Potassium in PDB 8cgk: Lincomycin and Avilamycin Bound to the 50S Subunit

The structure of Lincomycin and Avilamycin Bound to the 50S Subunit also contains other interesting chemical elements:

Zinc	(Zn)	1 atom
Magnesium	(Mg)	260 atoms
Chlorine	(Cl)	2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 81;

Binding sites:

The binding sites of Potassium atom in the Lincomycin and Avilamycin Bound to the 50S Subunit (pdb code 8cgk). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 81 binding sites of Potassium where determined in the Lincomycin and Avilamycin Bound to the 50S Subunit, PDB code: 8cgk:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 81 in the Lincomycin and Avilamycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Lincomycin and Avilamycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:K3064 b:17.2 occ:1.00 O3' a:G1022 2.7 18.2 1.0 OP2 a:U1023 2.8 19.0 1.0 N7 a:G1024 2.8 15.3 1.0 O a:HOH7997 2.8 26.4 1.0 O2' a:G1022 2.8 18.4 1.0 N3 a:G1025 2.9 15.4 1.0 O6 a:G1024 3.0 15.6 1.0 O2' a:G1025 3.2 18.0 1.0 C2 a:G1025 3.3 15.4 1.0 P a:U1023 3.4 17.8 1.0 C4 a:G1025 3.5 15.6 1.0 N2 a:G1025 3.5 16.2 1.0 C5 a:G1024 3.5 14.8 1.0 C6 a:G1024 3.6 14.0 1.0 C2' a:G1022 3.7 18.4 1.0 C3' a:G1022 3.8 18.6 1.0 MG a:MG3222 3.9 18.7 1.0 O a:HOH5429 3.9 21.1 1.0 C8 a:G1024 4.0 15.3 1.0 N9 a:G1025 4.1 16.3 1.0 C2' a:G1025 4.1 18.7 1.0 N1 a:G1025 4.1 14.9 1.0 C1' a:G1022 4.2 18.1 1.0 C1' a:G1025 4.3 17.9 1.0 C5 a:G1025 4.4 15.9 1.0 OP2 a:C1135 4.4 24.8 1.0 O5' a:U1023 4.4 18.3 1.0 OP1 a:U1023 4.4 18.6 1.0 C6 a:G1025 4.7 15.0 1.0 OP2 a:G1024 4.8 18.8 1.0 C4 a:G1024 4.8 14.8 1.0 C4' a:G1022 5.0 18.9 1.0 N1 a:G1024 5.0 14.5 1.0

Potassium binding site 2 out of 81 in the Lincomycin and Avilamycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Lincomycin and Avilamycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:K3065 b:22.8 occ:1.00 O6 a:G559 2.7 16.5 1.0 O4 a:U534 2.8 16.5 1.0 O a:HOH3455 2.9 19.7 1.0 O6 a:G533 2.9 15.3 1.0 O4 a:U558 2.9 18.3 1.0 O a:HOH4391 3.3 39.3 1.0 O6 a:G535 3.4 16.5 1.0 C4 a:U558 3.5 17.6 1.0 C4 a:U534 3.7 14.9 1.0 N3 a:U558 3.7 17.1 1.0 N3 a:U534 3.7 14.9 1.0 N4 a:C560 3.8 13.2 1.0 C6 a:G559 3.8 14.8 1.0 C6 a:G533 3.9 13.3 1.0 N7 a:G559 4.2 15.6 1.0 C6 a:G535 4.3 15.7 1.0 O a:HOH6619 4.3 33.9 1.0 C5 a:G559 4.4 15.3 1.0 C5 a:U558 4.6 17.8 1.0 C4 a:C560 4.6 13.8 1.0 C5 a:G533 4.6 13.0 1.0 N1 a:G533 4.7 12.8 1.0 O a:HOH8745 4.8 35.5 1.0 O a:HOH8602 4.8 25.9 1.0 C2 a:U558 4.8 17.4 1.0 N7 a:G533 4.8 13.4 1.0 N1 a:G535 5.0 15.9 1.0

Potassium binding site 3 out of 81 in the Lincomycin and Avilamycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Lincomycin and Avilamycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:K3066 b:24.2 occ:1.00 O4 a:U1242 2.7 21.6 1.0 O4 a:U1203 2.7 21.0 1.0 O6 a:G1202 2.8 19.3 1.0 OP2 a:A1241 2.8 29.1 1.0 O a:HOH8249 2.9 26.9 1.0 O a:HOH7595 2.9 21.8 1.0 N6 a:A1204 3.4 21.4 1.0 C4 a:U1203 3.6 19.5 1.0 O a:HOH6291 3.6 37.7 1.0 N3 a:U1203 3.7 19.1 1.0 C4 a:U1242 3.8 21.9 1.0 C6 a:G1202 3.8 17.8 1.0 N4 a:C1243 4.0 19.0 1.0 P a:A1241 4.0 29.2 1.0 MG a:MG3180 4.0 26.5 1.0 C6 a:A1204 4.0 21.4 1.0 N1 a:A1204 4.3 22.0 1.0 OP1 a:A1241 4.3 33.4 1.0 O a:HOH3891 4.3 23.4 1.0 C5 a:U1242 4.3 23.4 1.0 N7 a:G1202 4.4 17.4 1.0 C5 a:G1202 4.4 17.8 1.0 O a:HOH9162 4.6 56.7 1.0 O a:HOH9218 4.6 29.3 1.0 O4 a:U1201 4.8 19.6 1.0 N1 a:G1202 4.9 18.3 1.0 N3 a:U1242 4.9 21.6 1.0 O5' a:A1241 4.9 29.4 1.0 C5 a:U1203 5.0 20.5 1.0 C5 a:A1204 5.0 22.5 1.0 N6 a:A1244 5.0 16.6 1.0

Potassium binding site 4 out of 81 in the Lincomycin and Avilamycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Lincomycin and Avilamycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:K3067 b:19.9 occ:1.00 O6 a:G1288 2.6 18.2 1.0 O a:HOH9139 2.6 28.1 1.0 O2 a:U1326 2.6 15.4 1.0 O m:GLY105 2.8 20.2 1.0 O a:HOH8967 2.9 30.5 1.0 O a:HOH7219 2.9 19.1 1.0 O4' a:A1327 2.9 17.2 1.0 N6 a:A1287 3.4 15.6 1.0 O2' a:U1326 3.5 16.1 1.0 C1' a:A1327 3.6 17.2 1.0 C m:GLY105 3.8 19.8 1.0 C2 a:U1326 3.8 14.4 1.0 C6 a:G1288 3.8 16.8 1.0 C2' a:U1326 3.9 15.2 1.0 O a:HOH7179 4.0 29.6 1.0 CA m:GLY105 4.1 19.8 1.0 C4' a:A1327 4.1 17.9 1.0 N9 a:A1327 4.1 15.8 1.0 C1' a:U1326 4.4 14.9 1.0 C8 a:A1327 4.4 15.2 1.0 C6 a:A1287 4.5 15.8 1.0 O a:HOH7917 4.5 40.8 1.0 C5' a:A1327 4.6 17.4 1.0 N1 a:G1288 4.6 16.1 1.0 N1 a:U1326 4.7 14.5 1.0 N3 a:U1326 4.7 14.2 1.0 C5 a:G1288 4.9 15.5 1.0 C2' a:A1327 4.9 17.9 1.0 C4 a:A1327 4.9 15.4 1.0

Potassium binding site 5 out of 81 in the Lincomycin and Avilamycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Lincomycin and Avilamycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:K3068 b:20.9 occ:1.00 O4 a:U1397 2.8 17.2 1.0 O2' a:U1602 2.9 16.8 1.0 O2' a:U1394 2.9 18.1 1.0 O5' a:A1395 2.9 20.2 1.0 O3' a:U1602 3.0 17.4 1.0 OP1 a:A1395 3.0 19.4 1.0 OP1 a:A1603 3.0 17.4 1.0 O3' a:U1394 3.1 18.5 1.0 P a:A1395 3.3 17.4 1.0 C5' a:A1603 3.6 16.0 1.0 P a:A1603 3.6 16.1 1.0 C4 a:U1397 3.9 15.4 1.0 C2' a:U1394 3.9 18.4 1.0 C2' a:U1602 3.9 16.4 1.0 C3' a:U1602 4.0 17.0 1.0 O a:HOH4274 4.0 30.8 1.0 C3' a:U1394 4.0 17.6 1.0 O5' a:A1603 4.1 16.4 1.0 C5' a:A1395 4.2 21.2 1.0 MG a:MG3203 4.2 16.9 1.0 C1' a:U1602 4.3 15.5 1.0 OP1 a:G1341 4.3 15.0 1.0 N3 a:U1397 4.4 15.2 1.0 O a:HOH5273 4.4 20.1 1.0 O a:HOH7849 4.5 33.1 1.0 OP2 a:G1341 4.6 15.9 1.0 C4' a:A1395 4.6 21.8 1.0 O2 a:U1602 4.7 14.7 1.0 OP2 a:A1395 4.8 20.1 1.0 C4' a:U1394 4.8 17.6 1.0 P a:G1341 4.9 14.1 1.0 C4' a:A1603 4.9 15.8 1.0 OP2 a:C1604 4.9 17.0 1.0 OP2 a:A1603 5.0 18.0 1.0 C5 a:U1397 5.0 15.5 1.0

Potassium binding site 6 out of 81 in the Lincomycin and Avilamycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Lincomycin and Avilamycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:K3069 b:31.2 occ:1.00 OP1 a:C130 2.6 26.5 1.0 N1 a:A1598 2.8 21.2 1.0 O2' a:C1348 2.8 22.3 1.0 O a:HOH6822 2.9 33.2 1.0 O3' a:C129 2.9 23.4 1.0 O2 a:C1348 3.0 23.0 1.0 P a:C130 3.4 23.3 1.0 O a:HOH8373 3.4 37.3 1.0 O2 a:U1599 3.4 21.4 1.0 C2 a:A1598 3.5 21.6 1.0 C2' a:C1348 3.5 21.8 1.0 C1' a:C1348 3.7 20.9 1.0 C6 a:A1598 3.9 20.4 1.0 N6 a:A1598 4.1 20.6 1.0 C2 a:C1348 4.1 21.2 1.0 C3' a:C129 4.2 21.3 1.0 C2 a:U1599 4.2 20.2 1.0 C4' a:C129 4.4 21.7 1.0 OP2 a:C130 4.4 24.0 1.0 N1 a:C1348 4.5 20.9 1.0 O5' a:C130 4.5 22.9 1.0 C5' a:C130 4.6 23.1 1.0 C5' a:C129 4.7 22.2 1.0 O a:HOH4306 4.8 35.2 1.0 O2' a:C129 4.8 20.3 1.0 N3 a:U1599 4.8 20.0 1.0 N3 a:A1598 4.8 21.6 1.0 O4' a:C1348 4.8 21.9 1.0 C2 a:A1347 4.8 19.3 1.0 N1 a:A1347 4.9 19.3 1.0 O a:HOH6453 5.0 40.6 1.0 N1 a:U1599 5.0 20.6 1.0 C1' a:U1599 5.0 21.2 1.0

Potassium binding site 7 out of 81 in the Lincomycin and Avilamycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Lincomycin and Avilamycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:K3070 b:29.2 occ:1.00 O4 a:U1599 2.8 21.4 1.0 O6 a:G1346 2.8 20.0 1.0 OP1 a:U1344 2.8 22.2 1.0 O a:HOH5573 2.9 30.3 1.0 N6 a:A1347 3.1 20.9 1.0 O a:HOH4045 3.3 27.8 1.0 O a:HOH8557 3.4 43.5 1.0 O a:HOH8726 3.6 34.0 1.0 O a:HOH6208 3.8 31.3 1.0 N4 a:C1600 3.9 16.9 1.0 C6 a:G1346 4.0 19.3 1.0 P a:U1344 4.0 19.3 1.0 C4 a:U1599 4.0 19.9 1.0 O3' a:G1343 4.0 20.6 1.0 N4 a:C1345 4.1 17.4 1.0 C6 a:A1347 4.1 19.1 1.0 O a:HOH8003 4.4 24.2 1.0 O2' a:A1342 4.5 16.7 1.0 N7 a:G1346 4.7 20.5 1.0 C5 a:G1346 4.7 20.1 1.0 N1 a:A1347 4.7 19.3 1.0 N3 a:U1599 4.8 20.0 1.0 OP2 a:A1598 4.9 25.1 1.0 OP2 a:U1344 5.0 21.1 1.0 C4 a:C1345 5.0 17.8 1.0 C5 a:U1599 5.0 20.6 1.0

Potassium binding site 8 out of 81 in the Lincomycin and Avilamycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Lincomycin and Avilamycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:K3071 b:33.7 occ:1.00 O a:HOH6316 2.8 33.6 1.0 O a:HOH7804 2.8 33.5 1.0 O6 a:G326 2.8 25.6 1.0 O2' a:A332 2.8 27.6 1.0 O a:HOH9160 2.9 42.5 1.0 O6 a:G327 2.9 23.4 1.0 C2' a:A332 3.6 27.4 1.0 C6 a:G327 3.8 22.1 1.0 C6 a:G326 3.8 23.5 1.0 N4 a:C335 4.0 21.1 1.0 N7 a:G327 4.1 24.6 1.0 N4 a:C336 4.2 22.9 1.0 C5 a:G327 4.3 23.5 1.0 N7 a:G326 4.3 26.8 1.0 C5 a:G326 4.4 26.0 1.0 OP1 a:C334 4.6 26.5 1.0 C3' a:A332 4.6 28.5 1.0 C8 a:A332 4.7 24.1 1.0 C1' a:A332 4.8 25.6 1.0 OP2 a:C334 4.9 26.8 1.0 N1 a:G326 4.9 23.6 1.0 N1 a:G327 4.9 21.3 1.0 OP2 a:A332 4.9 33.1 1.0 N9 a:A332 5.0 24.7 1.0

Potassium binding site 9 out of 81 in the Lincomycin and Avilamycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Lincomycin and Avilamycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:K3072 b:37.2 occ:1.00 O a:HOH4714 2.6 34.9 1.0 O6 a:G313 2.6 32.8 1.0 O4 a:U304 2.7 36.0 1.0 O6 a:G312 2.9 30.2 1.0 O a:HOH5770 2.9 38.0 1.0 O6 a:G303 3.4 34.6 1.0 C4 a:U304 3.6 36.0 1.0 C6 a:G312 3.6 28.0 1.0 N3 a:U304 3.7 36.4 1.0 C6 a:G313 3.7 30.8 1.0 N4 a:C305 3.9 32.3 1.0 O2' a:A310 4.1 31.5 1.0 N4 a:C314 4.2 34.9 1.0 N7 a:G313 4.2 34.4 1.0 C5 a:G312 4.2 27.4 1.0 C5 a:G313 4.3 32.9 1.0 C6 a:G303 4.3 34.7 1.0 N7 a:G312 4.4 27.0 1.0 N1 a:G312 4.5 28.7 1.0 C4 a:C305 4.7 32.6 1.0 OP2 a:A311 4.9 32.2 1.0 N1 a:G313 4.9 32.1 1.0 N3 a:C305 5.0 34.3 1.0 C5 a:U304 5.0 36.2 1.0 C2 a:U304 5.0 37.0 1.0

Potassium binding site 10 out of 81 in the Lincomycin and Avilamycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Lincomycin and Avilamycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:K3073 b:23.9 occ:1.00 O a:HOH4957 2.6 30.4 1.0 O a:HOH9132 2.7 28.9 1.0 OP2 a:G971 2.7 15.2 1.0 N7 a:G974 2.9 13.2 1.0 O6 a:G989 2.9 15.9 1.0 O6 a:G974 3.4 13.7 1.0 O a:HOH7211 3.5 16.5 1.0 C5 a:G974 3.6 12.5 1.0 C6 a:G989 3.7 13.9 1.0 C6 a:G974 3.8 12.4 1.0 P a:G971 3.9 12.3 1.0 C8 a:G974 3.9 12.5 1.0 O a:HOH7807 4.1 16.0 1.0 OP1 a:G971 4.2 13.8 1.0 N1 a:G989 4.3 13.2 1.0 O a:HOH5316 4.3 11.7 1.0 O a:HOH6264 4.5 25.6 1.0 C5 a:G989 4.6 14.1 1.0 O3' a:U970 4.6 13.0 1.0 O5' a:U970 4.7 16.4 1.0 O a:HOH6956 4.7 19.4 1.0 C4 a:G974 4.8 12.1 1.0 OP1 a:U970 4.9 21.5 1.0 N7 a:G989 4.9 14.5 1.0 N9 a:G974 5.0 12.5 1.0

H.Paternoga, C.Crowe-Mcauliffe, L.V.Bock, T.O.Koller, M.Morici, B.Beckert, A.G.Myasnikov, H.Grubmueller, J.Novacek, D.N.Wilson. Structural Conservation of Antibiotic Interaction with Ribosomes To Be Published.