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Potassium in PDB 7tzp: Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh

Enzymatic activity of Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh

All present enzymatic activity of Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh:
1.1.1.100;

Protein crystallography data

The structure of Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh, PDB code: 7tzp was solved by G.Minasov, L.Shuvalova, I.Dubrovska, O.Kiryukhina, K.J.F.Satchell, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.99 / 2.60
Space group F 2 2 2 1
Cell size a, b, c (Å), α, β, γ (°) 161.387, 256.02, 260.642, 90, 90, 90
R / Rfree (%) 18.9 / 22.7

Other elements in 7tzp:

The structure of Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh also contains other interesting chemical elements:

Chlorine (Cl) 14 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh (pdb code 7tzp). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh, PDB code: 7tzp:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 7tzp

Go back to Potassium Binding Sites List in 7tzp
Potassium binding site 1 out of 4 in the Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K301

b:56.1
occ:0.75
 O A:HOH511 2.8 44.9 1.0
O D:VAL235 3.0 40.4 1.0
O A:VAL235 3.0 38.7 1.0
OE1 D:GLU234 3.2 47.7 1.0
OE1 A:GLU234 3.2 47.7 1.0
O A:HOH404 3.6 37.8 1.0
C D:VAL235 4.1 39.4 1.0
CD A:GLU234 4.2 45.9 1.0
C A:VAL235 4.2 36.9 1.0
CD D:GLU234 4.2 46.9 1.0
OE2 A:GLU234 4.4 48.2 1.0
OE2 D:GLU234 4.4 48.9 1.0
N D:VAL235 4.5 41.0 1.0
N A:VAL235 4.6 36.9 1.0
CA D:VAL235 4.7 40.6 1.0
CB D:VAL235 4.8 41.8 1.0
CB A:VAL235 4.8 37.6 1.0
CA A:VAL235 4.8 37.3 1.0

Potassium binding site 2 out of 4 in 7tzp

Go back to Potassium Binding Sites List in 7tzp
Potassium binding site 2 out of 4 in the Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K301

b:68.0
occ:0.75
 O C:VAL235 3.0 40.0 1.0
O B:VAL235 3.0 36.1 1.0
O B:HOH522 3.0 36.6 1.0
OE1 C:GLU234 3.1 53.9 1.0
OE1 B:GLU234 3.3 48.7 1.0
O B:HOH413 3.5 54.5 1.0
O C:HOH423 3.6 44.9 1.0
CD C:GLU234 4.1 51.6 1.0
C C:VAL235 4.1 39.7 1.0
C B:VAL235 4.2 35.6 1.0
CD B:GLU234 4.3 49.0 1.0
OE2 C:GLU234 4.3 56.3 1.0
OE2 B:GLU234 4.4 52.4 1.0
O C:HOH472 4.5 49.4 1.0
N C:VAL235 4.5 40.0 1.0
N B:VAL235 4.7 38.4 1.0
CA C:VAL235 4.7 40.7 1.0
CB C:VAL235 4.8 41.5 1.0
O B:HOH532 4.8 55.6 1.0
CA B:VAL235 4.9 37.0 1.0
CB B:VAL235 4.9 37.2 1.0

Potassium binding site 3 out of 4 in 7tzp

Go back to Potassium Binding Sites List in 7tzp
Potassium binding site 3 out of 4 in the Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K301

b:70.1
occ:0.75
 O E:VAL235 2.9 46.6 1.0
OE1 E:GLU234 3.0 58.3 1.0
O E:HOH401 3.6 40.2 1.0
CD E:GLU234 4.1 59.3 1.0
C E:VAL235 4.1 44.9 1.0
OE2 E:GLU234 4.4 63.6 1.0
N E:VAL235 4.5 45.7 1.0
CA E:VAL235 4.7 44.8 1.0
CB E:VAL235 4.7 44.0 1.0

Potassium binding site 4 out of 4 in 7tzp

Go back to Potassium Binding Sites List in 7tzp
Potassium binding site 4 out of 4 in the Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K301

b:60.8
occ:0.75
 O G:VAL235 3.0 32.1 1.0
OE2 G:GLU234 3.1 48.3 1.0
O G:HOH401 3.4 35.2 1.0
C G:VAL235 4.1 30.5 1.0
CD G:GLU234 4.1 45.7 1.0
OE1 G:GLU234 4.4 50.3 1.0
N G:VAL235 4.4 32.5 1.0
CA G:VAL235 4.7 31.9 1.0
CB G:VAL235 4.7 31.9 1.0

Reference:

G.Minasov, L.Shuvalova, I.Dubrovska, O.Kiryukhina, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (Fabg) From Klebsiella Pneumoniae Subsp. Pneumoniae Ntuh-K2044 in Complex with Nadh. To Be Published.
Page generated: Mon Aug 12 21:17:31 2024

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