Atomistry » Potassium » PDB 8eqi-8g7l » 8f1d
Atomistry »
  Potassium »
    PDB 8eqi-8g7l »
      8f1d »

Potassium in PDB 8f1d: Voltage-Gated Potassium Channel KV3.1 Apo

Other elements in 8f1d:

The structure of Voltage-Gated Potassium Channel KV3.1 Apo also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Voltage-Gated Potassium Channel KV3.1 Apo (pdb code 8f1d). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Voltage-Gated Potassium Channel KV3.1 Apo, PDB code: 8f1d:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 8f1d

Go back to Potassium Binding Sites List in 8f1d
Potassium binding site 1 out of 4 in the Voltage-Gated Potassium Channel KV3.1 Apo


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Voltage-Gated Potassium Channel KV3.1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K603

b:115.1
occ:1.00
 O D:TYR403 2.7 99.9 1.0
O A:TYR403 2.7 100.2 1.0
O B:TYR403 2.7 99.0 1.0
O C:TYR403 2.7 99.6 1.0
O D:GLY402 3.3 86.4 1.0
O C:GLY402 3.3 86.4 1.0
O A:GLY402 3.3 86.3 1.0
O B:GLY402 3.3 86.1 1.0
C D:TYR403 3.6 86.1 1.0
C A:TYR403 3.6 85.7 1.0
C C:TYR403 3.6 85.3 1.0
C B:TYR403 3.6 84.8 1.0
K A:K604 4.0 105.3 1.0
CA D:TYR403 4.3 80.0 1.0
CA A:TYR403 4.3 80.1 1.0
CA C:TYR403 4.3 79.5 1.0
CA B:TYR403 4.3 79.2 1.0
N D:GLY404 4.4 92.1 1.0
N A:GLY404 4.4 90.8 1.0
N C:GLY404 4.4 91.6 1.0
N B:GLY404 4.4 91.0 1.0
C D:GLY402 4.4 81.0 1.0
C A:GLY402 4.4 80.8 1.0
C C:GLY402 4.4 81.2 1.0
C B:GLY402 4.4 80.2 1.0
CA D:GLY404 4.6 95.5 1.0
CA A:GLY404 4.6 94.5 1.0
CA C:GLY404 4.6 95.0 1.0
CA B:GLY404 4.6 94.5 1.0
N D:TYR403 4.9 83.7 1.0
N A:TYR403 4.9 83.6 1.0
N C:TYR403 4.9 83.8 1.0
N B:TYR403 4.9 82.9 1.0

Potassium binding site 2 out of 4 in 8f1d

Go back to Potassium Binding Sites List in 8f1d
Potassium binding site 2 out of 4 in the Voltage-Gated Potassium Channel KV3.1 Apo


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Voltage-Gated Potassium Channel KV3.1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K604

b:105.3
occ:1.00
 O C:LEU401 2.7 85.0 1.0
O A:LEU401 2.7 84.6 1.0
O B:LEU401 2.7 84.7 1.0
O D:LEU401 2.7 84.5 1.0
O C:GLY402 2.8 86.4 1.0
O A:GLY402 2.8 86.3 1.0
O B:GLY402 2.8 86.1 1.0
O D:GLY402 2.8 86.4 1.0
K A:K605 2.8 85.3 1.0
C A:GLY402 3.7 80.8 1.0
C B:GLY402 3.7 80.2 1.0
C D:GLY402 3.7 81.0 1.0
C C:GLY402 3.7 81.2 1.0
C A:LEU401 3.9 80.7 1.0
C B:LEU401 3.9 80.7 1.0
C C:LEU401 3.9 80.9 1.0
C D:LEU401 3.9 80.5 1.0
K A:K603 4.0 115.1 1.0
CA A:GLY402 4.1 84.0 1.0
CA C:GLY402 4.1 84.3 1.0
CA D:GLY402 4.1 83.6 1.0
CA B:GLY402 4.1 82.6 1.0
N C:GLY402 4.5 82.8 1.0
N D:GLY402 4.5 82.2 1.0
N A:GLY402 4.5 83.4 1.0
N B:GLY402 4.5 82.1 1.0
N C:TYR403 4.8 83.8 1.0
N D:TYR403 4.8 83.7 1.0
N A:TYR403 4.8 83.6 1.0
N B:TYR403 4.8 82.9 1.0

Potassium binding site 3 out of 4 in 8f1d

Go back to Potassium Binding Sites List in 8f1d
Potassium binding site 3 out of 4 in the Voltage-Gated Potassium Channel KV3.1 Apo


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Voltage-Gated Potassium Channel KV3.1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K605

b:85.3
occ:1.00
 O C:LEU401 2.8 85.0 1.0
O A:LEU401 2.8 84.6 1.0
O B:LEU401 2.8 84.7 1.0
O D:LEU401 2.8 84.5 1.0
K A:K604 2.8 105.3 1.0
O C:THR400 3.0 93.0 1.0
O A:THR400 3.0 94.4 1.0
O B:THR400 3.0 93.2 1.0
O D:THR400 3.0 93.3 1.0
K A:K606 3.5 110.6 1.0
C A:LEU401 3.7 80.7 1.0
C B:LEU401 3.7 80.7 1.0
C C:LEU401 3.7 80.9 1.0
C D:LEU401 3.7 80.5 1.0
C C:THR400 4.0 83.4 1.0
C D:THR400 4.0 83.5 1.0
C A:THR400 4.0 84.6 1.0
C B:THR400 4.0 83.7 1.0
CA C:LEU401 4.1 78.2 1.0
CA D:LEU401 4.1 77.8 1.0
CA A:LEU401 4.1 78.9 1.0
CA B:LEU401 4.1 78.1 1.0
N A:LEU401 4.5 72.7 1.0
N C:LEU401 4.5 71.9 1.0
N D:LEU401 4.5 71.9 1.0
N B:LEU401 4.5 71.9 1.0
N C:GLY402 4.7 82.8 1.0
N D:GLY402 4.7 82.2 1.0
N A:GLY402 4.7 83.4 1.0
N B:GLY402 4.7 82.1 1.0
O A:GLY402 5.0 86.3 1.0
O B:GLY402 5.0 86.1 1.0
O D:GLY402 5.0 86.4 1.0
O C:GLY402 5.0 86.4 1.0

Potassium binding site 4 out of 4 in 8f1d

Go back to Potassium Binding Sites List in 8f1d
Potassium binding site 4 out of 4 in the Voltage-Gated Potassium Channel KV3.1 Apo


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Voltage-Gated Potassium Channel KV3.1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K606

b:110.6
occ:1.00
 O C:THR400 2.8 93.0 1.0
O A:THR400 2.8 94.4 1.0
O B:THR400 2.8 93.2 1.0
O D:THR400 2.8 93.3 1.0
OG1 A:THR400 3.3 92.9 1.0
OG1 D:THR400 3.3 92.2 1.0
OG1 C:THR400 3.3 92.7 1.0
OG1 B:THR400 3.3 92.6 1.0
K A:K605 3.5 85.3 1.0
CB A:THR400 3.8 88.7 1.0
CB C:THR400 3.8 88.4 1.0
CB D:THR400 3.8 88.3 1.0
CB B:THR400 3.8 88.4 1.0
C C:THR400 3.9 83.4 1.0
C A:THR400 3.9 84.6 1.0
C B:THR400 3.9 83.7 1.0
C D:THR400 3.9 83.5 1.0
CA C:THR400 4.5 87.1 1.0
CA A:THR400 4.5 87.2 1.0
CA B:THR400 4.5 86.6 1.0
CA D:THR400 4.5 86.7 1.0
N A:LEU401 5.0 72.7 1.0
N C:LEU401 5.0 71.9 1.0
N D:LEU401 5.0 71.9 1.0
N B:LEU401 5.0 71.9 1.0
O A:THR399 5.0 94.0 1.0
O D:THR399 5.0 93.6 1.0
O B:THR399 5.0 94.3 1.0
O C:THR399 5.0 93.4 1.0

Reference:

Y.T.Chen, M.R.Hong, X.J.Zhang, J.Kostas, Y.Li, R.L.Kraus, V.P.Santarelli, D.Wang, Y.Gomez-Llorente, A.Brooun, C.Strickland, S.M.Soisson, D.J.Klein, A.T.Ginnetti, M.J.Marino, S.J.Stachel, A.Ishchenko. Identification and Structural and Biophysical Characterization of A Positive Modulator of Human KV3.1 Channels. Proc.Natl.Acad.Sci.Usa V. 120 29120 2023.
ISSN: ESSN 1091-6490
PubMed: 37812700
DOI: 10.1073/PNAS.2220029120
Page generated: Mon Aug 12 23:39:19 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy