Potassium in PDB 8olj: Crystal Structure of Archaeoglobus Fulgidus Afago-N Protein Representing N-L1-L2 Domains

The structure of Crystal Structure of Archaeoglobus Fulgidus Afago-N Protein Representing N-L1-L2 Domains, PDB code: 8olj was solved by E.N.Manakova, M.Zaremba, S.Grazulis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	53.70 / 1.40
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	75.264, 75.264, 94.722, 90, 90, 120
R / Rfree (%)	14.5 / 17.8

The binding sites of Potassium atom in the Crystal Structure of Archaeoglobus Fulgidus Afago-N Protein Representing N-L1-L2 Domains (pdb code 8olj). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Crystal Structure of Archaeoglobus Fulgidus Afago-N Protein Representing N-L1-L2 Domains, PDB code: 8olj:
Jump to Potassium binding site number: 1; 2; 3;

Potassium binding site 1 out of 3 in the Crystal Structure of Archaeoglobus Fulgidus Afago-N Protein Representing N-L1-L2 Domains


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Archaeoglobus Fulgidus Afago-N Protein Representing N-L1-L2 Domains within 5.0Å range: probe atom residue distance (Å) B Occ B:K315 b:50.9 occ:1.00 O B:HOH512 2.3 27.8 1.0 O B:HOH588 2.5 28.6 1.0 O B:PRO238 2.9 16.8 0.5 O B:HOH525 3.0 31.9 1.0 O B:PRO238 3.4 19.7 0.5 O B:HOH462 3.5 25.9 1.0 CG B:GLU240 3.6 17.2 0.5 OE2 B:GLU240 3.9 22.8 0.5 C B:PRO238 3.9 15.8 0.5 O B:HOH664 4.0 40.8 1.0 CD B:GLU240 4.0 18.3 0.5 CB B:LYS237 4.0 19.1 1.0 C B:PRO238 4.1 18.0 0.5 O B:HOH518 4.1 35.8 1.0 N B:GLU240 4.2 16.8 0.5 O B:LYS237 4.2 17.8 1.0 N B:GLU240 4.2 15.4 0.5 CA B:LEU239 4.2 19.1 1.0 O B:HOH648 4.3 40.5 1.0 CB B:GLU240 4.3 15.9 0.5 N B:LEU239 4.5 18.8 1.0 C B:LYS237 4.5 16.4 1.0 CE B:LYS237 4.5 22.2 1.0 OE2 B:GLU240 4.5 16.9 0.5 O B:HOH498 4.5 32.8 0.5 CB B:GLU240 4.6 17.2 0.5 C B:LEU239 4.6 17.1 1.0 CD B:LYS237 4.7 20.3 1.0 NZ B:LYS237 4.8 25.5 1.0 OE1 B:GLU240 4.8 19.1 0.5 N B:PRO238 4.9 16.4 0.5 CA B:LYS237 5.0 16.8 1.0 N B:PRO238 5.0 15.4 0.5 CG B:LYS237 5.0 19.8 1.0 CA B:GLU240 5.0 15.7 0.5

Potassium binding site 2 out of 3 in the Crystal Structure of Archaeoglobus Fulgidus Afago-N Protein Representing N-L1-L2 Domains


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Archaeoglobus Fulgidus Afago-N Protein Representing N-L1-L2 Domains within 5.0Å range: probe atom residue distance (Å) B Occ B:K316 b:64.6 occ:1.00 OE2 B:GLU117 2.2 39.4 1.0 O B:HOH574 2.6 32.5 1.0 O B:HOH484 2.6 28.6 1.0 OH B:TYR129 2.8 20.8 0.5 CD B:GLU117 3.2 31.9 1.0 O B:HOH404 3.3 23.3 0.5 CE2 B:TYR129 3.3 20.0 0.5 CZ B:TYR129 3.5 17.7 0.5 CG B:GLU117 3.6 25.7 1.0 CE2 B:TYR129 3.8 11.6 0.5 O B:HOH629 3.8 41.8 1.0 O B:HOH620 3.9 46.5 1.0 CG2 B:ILE115 4.2 16.3 1.0 OE1 B:GLU117 4.4 32.1 1.0 NZ B:LYS113 4.4 22.1 1.0 CB B:GLU117 4.5 19.4 1.0 CD2 B:TYR129 4.6 16.3 0.5 CD2 B:TYR129 4.6 11.2 0.5 OH B:TYR129 4.6 12.9 0.5 O B:HOH624 4.7 38.0 1.0 CZ B:TYR129 4.7 12.1 0.5 CG1 B:ILE115 4.7 17.0 1.0 CB B:ILE115 4.8 14.9 1.0 CE B:LYS113 4.8 22.7 1.0 CA B:ILE115 4.9 15.3 1.0 CE1 B:TYR129 4.9 17.7 0.5 N B:GLU117 4.9 16.6 1.0 O B:HOH463 4.9 46.0 1.0

Potassium binding site 3 out of 3 in the Crystal Structure of Archaeoglobus Fulgidus Afago-N Protein Representing N-L1-L2 Domains


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Archaeoglobus Fulgidus Afago-N Protein Representing N-L1-L2 Domains within 5.0Å range: probe atom residue distance (Å) B Occ B:K317 b:50.0 occ:0.50 O B:HOH410 2.6 29.6 1.0 OG B:SER122 2.8 19.9 0.5 OG B:SER122 2.8 14.2 0.5 O B:SER122 3.0 16.1 0.5 C B:SER122 3.2 14.2 0.5 CB B:SER122 3.3 18.8 0.5 C B:SER122 3.4 14.3 0.5 N B:ASN123 3.5 14.3 1.0 O B:SER122 3.5 14.8 0.5 CB B:SER122 3.5 13.5 0.5 CA B:ASN123 3.7 15.0 1.0 CA B:SER122 4.0 15.2 0.5 CA B:SER122 4.0 13.4 0.5 NH2 B:ARG156 4.1 18.3 1.0 NE B:ARG156 4.4 17.9 1.0 CZ B:ARG156 4.4 16.9 1.0 CB B:ASN123 4.5 15.9 1.0 O B:HOH510 4.6 19.1 1.0 C B:ASN123 4.9 13.9 1.0 N B:SER122 5.0 13.5 0.5 O B:HOH554 5.0 30.2 1.0

E.Manakova, E.Golovinas, R.Poceviciute, G.Sasnauskas, A.Silanskas, D.Rutkauskas, M.Jankunec, E.Zagorskaite, E.Jurgelaitis, A.Grybauskas, C.Venclovas, M.Zaremba. The Missing Part: the Archaeoglobus Fulgidus Argonaute Forms A Functional Heterodimer with An N-L1-L2 Domain Protein. Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962
PubMed: 38197228
DOI: 10.1093/NAR/GKAD1241