Atomistry » Potassium » PDB 7zri-8bm0 » 8b5x
Atomistry »
  Potassium »
    PDB 7zri-8bm0 »
      8b5x »

Potassium in PDB 8b5x: Crystal Structure of the SUN1-KASH6 9:6 Complex

Protein crystallography data

The structure of Crystal Structure of the SUN1-KASH6 9:6 Complex, PDB code: 8b5x was solved by B.S.Erlandsen, M.Gurusaran, O.R.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.17 / 1.98
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 133.921, 133.921, 106.581, 90, 90, 120
R / Rfree (%) 17.3 / 21.1

Other elements in 8b5x:

The structure of Crystal Structure of the SUN1-KASH6 9:6 Complex also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the SUN1-KASH6 9:6 Complex (pdb code 8b5x). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Crystal Structure of the SUN1-KASH6 9:6 Complex, PDB code: 8b5x:
Jump to Potassium binding site number: 1; 2; 3;

Potassium binding site 1 out of 3 in 8b5x

Go back to Potassium Binding Sites List in 8b5x
Potassium binding site 1 out of 3 in the Crystal Structure of the SUN1-KASH6 9:6 Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the SUN1-KASH6 9:6 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K901

b:51.6
occ:1.00
 O A:TYR802 2.4 26.8 1.0
O A:HOH1006 2.4 36.8 1.0
O A:VAL684 2.5 33.3 1.0
O A:GLN687 2.6 32.0 1.0
O A:ASP689 3.2 37.4 1.0
C A:TYR802 3.5 29.8 1.0
C A:VAL684 3.6 30.9 1.0
C A:GLN687 3.6 30.8 1.0
O A:ASN694 3.7 29.2 1.0
C A:ASP689 4.2 35.8 1.0
CB A:ARG803 4.2 28.8 1.0
O A:HOH1050 4.2 34.5 1.0
CA A:TYR802 4.3 34.1 1.0
N A:GLN687 4.3 28.9 1.0
CA A:GLN687 4.4 27.9 1.0
N A:ARG803 4.4 26.9 1.0
N A:ASP689 4.4 29.9 1.0
CA A:ARG803 4.4 25.1 1.0
C A:PRO688 4.4 30.4 1.0
CA A:VAL684 4.5 26.8 1.0
CA A:VAL685 4.5 28.3 1.0
CB A:VAL684 4.5 24.4 1.0
N A:VAL685 4.5 26.8 1.0
CG2 A:ILE690 4.5 46.8 1.0
CB A:GLN687 4.5 29.3 1.0
N A:PRO688 4.6 29.7 1.0
C A:VAL685 4.6 27.2 1.0
CG A:ARG803 4.7 30.7 1.0
O A:VAL685 4.8 31.7 1.0
CD A:ARG803 4.8 36.9 1.0
CA A:PRO688 4.8 30.9 1.0
CB A:TYR802 4.8 29.0 1.0
O A:PRO688 4.8 39.3 1.0
CG2 A:VAL684 4.9 27.4 1.0
CA A:ASP689 4.9 30.6 1.0
C A:ASN694 4.9 28.4 1.0

Potassium binding site 2 out of 3 in 8b5x

Go back to Potassium Binding Sites List in 8b5x
Potassium binding site 2 out of 3 in the Crystal Structure of the SUN1-KASH6 9:6 Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of the SUN1-KASH6 9:6 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K901

b:52.4
occ:1.00
 O B:HOH1013 2.3 34.7 1.0
O B:TYR802 2.4 32.1 1.0
O B:VAL684 2.5 35.2 1.0
O B:GLN687 2.6 29.4 1.0
O B:ASP689 2.9 38.8 1.0
C B:TYR802 3.5 31.6 1.0
O B:ASN694 3.6 33.4 1.0
C B:VAL684 3.6 27.7 1.0
C B:GLN687 3.7 30.3 1.0
C B:ASP689 4.1 31.2 1.0
CG2 B:ILE690 4.2 40.0 1.0
CB B:ARG803 4.2 29.4 1.0
CA B:TYR802 4.3 33.1 1.0
N B:ARG803 4.4 28.6 1.0
N B:GLN687 4.4 28.5 1.0
CA B:ARG803 4.4 28.6 1.0
N B:ASP689 4.4 33.9 1.0
CA B:VAL684 4.5 26.2 1.0
CB B:VAL684 4.5 26.2 1.0
CA B:VAL685 4.5 29.6 1.0
C B:PRO688 4.5 35.0 1.0
N B:VAL685 4.5 24.2 1.0
CA B:GLN687 4.5 26.2 1.0
O B:HOH1040 4.5 41.5 1.0
C B:VAL685 4.6 31.1 1.0
N B:PRO688 4.7 29.6 1.0
CB B:GLN687 4.7 28.6 1.0
O B:VAL685 4.8 31.3 1.0
CB B:TYR802 4.8 28.9 1.0
C B:ASN694 4.8 30.7 1.0
CA B:PRO688 4.8 28.9 1.0
CG B:ARG803 4.8 29.1 1.0
CD B:ARG803 4.8 27.7 1.0
CA B:ASP689 4.9 33.2 1.0
O B:PRO688 4.9 34.6 1.0
CG2 B:VAL684 4.9 27.9 1.0
N B:ILE690 5.0 30.1 1.0
CA B:ILE690 5.0 32.0 1.0

Potassium binding site 3 out of 3 in 8b5x

Go back to Potassium Binding Sites List in 8b5x
Potassium binding site 3 out of 3 in the Crystal Structure of the SUN1-KASH6 9:6 Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of the SUN1-KASH6 9:6 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K901

b:43.5
occ:1.00
 O C:HOH1006 2.5 37.0 1.0
O C:VAL684 2.5 32.5 1.0
O C:TYR802 2.5 23.8 1.0
O C:GLN687 2.7 26.1 1.0
O C:ASP689 3.1 30.0 1.0
C C:TYR802 3.6 23.7 1.0
C C:VAL684 3.6 26.4 1.0
O C:ASN694 3.7 33.8 1.0
C C:GLN687 3.7 32.2 1.0
C C:ASP689 4.2 32.5 1.0
O C:HOH1044 4.3 37.1 1.0
CB C:VAL684 4.3 24.8 1.0
N C:GLN687 4.3 22.2 1.0
CA C:VAL684 4.4 23.3 1.0
CA C:TYR802 4.4 23.9 1.0
CB C:ARG803 4.4 27.1 1.0
N C:ASP689 4.4 34.7 1.0
C C:PRO688 4.5 30.2 1.0
CA C:GLN687 4.5 24.9 1.0
N C:ARG803 4.6 22.1 1.0
CG2 C:ILE690 4.6 47.3 1.0
CA C:ARG803 4.6 27.0 1.0
N C:VAL685 4.6 24.7 1.0
N C:PRO688 4.6 31.9 1.0
CB C:GLN687 4.6 26.4 1.0
CA C:VAL685 4.6 21.4 1.0
C C:VAL685 4.7 25.4 1.0
CG2 C:VAL684 4.8 22.6 1.0
CA C:PRO688 4.8 27.9 1.0
O C:PRO688 4.8 33.8 1.0
C C:ASN694 4.8 28.8 1.0
O C:VAL685 4.9 24.2 1.0
CA C:ASP689 4.9 34.4 1.0
CB C:TYR802 4.9 25.9 1.0
CG C:ARG803 4.9 26.8 1.0
CD C:ARG803 5.0 30.6 1.0

Reference:

M.Gurusaran, B.S.Erlandsen, O.R.Davies. Crystal Structure of SUN1-KASH6 Reveals An Asymmetric Higher Order Linc Architecture Compatible with Nuclear Membrane Insertion To Be Published.
Page generated: Mon Aug 12 22:02:01 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy