Potassium in PDB 7tmu: Crystal Structure of the Protein of Unknown Function YPO0625 From Yersinia Pestis

Protein crystallography data

The structure of Crystal Structure of the Protein of Unknown Function YPO0625 From Yersinia Pestis, PDB code: 7tmu was solved by Y.Kim, G.Chhor, M.Endres, G.Babnigg, O.Schneewind, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.87 / 2.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.872, 92.935, 82.991, 90, 92.05, 90
R / Rfree (%) 19.3 / 23.4

Other elements in 7tmu:

The structure of Crystal Structure of the Protein of Unknown Function YPO0625 From Yersinia Pestis also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the Protein of Unknown Function YPO0625 From Yersinia Pestis (pdb code 7tmu). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Crystal Structure of the Protein of Unknown Function YPO0625 From Yersinia Pestis, PDB code: 7tmu:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 7tmu

Go back to Potassium Binding Sites List in 7tmu
Potassium binding site 1 out of 4 in the Crystal Structure of the Protein of Unknown Function YPO0625 From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the Protein of Unknown Function YPO0625 From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K202

b:131.0
occ:1.00
 O A:HOH306 2.9 81.9 1.0
O A:SER31 3.0 95.1 1.0
O A:ALA37 3.0 92.0 1.0
O A:HIS34 3.1 91.4 1.0
C A:HIS34 4.0 99.7 1.0
CA A:PRO35 4.0 94.5 1.0
O A:PRO35 4.1 97.2 1.0
C A:SER31 4.1 84.7 1.0
C A:ALA37 4.2 94.2 1.0
C A:PRO35 4.3 101.8 1.0
N A:PRO35 4.5 95.0 1.0
CA A:SER31 4.8 84.8 1.0
N A:ALA37 4.8 89.1 1.0
CB A:SER31 4.9 81.9 1.0
O A:VAL38 5.0 90.3 1.0
N A:HIS34 5.0 78.0 1.0
CA A:ALA37 5.0 83.3 1.0

Potassium binding site 2 out of 4 in 7tmu

Go back to Potassium Binding Sites List in 7tmu
Potassium binding site 2 out of 4 in the Crystal Structure of the Protein of Unknown Function YPO0625 From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of the Protein of Unknown Function YPO0625 From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K203

b:125.4
occ:1.00
 O B:SER31 3.1 85.2 1.0
O B:HIS34 3.1 93.8 1.0
O B:ALA37 3.3 93.4 1.0
CA B:PRO35 3.8 86.3 1.0
O B:PRO35 3.9 101.0 1.0
C B:HIS34 4.0 87.8 1.0
C B:PRO35 4.1 96.9 1.0
C B:SER31 4.3 82.1 1.0
N B:PRO35 4.4 93.2 1.0
C B:ALA37 4.5 86.0 1.0
O B:ASP32 4.6 94.0 1.0
N B:ALA37 4.9 86.9 1.0
C B:ASP32 5.0 86.1 1.0

Potassium binding site 3 out of 4 in 7tmu

Go back to Potassium Binding Sites List in 7tmu
Potassium binding site 3 out of 4 in the Crystal Structure of the Protein of Unknown Function YPO0625 From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of the Protein of Unknown Function YPO0625 From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K203

b:115.0
occ:1.00
 O C:SER31 2.9 58.0 1.0
O C:ALA37 3.0 85.8 1.0
O C:HIS34 3.2 74.1 1.0
C C:SER31 4.1 62.2 1.0
C C:ALA37 4.1 74.4 1.0
C C:HIS34 4.3 65.0 1.0
CA C:PRO35 4.5 70.8 1.0
O C:PRO35 4.6 78.0 1.0
O C:VAL38 4.7 72.2 1.0
C C:PRO35 4.7 72.0 1.0
CA C:SER31 4.7 59.4 1.0
CA C:VAL38 4.8 67.0 1.0
CB C:SER31 4.9 62.6 1.0
N C:PRO35 4.9 88.3 1.0
O C:ASP32 4.9 60.1 1.0
N C:VAL38 4.9 73.0 1.0
N C:ALA37 5.0 69.5 1.0

Potassium binding site 4 out of 4 in 7tmu

Go back to Potassium Binding Sites List in 7tmu
Potassium binding site 4 out of 4 in the Crystal Structure of the Protein of Unknown Function YPO0625 From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of the Protein of Unknown Function YPO0625 From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K204

b:113.6
occ:1.00
 O D:ALA37 2.8 82.7 1.0
O D:HOH308 2.8 70.9 1.0
O D:HIS34 3.0 85.1 1.0
O D:SER31 3.1 63.1 1.0
C D:ALA37 3.9 75.6 1.0
O D:PRO35 4.1 75.0 1.0
C D:HIS34 4.1 74.0 1.0
CA D:PRO35 4.2 66.4 1.0
C D:SER31 4.3 72.8 1.0
C D:PRO35 4.3 65.6 1.0
CA D:VAL38 4.6 58.2 1.0
N D:PRO35 4.7 87.3 1.0
O D:VAL38 4.7 65.6 1.0
N D:ALA37 4.7 71.5 1.0
N D:VAL38 4.7 65.4 1.0
CA D:SER31 4.8 73.6 1.0
CA D:ALA37 4.9 63.5 1.0
CB D:SER31 4.9 56.8 1.0

Reference:

Y.Kim, G.Chhor, M.Endres, G.Babnigg, O.Schneewind, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of the Protein of Unknown Function YPO0625 From Yersinia Pestis To Be Published.
Page generated: Mon Aug 12 21:15:51 2024

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