Potassium in PDB 8g7m: Atp-Bound MTHSP60 V72I Focus

Enzymatic activity of Atp-Bound MTHSP60 V72I Focus

All present enzymatic activity of Atp-Bound MTHSP60 V72I Focus:
5.6.1.7;

Other elements in 8g7m:

The structure of Atp-Bound MTHSP60 V72I Focus also contains other interesting chemical elements:

Magnesium (Mg) 7 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Atp-Bound MTHSP60 V72I Focus (pdb code 8g7m). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Atp-Bound MTHSP60 V72I Focus, PDB code: 8g7m:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in 8g7m

Go back to Potassium Binding Sites List in 8g7m
Potassium binding site 1 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K603

b:46.8
occ:1.00
 O1G A:ATP601 2.8 41.5 1.0
O A:THR28 2.8 37.3 1.0
OG1 A:THR28 2.8 37.3 1.0
O A:LYS49 2.9 40.4 1.0
O2A A:ATP601 3.0 41.5 1.0
CB A:THR28 3.5 37.3 1.0
OG1 A:THR88 3.5 41.0 1.0
C A:THR28 3.5 37.3 1.0
O3A A:ATP601 3.7 41.5 1.0
NZ A:LYS49 3.9 40.4 1.0
PA A:ATP601 3.9 41.5 1.0
C A:LYS49 4.1 40.4 1.0
CA A:THR28 4.1 37.3 1.0
PG A:ATP601 4.2 41.5 1.0
CG A:LYS49 4.3 40.4 1.0
N A:MET29 4.3 39.3 1.0
N A:GLY51 4.4 39.2 1.0
CA A:MET29 4.5 39.3 1.0
CB A:THR88 4.5 41.0 1.0
O2G A:ATP601 4.6 41.5 1.0
O1A A:ATP601 4.7 41.5 1.0
CG2 A:THR28 4.8 37.3 1.0
O3B A:ATP601 4.8 41.5 1.0
CA A:ASP50 4.9 42.2 1.0
C A:ASP50 4.9 42.2 1.0
CE A:LYS49 4.9 40.4 1.0
PB A:ATP601 4.9 41.5 1.0
N A:ASP50 4.9 42.2 1.0
CA A:GLY51 4.9 39.2 1.0
CG2 A:THR88 4.9 41.0 1.0

Potassium binding site 2 out of 7 in 8g7m

Go back to Potassium Binding Sites List in 8g7m
Potassium binding site 2 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K603

b:52.2
occ:1.00
 O1G B:ATP601 2.8 40.8 1.0
O B:THR28 2.8 37.4 1.0
O B:LYS49 2.9 41.5 1.0
OG1 B:THR28 2.9 37.4 1.0
O2A B:ATP601 3.0 40.8 1.0
CB B:THR28 3.5 37.4 1.0
C B:THR28 3.5 37.4 1.0
OG1 B:THR88 3.6 39.2 1.0
O3A B:ATP601 3.6 40.8 1.0
PA B:ATP601 3.8 40.8 1.0
NZ B:LYS49 4.1 41.5 1.0
PG B:ATP601 4.1 40.8 1.0
C B:LYS49 4.1 41.5 1.0
CA B:THR28 4.2 37.4 1.0
N B:MET29 4.3 37.8 1.0
CG B:LYS49 4.4 41.5 1.0
O1A B:ATP601 4.4 40.8 1.0
O2G B:ATP601 4.4 40.8 1.0
CA B:MET29 4.5 37.8 1.0
N B:GLY51 4.6 37.4 1.0
CB B:THR88 4.6 39.2 1.0
O3B B:ATP601 4.8 40.8 1.0
CA B:ASP50 4.8 41.5 1.0
CG2 B:THR28 4.8 37.4 1.0
N B:ASP50 4.9 41.5 1.0
PB B:ATP601 4.9 40.8 1.0
C B:ASP50 4.9 41.5 1.0

Potassium binding site 3 out of 7 in 8g7m

Go back to Potassium Binding Sites List in 8g7m
Potassium binding site 3 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K603

b:51.5
occ:1.00
 O1G C:ATP601 2.8 42.5 1.0
O C:THR28 2.8 39.5 1.0
O C:LYS49 2.9 40.6 1.0
OG1 C:THR28 2.9 39.5 1.0
O2A C:ATP601 2.9 42.5 1.0
C C:THR28 3.5 39.5 1.0
O3A C:ATP601 3.5 42.5 1.0
CB C:THR28 3.6 39.5 1.0
OG1 C:THR88 3.6 39.7 1.0
PA C:ATP601 3.8 42.5 1.0
NZ C:LYS49 4.0 40.6 1.0
PG C:ATP601 4.1 42.5 1.0
C C:LYS49 4.1 40.6 1.0
CA C:THR28 4.2 39.5 1.0
N C:MET29 4.2 55.7 1.0
CA C:MET29 4.3 55.7 1.0
O2G C:ATP601 4.4 42.5 1.0
CG C:LYS49 4.4 40.6 1.0
O1A C:ATP601 4.4 42.5 1.0
N C:GLY51 4.5 38.7 1.0
CB C:THR88 4.6 39.7 1.0
O3B C:ATP601 4.7 42.5 1.0
CA C:ASP50 4.8 41.1 1.0
PB C:ATP601 4.8 42.5 1.0
C C:ASP50 4.9 41.1 1.0
CG2 C:THR28 4.9 39.5 1.0
N C:ASP50 4.9 41.1 1.0

Potassium binding site 4 out of 7 in 8g7m

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Potassium binding site 4 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K603

b:54.5
occ:1.00
 O1G D:ATP601 2.8 55.7 1.0
O D:THR28 2.8 39.6 1.0
O D:LYS49 2.8 45.1 1.0
OG1 D:THR28 2.9 39.6 1.0
O2A D:ATP601 3.2 55.7 1.0
OG1 D:THR88 3.5 43.0 1.0
C D:THR28 3.5 39.6 1.0
O3A D:ATP601 3.6 55.7 1.0
CB D:THR28 3.6 39.6 1.0
PA D:ATP601 3.9 55.7 1.0
C D:LYS49 4.1 45.1 1.0
NZ D:LYS49 4.1 45.1 1.0
PG D:ATP601 4.1 55.7 1.0
CA D:THR28 4.2 39.6 1.0
N D:MET29 4.3 42.9 1.0
CA D:MET29 4.4 42.9 1.0
CG D:LYS49 4.4 45.1 1.0
O1A D:ATP601 4.5 55.7 1.0
N D:GLY51 4.5 41.1 1.0
CB D:THR88 4.5 43.0 1.0
O2G D:ATP601 4.6 55.7 1.0
O3B D:ATP601 4.7 55.7 1.0
PB D:ATP601 4.8 55.7 1.0
CA D:ASP50 4.8 44.6 1.0
C D:ASP50 4.9 44.6 1.0
N D:ASP50 4.9 44.6 1.0
CG2 D:THR28 4.9 39.6 1.0
CG2 D:THR88 4.9 43.0 1.0
CA D:GLY51 5.0 41.1 1.0

Potassium binding site 5 out of 7 in 8g7m

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Potassium binding site 5 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K603

b:43.4
occ:1.00
 O1G E:ATP601 2.8 43.6 1.0
O E:THR28 2.8 38.2 1.0
O E:LYS49 2.9 41.9 1.0
OG1 E:THR28 2.9 38.2 1.0
O2A E:ATP601 3.0 43.6 1.0
OG1 E:THR88 3.4 40.4 1.0
C E:THR28 3.6 38.2 1.0
CB E:THR28 3.7 38.2 1.0
O3A E:ATP601 3.8 43.6 1.0
PA E:ATP601 4.0 43.6 1.0
PG E:ATP601 4.0 43.6 1.0
C E:LYS49 4.1 41.9 1.0
NZ E:LYS49 4.2 41.9 1.0
CA E:THR28 4.3 38.2 1.0
N E:MET29 4.3 40.6 1.0
O2G E:ATP601 4.3 43.6 1.0
N E:GLY51 4.4 38.5 1.0
CA E:MET29 4.4 40.6 1.0
CB E:THR88 4.4 40.4 1.0
CG E:LYS49 4.5 41.9 1.0
O3B E:ATP601 4.7 43.6 1.0
O1A E:ATP601 4.8 43.6 1.0
CA E:ASP50 4.8 41.8 1.0
CA E:GLY51 4.9 38.5 1.0
C E:ASP50 4.9 41.8 1.0
CG2 E:THR88 4.9 40.4 1.0
PB E:ATP601 4.9 43.6 1.0
N E:ASP50 5.0 41.8 1.0
CG2 E:THR28 5.0 38.2 1.0

Potassium binding site 6 out of 7 in 8g7m

Go back to Potassium Binding Sites List in 8g7m
Potassium binding site 6 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K603

b:44.1
occ:1.00
 O F:THR28 2.8 37.4 1.0
O1G F:ATP601 2.8 45.3 1.0
OG1 F:THR28 2.9 37.4 1.0
O F:LYS49 2.9 40.1 1.0
O2A F:ATP601 3.1 45.3 1.0
OG1 F:THR88 3.3 41.4 1.0
C F:THR28 3.5 37.4 1.0
CB F:THR28 3.6 37.4 1.0
O3A F:ATP601 3.7 45.3 1.0
PA F:ATP601 4.0 45.3 1.0
PG F:ATP601 4.1 45.3 1.0
C F:LYS49 4.1 40.1 1.0
NZ F:LYS49 4.2 40.1 1.0
CA F:THR28 4.2 37.4 1.0
N F:MET29 4.3 39.9 1.0
CB F:THR88 4.4 41.4 1.0
CA F:MET29 4.4 39.9 1.0
N F:GLY51 4.4 37.6 1.0
O2G F:ATP601 4.4 45.3 1.0
CG F:LYS49 4.5 40.1 1.0
O3B F:ATP601 4.7 45.3 1.0
CG2 F:THR88 4.8 41.4 1.0
O1A F:ATP601 4.8 45.3 1.0
CA F:GLY51 4.9 37.6 1.0
CA F:ASP50 4.9 39.9 1.0
C F:ASP50 4.9 39.9 1.0
PB F:ATP601 4.9 45.3 1.0
CG2 F:THR28 4.9 37.4 1.0
N F:ASP50 5.0 39.9 1.0

Potassium binding site 7 out of 7 in 8g7m

Go back to Potassium Binding Sites List in 8g7m
Potassium binding site 7 out of 7 in the Atp-Bound MTHSP60 V72I Focus


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Atp-Bound MTHSP60 V72I Focus within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K603

b:52.1
occ:1.00
 O1G G:ATP601 2.8 44.3 1.0
O G:THR28 2.8 35.6 1.0
O G:LYS49 2.8 40.6 1.0
O2A G:ATP601 2.9 44.3 1.0
OG1 G:THR28 3.1 35.6 1.0
O3A G:ATP601 3.5 44.3 1.0
C G:THR28 3.6 35.6 1.0
CB G:THR28 3.7 35.6 1.0
PA G:ATP601 3.8 44.3 1.0
NZ G:LYS49 3.8 40.6 1.0
OG1 G:THR88 3.8 39.6 1.0
PG G:ATP601 4.0 44.3 1.0
C G:LYS49 4.1 40.6 1.0
CG G:LYS49 4.2 40.6 1.0
CA G:THR28 4.3 35.6 1.0
O2G G:ATP601 4.3 44.3 1.0
N G:MET29 4.4 37.5 1.0
O1A G:ATP601 4.4 44.3 1.0
CA G:MET29 4.5 37.5 1.0
O3B G:ATP601 4.7 44.3 1.0
N G:GLY51 4.7 39.1 1.0
CB G:THR88 4.8 39.6 1.0
PB G:ATP601 4.8 44.3 1.0
CE G:LYS49 4.9 40.6 1.0
CA G:ASP50 4.9 43.4 1.0
CB G:LYS49 4.9 40.6 1.0
N G:ASP50 4.9 43.4 1.0
CD G:LYS49 5.0 40.6 1.0
CA G:LYS49 5.0 40.6 1.0

Reference:

J.R.Braxton, H.Shao, E.Tse, J.E.Gestwicki, D.R.Southworth. Asymmetric Apical Domain States of Mitochondrial HSP60 Coordinate Substrate Engagement and Chaperonin Assembly. Biorxiv 2023.
ISSN: ISSN 2692-8205
PubMed: 37293102
DOI: 10.1101/2023.05.15.540872
Page generated: Mon Aug 12 23:49:54 2024

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