N A:ALA220 4.3 65.1 1.0
CA A:GLY168 4.3 66.4 1.0
N A:GLY221 4.5 66.9 1.0
C A:GLY221 4.5 66.9 1.0
N A:GLY223 4.6 63.8 1.0
H27 A:BYN601 4.6 70.5 1.0
N A:GLY168 4.6 66.4 1.0
CB A:ALA220 4.7 65.1 1.0
C20 A:BYN601 4.8 70.5 1.0
ND1 A:HIS166 4.9 65.2 1.0
CE1 A:HIS166 4.9 65.2 1.0
O8 A:BYN601 4.9 70.5 1.0

Potassium binding site 2 out of 6 in 8oz5

Go back to Potassium Binding Sites List in 8oz5
Potassium binding site 2 out of 6 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K605

b:64.1
occ:1.00
 O B:ALA222 2.8 65.8 1.0
O B:ILE167 2.8 65.0 1.0
OE2 B:GLU235 2.8 66.6 1.0
O9 B:BYN601 2.8 70.2 1.0
O B:VAL219 3.0 64.8 1.0
O B:ALA220 3.1 65.4 1.0
H28 B:BYN601 3.2 70.2 1.0
C B:ALA220 3.5 65.4 1.0
O5 B:BYN601 3.5 70.2 1.0
C B:ALA222 3.5 65.8 1.0
CA B:ALA220 3.5 65.4 1.0
P1 B:BYN601 3.6 70.2 1.0
O7 B:BYN601 3.7 70.2 1.0
N B:ALA222 3.7 65.8 1.0
CD B:GLU235 3.8 66.6 1.0
CB B:ALA222 3.8 65.8 1.0
CA B:ALA222 3.9 65.8 1.0
C B:ILE167 4.0 65.0 1.0
C B:VAL219 4.0 64.8 1.0
FE B:FE603 4.0 75.5 1.0
OE1 B:GLU235 4.1 66.6 1.0
O10 B:BYN601 4.1 70.2 1.0
N B:ALA220 4.3 65.4 1.0
CA B:GLY168 4.3 66.1 1.0
N B:GLY221 4.5 66.8 1.0
C B:GLY221 4.5 66.8 1.0
N B:GLY223 4.6 62.6 1.0
H27 B:BYN601 4.6 70.2 1.0
N B:GLY168 4.6 66.1 1.0
CB B:ALA220 4.7 65.4 1.0
C20 B:BYN601 4.8 70.2 1.0
ND1 B:HIS166 4.9 64.6 1.0
CE1 B:HIS166 4.9 64.6 1.0
O8 B:BYN601 4.9 70.2 1.0

Potassium binding site 3 out of 6 in 8oz5

Go back to Potassium Binding Sites List in 8oz5
Potassium binding site 3 out of 6 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K605

b:64.6
occ:1.00
 O C:ALA222 2.8 66.1 1.0
O C:ILE167 2.8 65.0 1.0
OE2 C:GLU235 2.8 66.6 1.0
O9 C:BYN601 2.8 70.4 1.0
O C:VAL219 3.0 65.1 1.0
O C:ALA220 3.1 65.7 1.0
H28 C:BYN601 3.2 70.4 1.0
C C:ALA220 3.5 65.7 1.0
O5 C:BYN601 3.5 70.4 1.0
C C:ALA222 3.5 66.1 1.0
CA C:ALA220 3.5 65.7 1.0
P1 C:BYN601 3.6 70.4 1.0
O7 C:BYN601 3.7 70.4 1.0
N C:ALA222 3.7 66.1 1.0
CD C:GLU235 3.8 66.6 1.0
CB C:ALA222 3.8 66.1 1.0
CA C:ALA222 3.9 66.1 1.0
C C:ILE167 4.0 65.0 1.0
C C:VAL219 4.0 65.1 1.0
FE C:FE603 4.0 75.1 1.0
OE1 C:GLU235 4.1 66.6 1.0
O10 C:BYN601 4.1 70.4 1.0
N C:ALA220 4.3 65.7 1.0
CA C:GLY168 4.3 66.3 1.0
N C:GLY221 4.5 67.1 1.0
C C:GLY221 4.5 67.1 1.0
N C:GLY223 4.6 63.1 1.0
N C:GLY168 4.6 66.3 1.0
H27 C:BYN601 4.7 70.4 1.0
CB C:ALA220 4.7 65.7 1.0
C20 C:BYN601 4.8 70.4 1.0
ND1 C:HIS166 4.9 64.7 1.0
CE1 C:HIS166 4.9 64.7 1.0
O8 C:BYN601 4.9 70.4 1.0

Potassium binding site 4 out of 6 in 8oz5

Go back to Potassium Binding Sites List in 8oz5
Potassium binding site 4 out of 6 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K605

b:64.3
occ:1.00
 O D:ALA222 2.8 66.0 1.0
O D:ILE167 2.8 64.2 1.0
OE2 D:GLU235 2.8 66.3 1.0
O9 D:BYN601 2.8 70.4 1.0
O D:VAL219 3.0 64.6 1.0
H28 D:BYN601 3.1 70.4 1.0
O D:ALA220 3.1 65.0 1.0
C D:ALA220 3.5 65.0 1.0
O5 D:BYN601 3.5 70.4 1.0
C D:ALA222 3.5 66.0 1.0
CA D:ALA220 3.5 65.0 1.0
P1 D:BYN601 3.6 70.4 1.0
O7 D:BYN601 3.7 70.4 1.0
N D:ALA222 3.7 66.0 1.0
CD D:GLU235 3.8 66.3 1.0
CB D:ALA222 3.8 66.0 1.0
CA D:ALA222 3.9 66.0 1.0
C D:ILE167 4.0 64.2 1.0
C D:VAL219 4.0 64.6 1.0
FE D:FE603 4.0 75.2 1.0
OE1 D:GLU235 4.1 66.3 1.0
O10 D:BYN601 4.1 70.4 1.0
N D:ALA220 4.3 65.0 1.0
CA D:GLY168 4.3 66.0 1.0
N D:GLY221 4.5 67.0 1.0
C D:GLY221 4.5 67.0 1.0
H27 D:BYN601 4.5 70.4 1.0
N D:GLY223 4.6 63.9 1.0
N D:GLY168 4.6 66.0 1.0
CB D:ALA220 4.7 65.0 1.0
C20 D:BYN601 4.8 70.4 1.0
ND1 D:HIS166 4.9 64.9 1.0
CE1 D:HIS166 4.9 64.9 1.0
O8 D:BYN601 4.9 70.4 1.0

Potassium binding site 5 out of 6 in 8oz5

Go back to Potassium Binding Sites List in 8oz5
Potassium binding site 5 out of 6 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K605

b:63.0
occ:1.00
 O E:ALA222 2.8 66.3 1.0
O E:ILE167 2.8 63.8 1.0
OE2 E:GLU235 2.8 66.4 1.0
O9 E:BYN601 2.8 69.8 1.0
O E:VAL219 3.0 63.9 1.0
H28 E:BYN601 3.1 69.8 1.0
O E:ALA220 3.1 65.1 1.0
C E:ALA220 3.5 65.1 1.0
O5 E:BYN601 3.5 69.8 1.0
C E:ALA222 3.5 66.3 1.0
CA E:ALA220 3.5 65.1 1.0
P1 E:BYN601 3.6 69.8 1.0
O7 E:BYN601 3.7 69.8 1.0
N E:ALA222 3.7 66.3 1.0
CD E:GLU235 3.8 66.4 1.0
CB E:ALA222 3.8 66.3 1.0
CA E:ALA222 3.9 66.3 1.0
C E:ILE167 4.0 63.8 1.0
C E:VAL219 4.0 63.9 1.0
FE E:FE603 4.0 75.5 1.0
OE1 E:GLU235 4.1 66.4 1.0
O10 E:BYN601 4.1 69.8 1.0
N E:ALA220 4.3 65.1 1.0
CA E:GLY168 4.3 65.5 1.0
N E:GLY221 4.5 66.7 1.0
C E:GLY221 4.5 66.7 1.0
H27 E:BYN601 4.5 69.8 1.0
N E:GLY223 4.6 63.6 1.0
N E:GLY168 4.6 65.5 1.0
CB E:ALA220 4.7 65.1 1.0
C20 E:BYN601 4.8 69.8 1.0
ND1 E:HIS166 4.9 64.3 1.0
CE1 E:HIS166 4.9 64.3 1.0
O8 E:BYN601 4.9 69.8 1.0

Potassium binding site 6 out of 6 in 8oz5

Go back to Potassium Binding Sites List in 8oz5
Potassium binding site 6 out of 6 in the Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K605

b:62.6
occ:1.00
 O F:ALA222 2.8 65.9 1.0
O F:ILE167 2.8 63.9 1.0
OE2 F:GLU235 2.8 66.1 1.0
O9 F:BYN601 2.8 69.8 1.0
O F:VAL219 3.0 64.0 1.0
H28 F:BYN601 3.1 69.8 1.0
O F:ALA220 3.1 65.2 1.0
C F:ALA220 3.5 65.2 1.0
O5 F:BYN601 3.5 69.8 1.0
C F:ALA222 3.5 65.9 1.0
CA F:ALA220 3.5 65.2 1.0
P1 F:BYN601 3.6 69.8 1.0
O7 F:BYN601 3.7 69.8 1.0
N F:ALA222 3.7 65.9 1.0
CD F:GLU235 3.8 66.1 1.0
CB F:ALA222 3.8 65.9 1.0
CA F:ALA222 3.9 65.9 1.0
C F:ILE167 4.0 63.9 1.0
C F:VAL219 4.0 64.0 1.0
FE F:FE603 4.0 75.4 1.0
OE1 F:GLU235 4.1 66.1 1.0
O10 F:BYN601 4.1 69.8 1.0
N F:ALA220 4.3 65.2 1.0
CA F:GLY168 4.3 65.6 1.0
N F:GLY221 4.5 66.4 1.0
C F:GLY221 4.5 66.4 1.0
H27 F:BYN601 4.6 69.8 1.0
N F:GLY223 4.6 63.5 1.0
N F:GLY168 4.6 65.6 1.0
CB F:ALA220 4.7 65.2 1.0
C20 F:BYN601 4.8 69.8 1.0
ND1 F:HIS166 4.9 64.3 1.0
CE1 F:HIS166 4.9 64.3 1.0
O8 F:BYN601 4.9 69.8 1.0

Reference:

K.Kayastha, U.Ermler. Cryo-Em Structure of Phthaloyl-Coa Decarboxylase (Pcd) Bound with Substrate Analog/Inhibitor, 2-Cn-Benzoyl-Coa To Be Published.
Page generated: Tue Aug 13 00:20:26 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy