Atomistry » Potassium » PDB 8jxp-8q0m » 8ooi
Atomistry »
  Potassium »
    PDB 8jxp-8q0m »
      8ooi »

Potassium in PDB 8ooi: Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State

Enzymatic activity of Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State

All present enzymatic activity of Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State:
3.6.4.6;

Other elements in 8ooi:

The structure of Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State also contains other interesting chemical elements:

Magnesium (Mg) 18 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State (pdb code 8ooi). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State, PDB code: 8ooi:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in 8ooi

Go back to Potassium Binding Sites List in 8ooi
Potassium binding site 1 out of 6 in the Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K905

b:50.0
occ:1.00
O2A A:ADP901 3.1 50.0 1.0
O1A A:ADP901 3.7 50.0 1.0
PA A:ADP901 3.7 50.0 1.0
C5' A:ADP901 4.1 50.0 1.0
O5' A:ADP901 4.2 50.0 1.0
CB A:THR252 4.3 50.0 1.0
C3' A:ADP901 4.3 50.0 1.0
O3' A:ADP901 4.4 50.0 1.0
CG2 A:THR252 4.5 50.0 1.0
MG A:MG904 4.5 50.0 0.5
N A:LEU253 4.7 28.2 1.0
C4' A:ADP901 4.8 50.0 1.0

Potassium binding site 2 out of 6 in 8ooi

Go back to Potassium Binding Sites List in 8ooi
Potassium binding site 2 out of 6 in the Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K906

b:50.0
occ:1.00
O2A F:ADP902 3.1 50.0 1.0
O1A F:ADP902 3.7 50.0 1.0
PA F:ADP902 3.7 50.0 1.0
C5' F:ADP902 4.1 50.0 1.0
O5' F:ADP902 4.2 50.0 1.0
CB F:THR252 4.3 50.0 1.0
C3' F:ADP902 4.3 50.0 1.0
O3' F:ADP902 4.4 50.0 1.0
CG2 F:THR252 4.5 50.0 1.0
MG F:MG905 4.5 50.0 0.5
N F:LEU253 4.7 28.2 1.0
C4' F:ADP902 4.8 50.0 1.0

Potassium binding site 3 out of 6 in 8ooi

Go back to Potassium Binding Sites List in 8ooi
Potassium binding site 3 out of 6 in the Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K905

b:50.0
occ:1.00
O2A B:ADP901 3.1 50.0 1.0
O1A B:ADP901 3.7 50.0 1.0
PA B:ADP901 3.7 50.0 1.0
C5' B:ADP901 4.1 50.0 1.0
O5' B:ADP901 4.2 50.0 1.0
CB B:THR252 4.3 50.0 1.0
C3' B:ADP901 4.3 50.0 1.0
O3' B:ADP901 4.4 50.0 1.0
CG2 B:THR252 4.5 50.0 1.0
MG B:MG904 4.5 50.0 0.5
N B:LEU253 4.7 28.2 1.0
C4' B:ADP901 4.8 50.0 1.0

Potassium binding site 4 out of 6 in 8ooi

Go back to Potassium Binding Sites List in 8ooi
Potassium binding site 4 out of 6 in the Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K905

b:50.0
occ:1.00
O2A D:ADP901 3.1 50.0 1.0
O1A D:ADP901 3.7 50.0 1.0
PA D:ADP901 3.7 50.0 1.0
C5' D:ADP901 4.1 50.0 1.0
O5' D:ADP901 4.2 50.0 1.0
CB D:THR252 4.3 50.0 1.0
C3' D:ADP901 4.3 50.0 1.0
O3' D:ADP901 4.4 50.0 1.0
CG2 D:THR252 4.5 50.0 1.0
MG D:MG904 4.5 50.0 0.5
N D:LEU253 4.7 28.2 1.0
C4' D:ADP901 4.8 50.0 1.0

Potassium binding site 5 out of 6 in 8ooi

Go back to Potassium Binding Sites List in 8ooi
Potassium binding site 5 out of 6 in the Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K906

b:50.0
occ:1.00
O2A C:ADP902 3.1 50.0 1.0
O1A C:ADP902 3.7 50.0 1.0
PA C:ADP902 3.7 50.0 1.0
C5' C:ADP902 4.1 50.0 1.0
O5' C:ADP902 4.2 50.0 1.0
CB C:THR252 4.3 50.0 1.0
C3' C:ADP902 4.3 50.0 1.0
O3' C:ADP902 4.4 50.0 1.0
CG2 C:THR252 4.5 50.0 1.0
MG C:MG905 4.5 50.0 0.5
N C:LEU253 4.7 28.2 1.0
C4' C:ADP902 4.8 50.0 1.0

Potassium binding site 6 out of 6 in 8ooi

Go back to Potassium Binding Sites List in 8ooi
Potassium binding site 6 out of 6 in the Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Full Composite Cryo-Em Map of P97/Vcp in Adp.Pi State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K906

b:50.0
occ:1.00
O2A E:ADP902 3.1 50.0 1.0
O1A E:ADP902 3.7 50.0 1.0
PA E:ADP902 3.7 50.0 1.0
C5' E:ADP902 4.1 50.0 1.0
O5' E:ADP902 4.2 50.0 1.0
CB E:THR252 4.3 50.0 1.0
C3' E:ADP902 4.3 50.0 1.0
O3' E:ADP902 4.4 50.0 1.0
CG2 E:THR252 4.5 50.0 1.0
MG E:MG905 4.5 50.0 0.5
N E:LEU253 4.7 28.2 1.0
C4' E:ADP902 4.8 50.0 1.0

Reference:

M.Shein, M.Hitzenberger, Cheng T.C., Rout S.R., Leitl K.D., Sato Y., Zacharias M., Sakata E., Schuetz A.K.. Characterizing Atp Processing By the Aaa+ Protein P97 at the Atomic Level Nat.Chem. 2024.
ISSN: ESSN 1755-4349
DOI: 10.1038/S41557-024-01440-0
Page generated: Tue Aug 13 00:15:43 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy