Potassium in PDB 8b46: Crystal Structure of the SUN1-KASH6 9:9 Complex
Protein crystallography data
The structure of Crystal Structure of the SUN1-KASH6 9:9 Complex, PDB code: 8b46
was solved by
M.Gurusaran,
B.S.Erlandsen,
O.R.Davies,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.89 /
1.67
|
Space group
|
P 63
|
Cell size a, b, c (Å), α, β, γ (°)
|
134.094,
134.094,
106.586,
90,
90,
120
|
R / Rfree (%)
|
16.6 /
19
|
Other elements in 8b46:
The structure of Crystal Structure of the SUN1-KASH6 9:9 Complex also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of the SUN1-KASH6 9:9 Complex
(pdb code 8b46). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the
Crystal Structure of the SUN1-KASH6 9:9 Complex, PDB code: 8b46:
Jump to Potassium binding site number:
1;
2;
3;
Potassium binding site 1 out
of 3 in 8b46
Go back to
Potassium Binding Sites List in 8b46
Potassium binding site 1 out
of 3 in the Crystal Structure of the SUN1-KASH6 9:9 Complex
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of the SUN1-KASH6 9:9 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K902
b:16.9
occ:1.00
|
O
|
A:VAL684
|
2.6
|
20.1
|
1.0
|
O
|
A:ASP689
|
2.7
|
23.9
|
1.0
|
O
|
A:TYR802
|
2.7
|
20.1
|
1.0
|
O
|
A:GLN687
|
2.8
|
21.8
|
1.0
|
O
|
A:HOH1152
|
3.0
|
32.2
|
1.0
|
O
|
A:ASN694
|
3.0
|
21.0
|
1.0
|
C
|
A:VAL684
|
3.7
|
21.7
|
1.0
|
C
|
A:TYR802
|
3.8
|
23.0
|
1.0
|
C
|
A:ASP689
|
3.8
|
23.8
|
1.0
|
C
|
A:GLN687
|
3.8
|
21.6
|
1.0
|
C
|
A:ASN694
|
4.1
|
24.1
|
1.0
|
CB
|
A:VAL684
|
4.3
|
24.4
|
1.0
|
N
|
A:ASP689
|
4.3
|
22.4
|
1.0
|
CG2
|
A:ILE690
|
4.4
|
29.1
|
1.0
|
CA
|
A:VAL684
|
4.4
|
21.9
|
1.0
|
CB
|
A:GLN687
|
4.4
|
23.4
|
1.0
|
CA
|
A:TYR802
|
4.5
|
22.1
|
1.0
|
CA
|
A:GLN687
|
4.5
|
20.8
|
1.0
|
N
|
A:GLN687
|
4.5
|
23.1
|
1.0
|
CG2
|
A:VAL684
|
4.6
|
20.6
|
1.0
|
C
|
A:PRO688
|
4.6
|
25.1
|
1.0
|
CA
|
A:ASP689
|
4.6
|
24.9
|
1.0
|
N
|
A:VAL685
|
4.6
|
22.2
|
1.0
|
CB
|
A:ASN694
|
4.7
|
24.0
|
1.0
|
CA
|
A:VAL685
|
4.7
|
21.0
|
1.0
|
CB
|
A:ARG803
|
4.8
|
25.7
|
1.0
|
N
|
A:PRO688
|
4.8
|
21.3
|
1.0
|
N
|
A:ILE690
|
4.8
|
23.0
|
1.0
|
N
|
A:ARG803
|
4.8
|
20.1
|
1.0
|
CA
|
A:ILE690
|
4.8
|
23.5
|
1.0
|
CA
|
A:ARG803
|
4.9
|
22.3
|
1.0
|
C
|
A:VAL685
|
5.0
|
21.3
|
1.0
|
|
Potassium binding site 2 out
of 3 in 8b46
Go back to
Potassium Binding Sites List in 8b46
Potassium binding site 2 out
of 3 in the Crystal Structure of the SUN1-KASH6 9:9 Complex
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of the SUN1-KASH6 9:9 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K901
b:21.9
occ:1.00
|
O
|
B:TYR802
|
2.6
|
20.9
|
1.0
|
O
|
B:ASP689
|
2.7
|
24.0
|
1.0
|
O
|
B:VAL684
|
2.7
|
24.1
|
1.0
|
O
|
B:GLN687
|
2.9
|
23.3
|
1.0
|
O
|
B:ASN694
|
2.9
|
22.6
|
1.0
|
O
|
B:HOH1125
|
3.0
|
38.1
|
1.0
|
C
|
B:VAL684
|
3.7
|
21.1
|
1.0
|
C
|
B:TYR802
|
3.8
|
23.6
|
1.0
|
C
|
B:ASP689
|
3.9
|
26.0
|
1.0
|
C
|
B:GLN687
|
3.9
|
22.4
|
1.0
|
CG2
|
B:ILE690
|
4.1
|
28.8
|
1.0
|
C
|
B:ASN694
|
4.1
|
22.5
|
1.0
|
CB
|
B:VAL684
|
4.2
|
21.2
|
1.0
|
CA
|
B:VAL684
|
4.4
|
23.8
|
1.0
|
CA
|
B:TYR802
|
4.5
|
23.8
|
1.0
|
N
|
B:ASP689
|
4.5
|
24.6
|
1.0
|
CB
|
B:ASN694
|
4.6
|
25.6
|
1.0
|
N
|
B:GLN687
|
4.6
|
21.6
|
1.0
|
CB
|
B:GLN687
|
4.6
|
21.9
|
1.0
|
CA
|
B:GLN687
|
4.6
|
21.2
|
1.0
|
C
|
B:PRO688
|
4.6
|
24.6
|
1.0
|
N
|
B:VAL685
|
4.7
|
20.5
|
1.0
|
CA
|
B:ILE690
|
4.7
|
25.8
|
1.0
|
CG2
|
B:VAL684
|
4.7
|
21.8
|
1.0
|
CB
|
B:ARG803
|
4.7
|
25.8
|
1.0
|
CA
|
B:VAL685
|
4.7
|
20.8
|
1.0
|
N
|
B:ILE690
|
4.7
|
25.6
|
1.0
|
CA
|
B:ASP689
|
4.7
|
26.4
|
1.0
|
N
|
B:ARG803
|
4.8
|
19.2
|
1.0
|
N
|
B:PRO688
|
4.8
|
24.5
|
1.0
|
CA
|
B:ARG803
|
4.9
|
21.3
|
1.0
|
C
|
B:VAL685
|
5.0
|
22.4
|
1.0
|
CA
|
B:ASN694
|
5.0
|
23.4
|
1.0
|
O
|
B:PRO688
|
5.0
|
25.9
|
1.0
|
|
Potassium binding site 3 out
of 3 in 8b46
Go back to
Potassium Binding Sites List in 8b46
Potassium binding site 3 out
of 3 in the Crystal Structure of the SUN1-KASH6 9:9 Complex
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Crystal Structure of the SUN1-KASH6 9:9 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K901
b:13.8
occ:1.00
|
O
|
C:ASP689
|
2.6
|
21.7
|
1.0
|
O
|
C:TYR802
|
2.6
|
17.4
|
1.0
|
O
|
C:VAL684
|
2.6
|
21.2
|
1.0
|
O
|
C:HOH1158
|
2.9
|
40.6
|
1.0
|
O
|
C:GLN687
|
2.9
|
19.4
|
1.0
|
O
|
C:ASN694
|
3.0
|
21.9
|
1.0
|
C
|
C:VAL684
|
3.7
|
21.0
|
1.0
|
C
|
C:TYR802
|
3.8
|
20.6
|
1.0
|
C
|
C:ASP689
|
3.8
|
25.7
|
1.0
|
C
|
C:GLN687
|
3.9
|
20.5
|
1.0
|
C
|
C:ASN694
|
4.1
|
27.3
|
1.0
|
CB
|
C:VAL684
|
4.2
|
23.0
|
1.0
|
CG2
|
C:ILE690
|
4.3
|
25.5
|
1.0
|
N
|
C:ASP689
|
4.4
|
25.4
|
1.0
|
CA
|
C:VAL684
|
4.4
|
23.3
|
1.0
|
CA
|
C:TYR802
|
4.5
|
19.4
|
1.0
|
CB
|
C:ASN694
|
4.5
|
23.9
|
1.0
|
CG2
|
C:VAL684
|
4.6
|
22.1
|
1.0
|
C
|
C:PRO688
|
4.6
|
22.3
|
1.0
|
N
|
C:GLN687
|
4.6
|
20.1
|
1.0
|
CA
|
C:ASP689
|
4.7
|
25.9
|
1.0
|
CB
|
C:ARG803
|
4.7
|
20.3
|
1.0
|
N
|
C:VAL685
|
4.7
|
17.6
|
1.0
|
CA
|
C:GLN687
|
4.7
|
20.1
|
1.0
|
CB
|
C:GLN687
|
4.7
|
19.5
|
1.0
|
N
|
C:ILE690
|
4.7
|
21.9
|
1.0
|
N
|
C:ARG803
|
4.7
|
17.9
|
1.0
|
CA
|
C:ILE690
|
4.8
|
21.4
|
1.0
|
CA
|
C:VAL685
|
4.8
|
16.2
|
1.0
|
CA
|
C:ARG803
|
4.9
|
20.1
|
1.0
|
N
|
C:PRO688
|
4.9
|
21.8
|
1.0
|
O
|
C:PRO688
|
5.0
|
23.8
|
1.0
|
CA
|
C:ASN694
|
5.0
|
20.9
|
1.0
|
N
|
C:CYS695
|
5.0
|
19.5
|
1.0
|
|
Reference:
M.Gurusaran,
B.S.Erlandsen,
O.R.Davies.
Crystal Structure of SUN1-KASH6 Reveals An Asymmetric Higher Order Linc Architecture Compatible with Nuclear Membrane Insertion To Be Published.
Page generated: Mon Aug 12 22:01:59 2024
|