Potassium in PDB 8g6x: Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe

Other elements in 8g6x:

The structure of Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Magnesium (Mg) 223 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe (pdb code 8g6x). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe, PDB code: 8g6x:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in 8g6x

Go back to Potassium Binding Sites List in 8g6x
Potassium binding site 1 out of 7 in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K6215

b:31.2
occ:1.00
O2' a:G2250 2.6 8.4 1.0
OP2 a:A2497 2.7 8.4 1.0
OP2 a:OMG2251 3.0 8.4 1.0
N7 a:A2497 3.0 8.4 1.0
OP2 a:C2496 3.1 8.4 1.0
O5' a:C2496 3.3 8.4 1.0
C8 a:A2497 3.4 8.4 1.0
P a:C2496 3.6 8.4 1.0
O a:HOH6737 3.7 7.1 1.0
O3' a:G2250 3.7 8.4 1.0
C2' a:G2250 3.8 8.4 1.0
OP1 a:C2496 3.9 8.4 1.0
P a:OMG2251 3.9 8.4 1.0
O a:HOH6635 3.9 8.4 1.0
P a:A2497 4.1 8.4 1.0
C3' a:C2496 4.2 8.4 1.0
O a:HOH8454 4.3 8.4 1.0
C5 a:A2497 4.3 8.4 1.0
C3' a:G2250 4.4 8.4 1.0
C1' a:G2250 4.4 8.4 1.0
C5' a:C2496 4.4 8.4 1.0
O3' a:C2496 4.5 8.4 1.0
O5' a:A2497 4.7 8.4 1.0
CD l:4D481 4.7 8.4 1.0
OP1 a:OMG2251 4.7 8.4 1.0
N9 a:A2497 4.8 8.4 1.0
C4' a:C2496 4.9 8.4 1.0

Potassium binding site 2 out of 7 in 8g6x

Go back to Potassium Binding Sites List in 8g6x
Potassium binding site 2 out of 7 in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K6218

b:31.2
occ:1.00
O a:HOH8598 2.7 10.3 1.0
O6 a:G26 2.8 8.4 1.0
OP2 a:U25 2.9 8.4 1.0
O6 a:G27 3.3 8.4 1.0
N7 a:G26 3.3 8.4 1.0
C6 a:G26 3.6 8.4 1.0
O a:HOH8240 3.6 8.4 1.0
C5 a:G26 3.8 8.4 1.0
P a:U25 4.2 8.4 1.0
C6 a:G27 4.2 8.4 1.0
O a:HOH6627 4.2 10.5 1.0
C5 a:U25 4.3 8.4 1.0
O5' a:U25 4.5 8.4 1.0
C8 a:G26 4.5 8.4 1.0
C6 a:U25 4.6 8.4 1.0
N1 a:G27 4.7 8.4 1.0
O a:HOH6731 4.8 5.2 1.0
N1 a:G26 4.9 8.4 1.0
OP1 a:U25 5.0 8.4 1.0

Potassium binding site 3 out of 7 in 8g6x

Go back to Potassium Binding Sites List in 8g6x
Potassium binding site 3 out of 7 in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K6219

b:31.2
occ:1.00
O6 a:G2061 2.8 0.0 1.0
O a:HOH8840 2.9 8.4 1.0
O6 a:G2447 3.0 0.0 1.0
O4' a:C2501 3.0 1.9 1.0
N7 a:G2447 3.0 0.0 1.0
N7 a:G2061 3.1 0.0 1.0
O2 a:PSU2504 3.2 0.4 1.0
O2 a:C2501 3.4 0.3 1.0
C6 a:G2061 3.4 0.0 1.0
C5 a:G2061 3.6 0.0 1.0
C6 a:G2447 3.6 0.0 1.0
C5 a:G2447 3.6 0.0 1.0
C1' a:C2501 3.7 0.0 1.0
N1 a:PSU2504 3.8 1.6 1.0
C4' a:C2501 3.8 1.6 1.0
C2 a:PSU2504 3.9 0.7 1.0
C2 a:C2501 4.0 1.2 1.0
N6 a:A2451 4.1 0.0 1.0
N1 a:C2501 4.1 0.0 1.0
C8 a:G2447 4.2 0.1 1.0
C5' a:C2501 4.2 0.0 1.0
C8 a:G2061 4.3 0.0 1.0
C2' a:U2500 4.5 0.9 1.0
N1 a:G2061 4.8 0.0 1.0
O2' a:U2500 4.8 2.9 1.0
C4 a:G2447 4.9 0.5 1.0
C4 a:G2061 4.9 1.1 1.0
N3 a:C2501 4.9 0.2 1.0
N1 a:G2447 4.9 0.0 1.0
C6 a:PSU2504 5.0 1.9 1.0
O2 a:U2500 5.0 0.0 1.0

Potassium binding site 4 out of 7 in 8g6x

Go back to Potassium Binding Sites List in 8g6x
Potassium binding site 4 out of 7 in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K6220

b:31.2
occ:1.00
O a:HOH7479 2.8 8.4 1.0
OP1 a:C2501 3.0 1.3 1.0
OP1 a:2MA2503 3.0 3.3 1.0
O3' a:A575 3.1 8.4 1.0
OP1 a:PSU2504 3.1 0.3 1.0
O a:HOH8901 3.2 6.9 1.0
OP1 a:U576 3.2 8.4 1.0
O5' a:2MA2503 3.3 1.0 1.0
O3' a:U2500 3.5 0.4 1.0
MG a:MG6077 3.7 8.4 1.0
P a:2MA2503 3.7 0.0 1.0
OP2 a:PSU2504 3.8 2.1 1.0
P a:U576 3.8 8.4 1.0
P a:C2501 3.9 0.0 1.0
P a:PSU2504 3.9 2.2 1.0
C3' a:A575 4.2 8.4 1.0
O a:HOH7361 4.3 8.4 1.0
O2' a:A575 4.4 8.4 1.0
C4' a:A575 4.4 8.4 1.0
C5' a:C2501 4.4 0.0 1.0
C5' a:2MA2503 4.4 0.0 1.0
C5' a:U576 4.5 8.4 1.0
C4' a:2MA2503 4.6 0.1 1.0
O5' a:C2501 4.6 2.4 1.0
O2' a:U2500 4.6 2.9 1.0
O a:HOH8239 4.6 5.8 1.0
O5' a:U576 4.7 8.4 1.0
OP2 a:2MA2503 4.7 0.0 1.0
C3' a:U2500 4.7 0.0 1.0
C3' a:2MA2503 4.8 1.2 1.0
O3' a:2MA2503 4.9 0.6 1.0
C2' a:A575 5.0 8.4 1.0
C5' a:A575 5.0 8.4 1.0
OP2 a:U576 5.0 8.4 1.0

Potassium binding site 5 out of 7 in 8g6x

Go back to Potassium Binding Sites List in 8g6x
Potassium binding site 5 out of 7 in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K6221

b:31.2
occ:1.00
N1 a:A2614 2.8 8.4 1.0
O a:HOH6537 3.0 8.4 1.0
N7 a:G2053 3.0 8.4 1.0
O2' a:A2051 3.1 8.4 1.0
N3 a:A2051 3.3 8.4 1.0
O6 a:G2053 3.4 8.4 1.0
N6 a:A2052 3.5 8.4 1.0
C2 a:A2614 3.5 8.4 1.0
N7 a:A2052 3.5 8.4 1.0
C5 a:A2052 3.6 8.4 1.0
C6 a:A2052 3.7 8.4 1.0
C6 a:A2614 3.7 8.4 1.0
N6 a:A2577 3.8 8.4 1.0
C5 a:G2053 3.8 8.4 1.0
N6 a:A2614 3.8 8.4 1.0
C2 a:A2051 3.9 8.4 1.0
C6 a:G2053 4.0 8.4 1.0
C6 a:A2577 4.0 8.4 1.0
C8 a:G2053 4.0 8.4 1.0
C4 a:A2051 4.1 8.4 1.0
C2' a:A2051 4.2 8.4 1.0
C1' a:A2051 4.2 8.4 1.0
C5 a:A2577 4.3 8.4 1.0
C8 a:A2052 4.3 8.4 1.0
N9 a:A2051 4.5 8.4 1.0
N1 a:A2577 4.5 8.4 1.0
C4 a:A2052 4.6 8.4 1.0
N1 a:A2052 4.6 8.4 1.0
N7 a:A2577 4.6 8.4 1.0
N3 a:A2614 4.7 8.4 1.0
O3' a:A2051 4.9 8.4 1.0
C5 a:A2614 4.9 8.4 1.0
N9 a:A2052 4.9 8.4 1.0

Potassium binding site 6 out of 7 in 8g6x

Go back to Potassium Binding Sites List in 8g6x
Potassium binding site 6 out of 7 in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe within 5.0Å range:
probe atom residue distance (Å) B Occ
c:K302

b:55.1
occ:1.00
O c:GLY237 2.7 13.8 1.0
O a:HOH7756 2.8 8.4 1.0
O c:HOH423 2.8 8.4 1.0
O c:GLY235 3.0 8.4 1.0
O c:GLY234 3.7 8.4 1.0
C c:GLY237 3.8 13.8 1.0
O a:HOH8297 3.8 8.4 1.0
O c:THR223 3.9 8.4 1.0
C c:GLY235 4.2 8.4 1.0
O c:HOH431 4.2 5.5 1.0
C c:GLY234 4.3 8.4 1.0
OP2 a:A2590 4.3 8.4 1.0
CA c:ARG238 4.6 16.4 1.0
OP1 a:A2590 4.6 8.4 1.0
N c:GLY237 4.6 13.8 1.0
N c:ARG238 4.6 16.4 1.0
O a:HOH8367 4.7 10.2 1.0
CA c:GLY237 4.8 13.8 1.0
N c:GLY235 4.8 8.4 1.0
CA c:GLY235 4.9 8.4 1.0
O a:HOH8538 4.9 8.4 1.0
O a:HOH8338 5.0 8.4 1.0

Potassium binding site 7 out of 7 in 8g6x

Go back to Potassium Binding Sites List in 8g6x
Potassium binding site 7 out of 7 in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe within 5.0Å range:
probe atom residue distance (Å) B Occ
e:K301

b:31.2
occ:1.00
NH2 e:ARG61 3.2 8.4 1.0
N e:ARG61 3.3 8.4 1.0
CB e:ARG61 3.8 8.4 1.0
CA e:TRP60 4.0 8.4 1.0
CB e:TRP60 4.0 8.4 1.0
CG e:ARG61 4.0 8.4 1.0
CD e:ARG61 4.1 8.4 1.0
CG2 e:THR65 4.1 8.4 1.0
C e:TRP60 4.1 8.4 1.0
CA e:ARG61 4.2 8.4 1.0
CZ e:ARG61 4.3 8.4 1.0
NE e:ARG61 4.6 8.4 1.0

Reference:

C.Majumdar, J.H.D.Cate. Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh-Trnaphe To Be Published.
Page generated: Tue Apr 11 14:51:30 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy