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Potassium in PDB 8cam: Evernimicin Bound to the 50S Subunit

Other elements in 8cam:

The structure of Evernimicin Bound to the 50S Subunit also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Magnesium (Mg) 246 atoms
Chlorine (Cl) 2 atoms

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 72;

Binding sites:

The binding sites of Potassium atom in the Evernimicin Bound to the 50S Subunit (pdb code 8cam). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 72 binding sites of Potassium where determined in the Evernimicin Bound to the 50S Subunit, PDB code: 8cam:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 72 in 8cam

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Potassium binding site 1 out of 72 in the Evernimicin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Evernimicin Bound to the 50S Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K3238

b:26.0
occ:1.00
O a:HOH6078 2.6 33.8 1.0
O4 a:U193 2.8 25.0 1.0
O a:HOH5129 2.8 24.7 1.0
OP2 a:C192 2.8 23.9 1.0
O a:HOH3899 3.0 23.1 1.0
O4 a:U202 3.0 23.6 1.0
O a:HOH7597 3.2 31.6 1.0
C4 a:U193 3.8 24.4 1.0
O a:HOH8171 3.8 23.3 1.0
C4 a:U202 4.0 23.5 1.0
P a:C192 4.0 21.5 1.0
O a:HOH8262 4.1 55.4 1.0
N3 a:U202 4.1 23.9 1.0
N1 a:A203 4.1 25.7 1.0
C5 a:U193 4.2 24.3 1.0
C2 a:A203 4.2 24.7 1.0
OP1 a:C192 4.3 22.2 1.0
OP2 a:A199 4.3 27.3 1.0
MG a:MG3143 4.4 22.4 1.0
O a:HOH5958 4.5 45.1 1.0
O6 a:G194 4.6 25.2 1.0
N4 a:C201 4.7 24.4 1.0
OP1 a:A199 4.7 26.8 1.0
O3' a:A191 5.0 21.6 1.0
N3 a:U193 5.0 22.6 1.0

Potassium binding site 2 out of 72 in 8cam

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Potassium binding site 2 out of 72 in the Evernimicin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Evernimicin Bound to the 50S Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K3239

b:30.0
occ:1.00
O a:HOH7169 2.7 37.4 1.0
N7 a:G1024 2.7 29.9 1.0
O3' a:G1022 2.8 31.0 1.0
OP2 a:U1023 2.8 31.5 1.0
O2' a:G1022 2.9 30.9 1.0
N3 a:G1025 2.9 30.1 1.0
O6 a:G1024 3.0 30.9 1.0
O2' a:G1025 3.0 29.9 1.0
C2 a:G1025 3.2 29.1 1.0
P a:U1023 3.3 32.2 1.0
C5 a:G1024 3.5 28.9 1.0
N2 a:G1025 3.5 28.9 1.0
C4 a:G1025 3.5 29.7 1.0
C6 a:G1024 3.5 29.6 1.0
C3' a:G1022 3.8 30.6 1.0
C2' a:G1022 3.8 31.7 1.0
C8 a:G1024 3.9 29.0 1.0
N1 a:G1025 4.0 29.3 1.0
C2' a:G1025 4.0 32.1 1.0
N9 a:G1025 4.1 30.6 1.0
MG a:MG3048 4.1 33.1 1.0
O a:HOH4469 4.2 35.7 1.0
C1' a:G1022 4.3 31.3 1.0
C5 a:G1025 4.3 29.5 1.0
C1' a:G1025 4.4 31.7 1.0
O5' a:U1023 4.4 31.8 1.0
OP2 a:C1135 4.4 35.7 1.0
OP1 a:U1023 4.4 35.8 1.0
C6 a:G1025 4.6 30.3 1.0
C4 a:G1024 4.8 28.8 1.0
N1 a:G1024 4.9 29.8 1.0
OP2 a:G1024 4.9 35.6 1.0
N9 a:G1024 5.0 30.3 1.0
C4' a:G1022 5.0 32.9 1.0

Potassium binding site 3 out of 72 in 8cam

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Potassium binding site 3 out of 72 in the Evernimicin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Evernimicin Bound to the 50S Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K3240

b:47.7
occ:1.00
O4 a:U304 2.6 46.8 1.0
O6 a:G313 2.6 45.8 1.0
O6 a:G312 2.8 41.2 1.0
O a:HOH3970 2.9 49.3 1.0
O6 a:G303 3.4 45.8 1.0
C4 a:U304 3.5 48.4 1.0
C6 a:G312 3.5 36.9 1.0
N4 a:C305 3.7 46.4 1.0
N3 a:U304 3.7 48.1 1.0
C6 a:G313 3.7 44.5 1.0
O2' a:A310 4.0 46.8 1.0
N4 a:C314 4.1 46.8 1.0
C5 a:G312 4.2 37.8 1.0
N7 a:G313 4.2 45.3 1.0
C6 a:G303 4.4 46.1 1.0
C5 a:G313 4.4 44.1 1.0
N1 a:G312 4.4 38.2 1.0
N7 a:G312 4.4 35.0 1.0
C4 a:C305 4.5 47.0 1.0
N3 a:C305 4.7 49.3 1.0
N1 a:G313 4.9 44.6 1.0
C4 a:C314 4.9 46.1 1.0
C5 a:U304 4.9 48.8 1.0
OP2 a:A311 4.9 46.4 1.0
O a:HOH7062 5.0 58.6 1.0
C2 a:U304 5.0 50.2 1.0

Potassium binding site 4 out of 72 in 8cam

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Potassium binding site 4 out of 72 in the Evernimicin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Evernimicin Bound to the 50S Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K3241

b:27.2
occ:1.00
O a:HOH7609 2.6 31.5 1.0
O a:HOH3705 2.7 26.9 1.0
OP2 a:A470 2.7 25.0 1.0
O e:THR53 2.8 31.5 1.0
O a:HOH8451 2.9 34.6 1.0
O4' a:G452 2.9 25.5 1.0
OP1 a:A470 3.2 25.0 1.0
P a:A470 3.4 25.0 1.0
O e:HOH406 3.5 40.1 1.0
C4' a:G452 3.7 25.5 1.0
C e:THR53 3.8 29.7 1.0
O a:HOH5316 3.9 27.5 1.0
C1' a:G452 3.9 25.1 1.0
C5' a:G452 4.1 26.3 1.0
O3' a:G469 4.2 25.6 1.0
CA e:GLY54 4.4 32.2 1.0
N e:GLY54 4.4 30.9 1.0
O6 a:G458 4.5 28.3 1.0
CB e:THR53 4.6 30.1 1.0
OP1 a:G469 4.6 23.9 1.0
O a:HOH3510 4.6 27.9 1.0
N1 a:G458 4.7 23.8 1.0
N9 a:G452 4.7 23.7 1.0
O5' a:G469 4.7 22.1 1.0
CG2 e:THR53 4.7 30.5 1.0
CA e:THR53 4.7 29.1 1.0
OP2 a:G469 4.8 26.0 1.0
O5' a:A470 4.9 24.5 1.0
C3' a:G469 4.9 25.6 1.0
P a:G469 4.9 24.1 1.0
C8 a:G452 4.9 24.8 1.0
C2' a:G452 4.9 25.3 1.0
O5' a:G452 4.9 26.6 1.0
O2' a:G452 5.0 24.9 1.0

Potassium binding site 5 out of 72 in 8cam

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Potassium binding site 5 out of 72 in the Evernimicin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Evernimicin Bound to the 50S Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K3242

b:24.9
occ:1.00
O6 a:G2447 2.6 24.6 1.0
O6 a:G2061 2.7 26.0 1.0
N7 a:G2447 2.8 24.7 1.0
O4' a:C2501 2.9 24.9 1.0
O a:HOH7128 2.9 31.9 1.0
O2 a:PSU2504 3.0 32.3 1.0
N7 a:G2061 3.1 28.9 1.0
O2 a:C2501 3.2 23.0 1.0
C6 a:G2447 3.3 23.8 1.0
C5 a:G2447 3.4 25.0 1.0
C6 a:G2061 3.4 27.8 1.0
C5 a:G2061 3.6 28.3 1.0
C1' a:C2501 3.6 25.2 1.0
C2 a:C2501 3.7 22.6 1.0
C4' a:C2501 3.8 24.4 1.0
C2 a:PSU2504 3.8 30.3 1.0
N1 a:C2501 3.9 22.9 1.0
N1 a:PSU2504 3.9 30.8 1.0
N6 a:A2451 4.0 27.9 1.0
C8 a:G2447 4.0 25.4 1.0
C5' a:C2501 4.1 23.4 1.0
C8 a:G2061 4.3 28.6 1.0
N3 a:C2501 4.6 22.1 1.0
N1 a:G2447 4.6 22.8 1.0
C4 a:G2447 4.7 23.5 1.0
O5' a:C2501 4.7 23.4 1.0
N1 a:G2061 4.7 28.7 1.0
C2' a:U2500 4.8 24.7 1.0
C4 a:G2061 4.9 29.6 1.0
C6 a:C2501 4.9 22.1 1.0

Potassium binding site 6 out of 72 in 8cam

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Potassium binding site 6 out of 72 in the Evernimicin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Evernimicin Bound to the 50S Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K3243

b:42.4
occ:1.00
N1 a:A1598 2.7 43.0 1.0
O2' a:C1348 2.7 37.4 1.0
OP1 a:C130 2.9 43.0 1.0
O a:HOH3464 2.9 41.2 1.0
O3' a:C129 3.0 37.2 1.0
O2 a:C1348 3.0 41.2 1.0
C2 a:A1598 3.4 41.8 1.0
P a:C130 3.5 41.9 1.0
C2' a:C1348 3.5 36.4 1.0
O a:HOH5714 3.6 49.9 1.0
C1' a:C1348 3.7 36.0 1.0
O2 a:U1599 3.7 37.7 1.0
C6 a:A1598 3.8 43.1 1.0
N6 a:A1598 3.9 42.7 1.0
C2 a:C1348 4.1 38.5 1.0
C3' a:C129 4.2 36.1 1.0
C4' a:C129 4.4 36.6 1.0
C2 a:U1599 4.4 38.3 1.0
N1 a:C1348 4.4 35.6 1.0
OP2 a:C130 4.5 42.4 1.0
C5' a:C129 4.6 38.5 1.0
O5' a:C130 4.7 38.4 1.0
C2 a:A1347 4.7 34.2 1.0
C5' a:C130 4.7 38.0 1.0
O4' a:C1348 4.7 36.8 1.0
N3 a:A1598 4.8 42.4 1.0
O2' a:C129 4.8 38.1 1.0
N1 a:A1347 4.9 36.4 1.0
O a:HOH4178 5.0 54.6 1.0
C3' a:C1348 5.0 37.4 1.0

Potassium binding site 7 out of 72 in 8cam

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Potassium binding site 7 out of 72 in the Evernimicin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Evernimicin Bound to the 50S Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K3244

b:37.5
occ:1.00
O4 a:U2245 2.7 31.4 1.0
O6 a:G2436 2.7 24.3 1.0
O6 a:G2437 2.8 23.1 1.0
O a:HOH6764 2.8 38.3 1.0
O a:HOH6690 2.8 42.3 1.0
O a:HOH8233 3.4 54.2 1.0
C6 a:G2436 3.5 21.3 1.0
C4 a:U2245 3.7 28.5 1.0
C6 a:G2437 3.7 21.6 1.0
O a:HOH6394 3.8 51.8 1.0
N7 a:G2437 3.9 24.4 1.0
N4 a:C2072 4.0 21.2 1.0
C5 a:G2436 4.0 22.6 1.0
N7 a:G2436 4.0 24.2 1.0
N6 a:A2071 4.2 20.6 1.0
C5 a:G2437 4.2 22.9 1.0
N3 a:U2245 4.2 27.2 1.0
N1 a:G2436 4.5 21.9 1.0
N4 a:C2073 4.6 22.1 1.0
O4 a:U2438 4.7 24.7 1.0
O4 a:U2244 4.7 25.1 1.0
O a:HOH8407 4.9 45.6 1.0
C5 a:U2245 4.9 29.9 1.0
N1 a:G2437 5.0 21.1 1.0

Potassium binding site 8 out of 72 in 8cam

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Potassium binding site 8 out of 72 in the Evernimicin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Evernimicin Bound to the 50S Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K3245

b:32.6
occ:1.00
O2' a:G2250 2.6 27.2 1.0
OP2 a:A2497 2.6 26.7 1.0
OP2 a:OMG2251 2.7 34.4 1.0
O a:HOH3801 2.8 42.3 1.0
N7 a:A2497 2.8 27.9 1.0
C8 a:A2497 3.2 26.2 1.0
O3' a:G2250 3.4 31.5 1.0
O a:HOH3662 3.4 30.8 1.0
O a:HOH5330 3.5 46.0 1.0
P a:OMG2251 3.6 29.9 1.0
OP2 a:C2496 3.7 25.2 1.0
O5' a:C2496 3.7 23.2 1.0
C2' a:G2250 3.8 27.4 1.0
O a:HOH5690 4.0 27.9 1.0
P a:A2497 4.0 23.8 1.0
P a:C2496 4.0 25.2 1.0
C3' a:G2250 4.1 28.8 1.0
C5 a:A2497 4.2 29.2 1.0
OP1 a:C2496 4.2 27.0 1.0
C3' a:C2496 4.2 24.6 1.0
C1' a:G2250 4.3 26.6 1.0
O3' a:C2496 4.5 23.9 1.0
OP1 a:OMG2251 4.5 31.6 1.0
O5' a:A2497 4.5 25.7 1.0
C5' a:C2496 4.6 24.1 1.0
N9 a:A2497 4.6 26.3 1.0
O5' a:OMG2251 4.9 30.2 1.0
N6 a:A2497 4.9 34.0 1.0
C4' a:C2496 5.0 23.7 1.0
C8 a:G2250 5.0 26.4 1.0

Potassium binding site 9 out of 72 in 8cam

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Potassium binding site 9 out of 72 in the Evernimicin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Evernimicin Bound to the 50S Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K3246

b:49.0
occ:1.00
O a:HOH5326 2.6 50.7 1.0
O4 a:U2865 2.6 46.4 1.0
O2' a:U2849 2.8 40.0 1.0
OP2 a:A2850 3.0 39.6 1.0
OP1 a:A2850 3.2 37.2 1.0
O a:HOH5320 3.3 48.9 1.0
P a:A2850 3.4 40.3 1.0
C4 a:U2865 3.7 45.7 1.0
O2 a:U2866 3.9 40.7 1.0
O3' a:U2849 3.9 36.3 1.0
N3 a:U2866 3.9 41.6 1.0
C2' a:U2849 3.9 38.6 1.0
O a:HOH5032 4.0 59.3 1.0
C5 a:U2865 4.1 47.6 1.0
C2 a:U2866 4.2 39.7 1.0
C3' a:U2849 4.3 38.4 1.0
N7 a:G2864 4.3 50.3 1.0
K a:K3283 4.4 47.1 1.0
O a:HOH5365 4.7 68.8 1.0
N3 a:U2865 4.9 44.9 1.0
C4 a:U2866 4.9 37.4 1.0
O5' a:A2850 4.9 40.7 1.0
O6 a:G2864 5.0 50.9 1.0
O a:HOH6157 5.0 52.9 1.0
OP2 a:G2864 5.0 63.0 1.0

Potassium binding site 10 out of 72 in 8cam

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Potassium binding site 10 out of 72 in the Evernimicin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Evernimicin Bound to the 50S Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
a:K3247

b:32.3
occ:1.00
O6 a:G2544 2.7 27.7 1.0
O a:HOH5618 2.8 34.5 1.0
O a:HOH7160 2.9 35.9 1.0
N3 a:A2542 2.9 27.3 1.0
O a:HOH6253 2.9 45.5 1.0
O4' a:A2542 2.9 27.6 1.0
N7 a:G2543 3.0 28.3 1.0
N7 a:G2544 3.0 28.4 1.0
C6 a:G2544 3.4 27.0 1.0
C5 a:G2544 3.5 28.4 1.0
C1' a:A2542 3.5 27.8 1.0
C2 a:A2542 3.7 26.7 1.0
C5 a:G2543 3.7 27.9 1.0
C4 a:A2542 3.7 27.2 1.0
C8 a:G2543 3.8 28.1 1.0
O6 a:G2543 3.9 26.2 1.0
C4' a:A2542 3.9 28.8 1.0
N9 a:A2542 4.0 27.0 1.0
C6 a:G2543 4.1 26.9 1.0
C8 a:G2544 4.2 28.4 1.0
O a:HOH8504 4.4 47.8 1.0
O3' a:A2542 4.6 31.6 1.0
C4 a:G2543 4.7 27.5 1.0
C3' a:A2542 4.7 29.1 1.0
N1 a:G2544 4.8 26.3 1.0
N9 a:G2543 4.8 27.0 1.0
N4 a:C2521 4.8 25.7 1.0
O6 a:G2545 4.8 27.7 1.0
C4 a:G2544 4.8 26.8 1.0
C2' a:A2542 4.9 29.1 1.0
C5' a:A2542 4.9 29.7 1.0
N1 a:A2542 4.9 25.8 1.0
N3 a:U2519 4.9 23.9 1.0

Reference:

H.Paternoga, C.Crowe-Mcauliffe, L.V.Bock, T.O.Koller, M.Morici, B.Beckert, A.G.Myasnikov, H.Grubmueller, J.Novacek, D.N.Wilson. Structural Conservation of Antibiotic Interaction with Ribosomes To Be Published.
Page generated: Thu Dec 28 06:50:29 2023

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