Potassium in PDB 7qiy: Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.
Enzymatic activity of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.
All present enzymatic activity of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.:
2.7.11.24;
Other elements in 7qiy:
The structure of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit. also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.
(pdb code 7qiy). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 10 binding sites of Potassium where determined in the
Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit., PDB code: 7qiy:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Potassium binding site 1 out
of 10 in 7qiy
Go back to
Potassium Binding Sites List in 7qiy
Potassium binding site 1 out
of 10 in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:K1901
b:11.6
occ:1.00
|
O5'
|
2:C1200
|
2.8
|
10.2
|
1.0
|
OP1
|
2:A1199
|
2.9
|
8.9
|
1.0
|
OP1
|
2:C1198
|
2.9
|
11.2
|
1.0
|
O4'
|
2:C1200
|
3.0
|
10.2
|
1.0
|
HD21
|
L:ASN79
|
3.4
|
11.0
|
1.0
|
OP1
|
2:C1200
|
3.4
|
10.2
|
1.0
|
O
|
2:HOH2154
|
3.5
|
17.8
|
1.0
|
O
|
2:HOH2137
|
3.6
|
10.8
|
1.0
|
H5''
|
2:C1198
|
3.7
|
11.2
|
1.0
|
P
|
2:C1198
|
3.8
|
11.2
|
1.0
|
C4'
|
2:C1200
|
3.8
|
10.2
|
1.0
|
H4'
|
2:C1200
|
3.8
|
10.2
|
1.0
|
P
|
2:C1200
|
3.8
|
10.2
|
1.0
|
C5'
|
2:C1200
|
3.8
|
10.2
|
1.0
|
OP2
|
2:C1198
|
3.9
|
11.2
|
1.0
|
MG
|
2:MG1933
|
4.1
|
16.0
|
1.0
|
ND2
|
L:ASN79
|
4.1
|
11.0
|
1.0
|
P
|
2:A1199
|
4.1
|
8.9
|
1.0
|
H6
|
2:C1200
|
4.1
|
10.2
|
1.0
|
O5'
|
2:A1199
|
4.1
|
8.9
|
1.0
|
H1'
|
2:C1200
|
4.1
|
10.2
|
1.0
|
C1'
|
2:C1200
|
4.2
|
10.2
|
1.0
|
H5''
|
2:C1200
|
4.2
|
10.2
|
1.0
|
H3'
|
2:A1199
|
4.2
|
8.9
|
1.0
|
O5'
|
2:C1198
|
4.3
|
11.2
|
1.0
|
C5'
|
2:C1198
|
4.5
|
11.2
|
1.0
|
HD22
|
L:ASN79
|
4.5
|
11.0
|
1.0
|
H5'
|
2:C1200
|
4.6
|
10.2
|
1.0
|
C6
|
2:C1200
|
4.7
|
10.2
|
1.0
|
H3'
|
2:C1198
|
4.8
|
11.2
|
1.0
|
N1
|
2:C1200
|
4.8
|
10.2
|
1.0
|
OP2
|
2:C1200
|
4.8
|
10.2
|
1.0
|
O3'
|
2:A1199
|
4.8
|
8.9
|
1.0
|
OD1
|
L:ASN79
|
4.9
|
11.0
|
1.0
|
CG
|
L:ASN79
|
4.9
|
11.0
|
1.0
|
C3'
|
2:A1199
|
4.9
|
8.9
|
1.0
|
HO2'
|
2:C1200
|
5.0
|
10.2
|
0.0
|
|
Potassium binding site 2 out
of 10 in 7qiy
Go back to
Potassium Binding Sites List in 7qiy
Potassium binding site 2 out
of 10 in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:K1902
b:17.2
occ:1.00
|
O6
|
2:G1281
|
2.8
|
13.4
|
1.0
|
O4
|
2:U1434
|
2.9
|
10.2
|
1.0
|
O6
|
2:G1433
|
3.1
|
10.0
|
1.0
|
H41
|
2:C1282
|
3.2
|
11.0
|
1.0
|
H22
|
2:G1276
|
3.3
|
11.7
|
1.0
|
H3
|
2:U1434
|
3.3
|
10.2
|
1.0
|
O
|
2:HOH2149
|
3.3
|
10.2
|
1.0
|
N2
|
2:G1276
|
3.6
|
11.7
|
1.0
|
N4
|
2:C1282
|
3.7
|
11.0
|
1.0
|
H42
|
2:C1282
|
3.7
|
11.0
|
1.0
|
C4
|
2:U1434
|
3.8
|
10.2
|
1.0
|
H21
|
2:G1276
|
3.8
|
11.7
|
1.0
|
C6
|
2:G1281
|
3.9
|
13.4
|
1.0
|
N3
|
2:U1434
|
3.9
|
10.2
|
1.0
|
C6
|
2:G1433
|
4.0
|
10.0
|
1.0
|
O
|
2:HOH2113
|
4.1
|
8.1
|
1.0
|
C2
|
2:G1276
|
4.2
|
11.7
|
1.0
|
OP2
|
2:G1280
|
4.3
|
15.7
|
1.0
|
N7
|
2:G1281
|
4.3
|
13.4
|
1.0
|
O
|
2:HOH2081
|
4.4
|
10.2
|
1.0
|
N3
|
2:G1276
|
4.5
|
11.7
|
1.0
|
C5
|
2:G1281
|
4.5
|
13.4
|
1.0
|
C4
|
2:C1282
|
4.6
|
11.0
|
1.0
|
H1
|
2:G1433
|
4.7
|
10.0
|
1.0
|
N1
|
2:G1433
|
4.8
|
10.0
|
1.0
|
C5
|
2:G1433
|
4.9
|
10.0
|
1.0
|
N3
|
2:C1282
|
5.0
|
11.0
|
1.0
|
|
Potassium binding site 3 out
of 10 in 7qiy
Go back to
Potassium Binding Sites List in 7qiy
Potassium binding site 3 out
of 10 in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:K1903
b:21.8
occ:1.00
|
OP2
|
2:G1172
|
2.9
|
12.2
|
1.0
|
N7
|
2:G1173
|
3.0
|
10.3
|
1.0
|
OP2
|
2:U1171
|
3.0
|
11.1
|
1.0
|
N7
|
2:G1172
|
3.0
|
12.2
|
1.0
|
O6
|
2:G1173
|
3.1
|
10.3
|
1.0
|
H3'
|
2:U1171
|
3.3
|
11.1
|
1.0
|
H8
|
2:G1172
|
3.4
|
12.2
|
1.0
|
O5'
|
2:U1171
|
3.5
|
11.1
|
1.0
|
N7
|
2:G1579
|
3.5
|
12.7
|
1.0
|
C8
|
2:G1172
|
3.6
|
12.2
|
1.0
|
C5
|
2:G1173
|
3.7
|
10.3
|
1.0
|
C6
|
2:G1173
|
3.7
|
10.3
|
1.0
|
P
|
2:U1171
|
3.7
|
11.1
|
1.0
|
C8
|
2:G1579
|
4.0
|
12.7
|
1.0
|
H8
|
2:G1579
|
4.1
|
12.7
|
1.0
|
H6
|
2:U1171
|
4.1
|
11.1
|
1.0
|
C8
|
2:G1173
|
4.1
|
10.3
|
1.0
|
H5
|
2:U1171
|
4.1
|
11.1
|
1.0
|
P
|
2:G1172
|
4.2
|
12.2
|
1.0
|
C6
|
2:U1171
|
4.2
|
11.1
|
1.0
|
C5
|
2:G1579
|
4.3
|
12.7
|
1.0
|
C5
|
2:U1171
|
4.3
|
11.1
|
1.0
|
C3'
|
2:U1171
|
4.3
|
11.1
|
1.0
|
C5
|
2:G1172
|
4.3
|
12.2
|
1.0
|
OP1
|
2:U1171
|
4.3
|
11.1
|
1.0
|
H62
|
2:A1473
|
4.3
|
9.8
|
1.0
|
H8
|
2:G1173
|
4.4
|
10.3
|
1.0
|
O5'
|
2:G1172
|
4.4
|
12.2
|
1.0
|
O
|
2:HOH2097
|
4.4
|
9.1
|
1.0
|
C5'
|
2:U1171
|
4.6
|
11.1
|
1.0
|
O3'
|
2:U1171
|
4.7
|
11.1
|
1.0
|
O6
|
2:G1579
|
4.7
|
12.7
|
1.0
|
C6
|
2:G1579
|
4.8
|
12.7
|
1.0
|
O6
|
2:G1172
|
4.8
|
12.2
|
1.0
|
H5''
|
2:U1171
|
4.8
|
11.1
|
1.0
|
N9
|
2:G1172
|
4.9
|
12.2
|
1.0
|
N1
|
2:U1171
|
4.9
|
11.1
|
1.0
|
H3'
|
2:G1170
|
4.9
|
11.8
|
1.0
|
N9
|
2:G1579
|
4.9
|
12.7
|
1.0
|
C6
|
2:G1172
|
5.0
|
12.2
|
1.0
|
C4
|
2:G1173
|
5.0
|
10.3
|
1.0
|
H2'
|
2:U1171
|
5.0
|
11.1
|
1.0
|
C4'
|
2:U1171
|
5.0
|
11.1
|
1.0
|
|
Potassium binding site 4 out
of 10 in 7qiy
Go back to
Potassium Binding Sites List in 7qiy
Potassium binding site 4 out
of 10 in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:K1904
b:12.0
occ:1.00
|
O6
|
2:G1276
|
2.7
|
11.7
|
1.0
|
O4
|
2:U1438
|
2.9
|
15.0
|
1.0
|
O6
|
2:G1280
|
3.0
|
15.7
|
1.0
|
O
|
2:HOH2128
|
3.0
|
9.0
|
1.0
|
H1
|
2:G1280
|
3.3
|
15.7
|
1.0
|
H21
|
2:G1281
|
3.5
|
13.4
|
1.0
|
H5
|
2:U1438
|
3.5
|
15.0
|
1.0
|
H61
|
2:A1440
|
3.6
|
17.7
|
1.0
|
N2
|
2:G1281
|
3.7
|
13.4
|
1.0
|
H1
|
2:G1276
|
3.7
|
11.7
|
1.0
|
C6
|
2:G1276
|
3.7
|
11.7
|
1.0
|
H5'
|
2:C1435
|
3.8
|
11.7
|
1.0
|
C4
|
2:U1438
|
3.8
|
15.0
|
1.0
|
C6
|
2:G1280
|
3.9
|
15.7
|
1.0
|
N1
|
2:G1280
|
3.9
|
15.7
|
1.0
|
H2'
|
2:U1434
|
3.9
|
10.2
|
1.0
|
H22
|
2:G1281
|
3.9
|
13.4
|
1.0
|
N6
|
2:A1440
|
4.0
|
17.7
|
1.0
|
C5
|
2:U1438
|
4.0
|
15.0
|
1.0
|
H1
|
2:G1281
|
4.1
|
13.4
|
1.0
|
O2
|
2:U1434
|
4.1
|
10.2
|
1.0
|
C2
|
2:G1281
|
4.1
|
13.4
|
1.0
|
N1
|
2:G1276
|
4.1
|
11.7
|
1.0
|
O2'
|
2:U1434
|
4.3
|
10.2
|
1.0
|
H62
|
2:A1440
|
4.3
|
17.7
|
1.0
|
H4'
|
2:C1435
|
4.3
|
11.7
|
1.0
|
N1
|
2:G1281
|
4.3
|
13.4
|
1.0
|
N7
|
2:G1437
|
4.4
|
11.9
|
1.0
|
C2'
|
2:U1434
|
4.5
|
10.2
|
1.0
|
C5'
|
2:C1435
|
4.5
|
11.7
|
1.0
|
N7
|
2:A1440
|
4.6
|
17.7
|
1.0
|
C6
|
2:A1440
|
4.6
|
17.7
|
1.0
|
OP1
|
2:G1437
|
4.7
|
11.9
|
1.0
|
O4'
|
2:C1435
|
4.7
|
11.7
|
1.0
|
HO2'
|
2:U1434
|
4.7
|
10.2
|
0.0
|
H5''
|
2:C1435
|
4.7
|
11.7
|
1.0
|
C4'
|
2:C1435
|
4.7
|
11.7
|
1.0
|
C5
|
2:A1440
|
4.8
|
17.7
|
1.0
|
O6
|
2:G1437
|
4.8
|
11.9
|
1.0
|
C2
|
2:U1434
|
4.9
|
10.2
|
1.0
|
N3
|
2:G1281
|
4.9
|
13.4
|
1.0
|
|
Potassium binding site 5 out
of 10 in 7qiy
Go back to
Potassium Binding Sites List in 7qiy
Potassium binding site 5 out
of 10 in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:K1905
b:19.5
occ:1.00
|
O2
|
2:C1435
|
2.6
|
11.7
|
1.0
|
O4
|
2:U1275
|
2.9
|
13.2
|
1.0
|
O6
|
2:G1442
|
2.9
|
18.1
|
1.0
|
O6
|
2:OMG1274
|
3.1
|
15.8
|
1.0
|
HO2'
|
2:C1435
|
3.3
|
11.7
|
0.0
|
H3
|
2:U1275
|
3.4
|
13.2
|
1.0
|
C2
|
2:C1435
|
3.4
|
11.7
|
1.0
|
H3
|
2:U1441
|
3.4
|
17.2
|
1.0
|
H41
|
2:C1443
|
3.6
|
18.6
|
1.0
|
H1'
|
2:C1435
|
3.8
|
11.7
|
1.0
|
N3
|
2:U1441
|
3.8
|
17.2
|
1.0
|
C4
|
2:U1275
|
3.8
|
13.2
|
1.0
|
O4
|
2:U1441
|
3.9
|
17.2
|
1.0
|
C6
|
2:G1442
|
4.0
|
18.1
|
1.0
|
N3
|
2:U1275
|
4.0
|
13.2
|
1.0
|
C6
|
2:OMG1274
|
4.0
|
15.8
|
1.0
|
N3
|
2:C1435
|
4.0
|
11.7
|
1.0
|
N4
|
2:C1443
|
4.1
|
18.6
|
1.0
|
O2'
|
2:C1435
|
4.1
|
11.7
|
1.0
|
C4
|
2:U1441
|
4.1
|
17.2
|
1.0
|
N7
|
2:G1442
|
4.2
|
18.1
|
1.0
|
H42
|
2:C1443
|
4.2
|
18.6
|
1.0
|
N1
|
2:C1435
|
4.3
|
11.7
|
1.0
|
H61
|
2:A1278
|
4.4
|
16.2
|
1.0
|
C1'
|
2:C1435
|
4.4
|
11.7
|
1.0
|
C5
|
2:G1442
|
4.5
|
18.1
|
1.0
|
H62
|
2:A1278
|
4.5
|
16.2
|
1.0
|
HN1
|
2:OMG1274
|
4.5
|
15.8
|
1.0
|
C2
|
2:U1441
|
4.6
|
17.2
|
1.0
|
N6
|
2:A1278
|
4.7
|
16.2
|
1.0
|
N1
|
2:OMG1274
|
4.7
|
15.8
|
1.0
|
O2
|
2:U1441
|
4.8
|
17.2
|
1.0
|
C2'
|
2:C1435
|
4.9
|
11.7
|
1.0
|
C5
|
2:OMG1274
|
5.0
|
15.8
|
1.0
|
|
Potassium binding site 6 out
of 10 in 7qiy
Go back to
Potassium Binding Sites List in 7qiy
Potassium binding site 6 out
of 10 in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:K1906
b:58.9
occ:1.00
|
O6
|
2:G1359
|
2.8
|
26.8
|
1.0
|
O6
|
2:G1358
|
2.9
|
28.9
|
1.0
|
O4
|
2:U1370
|
3.1
|
26.9
|
1.0
|
H61
|
2:A1360
|
3.5
|
28.2
|
1.0
|
H62
|
2:A1360
|
3.5
|
28.2
|
1.0
|
H41
|
2:C1371
|
3.6
|
26.8
|
1.0
|
H3
|
2:U1370
|
3.7
|
26.9
|
1.0
|
N6
|
2:A1360
|
3.7
|
28.2
|
1.0
|
C6
|
2:G1358
|
3.8
|
28.9
|
1.0
|
C6
|
2:G1359
|
3.9
|
26.8
|
1.0
|
O4
|
2:U1369
|
4.0
|
32.5
|
1.0
|
N4
|
2:C1371
|
4.1
|
26.8
|
1.0
|
C4
|
2:U1370
|
4.1
|
26.9
|
1.0
|
H42
|
2:C1371
|
4.2
|
26.8
|
1.0
|
N3
|
2:U1370
|
4.2
|
26.9
|
1.0
|
N7
|
2:G1359
|
4.3
|
26.8
|
1.0
|
H1
|
2:G1358
|
4.5
|
28.9
|
1.0
|
C5
|
2:G1359
|
4.5
|
26.8
|
1.0
|
N1
|
2:G1358
|
4.5
|
28.9
|
1.0
|
C5
|
2:G1358
|
4.6
|
28.9
|
1.0
|
C6
|
2:A1360
|
4.7
|
28.2
|
1.0
|
N7
|
2:G1358
|
4.8
|
28.9
|
1.0
|
C4
|
2:C1371
|
4.9
|
26.8
|
1.0
|
|
Potassium binding site 7 out
of 10 in 7qiy
Go back to
Potassium Binding Sites List in 7qiy
Potassium binding site 7 out
of 10 in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 7 of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:K1907
b:44.9
occ:1.00
|
O
|
2:HOH2095
|
2.7
|
9.5
|
1.0
|
O4
|
2:U1549
|
2.8
|
12.7
|
1.0
|
OP2
|
2:A1548
|
3.2
|
10.6
|
1.0
|
HO2'
|
2:G1547
|
3.2
|
10.9
|
0.0
|
O4
|
2:U1572
|
3.4
|
14.6
|
1.0
|
O2'
|
2:G1547
|
3.5
|
10.9
|
1.0
|
H61
|
2:A1550
|
3.6
|
13.9
|
1.0
|
H3
|
2:U1572
|
3.7
|
14.6
|
1.0
|
C4
|
2:U1549
|
3.8
|
12.7
|
1.0
|
H5
|
2:U1549
|
3.9
|
12.7
|
1.0
|
H62
|
2:A1550
|
4.0
|
13.9
|
1.0
|
N6
|
2:A1550
|
4.0
|
13.9
|
1.0
|
C5
|
2:U1549
|
4.3
|
12.7
|
1.0
|
C4
|
2:U1572
|
4.3
|
14.6
|
1.0
|
N3
|
2:U1572
|
4.3
|
14.6
|
1.0
|
N7
|
2:A1548
|
4.5
|
10.6
|
1.0
|
P
|
2:A1548
|
4.6
|
10.6
|
1.0
|
C2'
|
2:G1547
|
4.8
|
10.9
|
1.0
|
H8
|
2:A1548
|
4.9
|
10.6
|
1.0
|
O3'
|
2:G1547
|
5.0
|
10.9
|
1.0
|
|
Potassium binding site 8 out
of 10 in 7qiy
Go back to
Potassium Binding Sites List in 7qiy
Potassium binding site 8 out
of 10 in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 8 of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:K201
b:28.6
occ:1.00
|
O
|
J:THR136
|
2.8
|
13.3
|
1.0
|
O
|
J:THR139
|
2.8
|
14.2
|
1.0
|
O2'
|
2:C1463
|
3.1
|
12.3
|
1.0
|
HB
|
J:THR136
|
3.1
|
13.3
|
1.0
|
HO2'
|
2:C1463
|
3.7
|
12.3
|
0.0
|
HA
|
J:THR136
|
3.8
|
13.3
|
1.0
|
C
|
J:THR136
|
3.8
|
13.3
|
1.0
|
O
|
J:GLY140
|
3.8
|
16.8
|
1.0
|
HG2
|
J:ARG141
|
3.8
|
15.7
|
1.0
|
CB
|
J:THR136
|
4.0
|
13.3
|
1.0
|
HA3
|
J:GLY140
|
4.0
|
16.8
|
1.0
|
C
|
J:GLY140
|
4.0
|
16.8
|
1.0
|
C
|
J:THR139
|
4.0
|
14.2
|
1.0
|
H2'
|
2:C1463
|
4.1
|
12.3
|
1.0
|
C2'
|
2:C1463
|
4.1
|
12.3
|
1.0
|
CA
|
J:THR136
|
4.1
|
13.3
|
1.0
|
HG3
|
J:ARG141
|
4.2
|
15.7
|
1.0
|
HA
|
J:ARG141
|
4.2
|
15.7
|
1.0
|
H3'
|
2:C1463
|
4.3
|
12.3
|
1.0
|
OP2
|
2:A1464
|
4.4
|
15.3
|
1.0
|
CA
|
J:GLY140
|
4.4
|
16.8
|
1.0
|
N
|
J:ARG141
|
4.5
|
15.7
|
1.0
|
CG
|
J:ARG141
|
4.5
|
15.7
|
1.0
|
HG21
|
J:THR136
|
4.6
|
13.3
|
1.0
|
C3'
|
2:C1463
|
4.6
|
12.3
|
1.0
|
OP2
|
2:C1465
|
4.7
|
14.2
|
1.0
|
N
|
J:GLY140
|
4.7
|
16.8
|
1.0
|
H
|
J:THR139
|
4.8
|
14.2
|
1.0
|
O3'
|
2:C1463
|
4.8
|
12.3
|
1.0
|
CA
|
J:ARG141
|
4.8
|
15.7
|
1.0
|
CG2
|
J:THR136
|
4.8
|
13.3
|
1.0
|
HE
|
J:ARG141
|
4.9
|
15.7
|
1.0
|
H
|
J:ARG141
|
4.9
|
15.7
|
1.0
|
N
|
J:THR139
|
4.9
|
14.2
|
1.0
|
OG1
|
J:THR136
|
5.0
|
13.3
|
1.0
|
|
Potassium binding site 9 out
of 10 in 7qiy
Go back to
Potassium Binding Sites List in 7qiy
Potassium binding site 9 out
of 10 in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 9 of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:K201
b:38.2
occ:1.00
|
O
|
K:GLY81
|
2.8
|
11.9
|
1.0
|
O
|
K:ILE79
|
2.8
|
13.0
|
1.0
|
O
|
2:HOH2119
|
2.9
|
17.3
|
1.0
|
O4
|
2:U1485
|
3.1
|
13.2
|
1.0
|
O
|
2:HOH2152
|
3.2
|
18.6
|
1.0
|
HA
|
K:TYR80
|
3.4
|
11.9
|
1.0
|
O2
|
2:PSU1484
|
3.6
|
12.7
|
1.0
|
OP1
|
2:A1530
|
3.7
|
10.4
|
1.0
|
C
|
K:ILE79
|
3.8
|
13.0
|
1.0
|
C
|
K:GLY81
|
3.9
|
11.9
|
1.0
|
C
|
K:TYR80
|
4.0
|
11.9
|
1.0
|
CA
|
K:TYR80
|
4.0
|
11.9
|
1.0
|
N
|
K:GLY81
|
4.1
|
11.9
|
1.0
|
H
|
K:GLY81
|
4.3
|
11.9
|
1.0
|
N
|
K:TYR80
|
4.3
|
11.9
|
1.0
|
C4
|
2:U1485
|
4.3
|
13.2
|
1.0
|
O
|
K:TYR80
|
4.5
|
11.9
|
1.0
|
HA2
|
K:GLY82
|
4.6
|
11.8
|
1.0
|
O
|
K:ARG78
|
4.6
|
14.2
|
1.0
|
C2
|
2:PSU1484
|
4.7
|
12.7
|
1.0
|
CA
|
K:GLY81
|
4.7
|
11.9
|
1.0
|
H3
|
2:U1485
|
4.7
|
13.2
|
1.0
|
HA3
|
K:GLY82
|
4.8
|
11.8
|
1.0
|
HA
|
K:ILE79
|
4.8
|
13.0
|
1.0
|
N
|
K:GLY82
|
4.9
|
11.8
|
1.0
|
P
|
2:A1530
|
4.9
|
10.4
|
1.0
|
CA
|
K:GLY82
|
5.0
|
11.8
|
1.0
|
CA
|
K:ILE79
|
5.0
|
13.0
|
1.0
|
|
Potassium binding site 10 out
of 10 in 7qiy
Go back to
Potassium Binding Sites List in 7qiy
Potassium binding site 10 out
of 10 in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit.
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 10 of Specific Features and Methylation Sites of A Plant Ribosome. 40S Head Ribosomal Subunit. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:K101
b:11.2
occ:1.00
|
OD1
|
N:ASN26
|
2.8
|
13.1
|
1.0
|
HB2
|
N:CYS39
|
2.8
|
12.7
|
1.0
|
O
|
N:HIS28
|
2.9
|
10.4
|
1.0
|
O
|
2:HOH2060
|
2.9
|
7.8
|
1.0
|
HO2'
|
2:G1437
|
2.9
|
11.9
|
0.0
|
OE1
|
N:GLN41
|
3.0
|
10.9
|
1.0
|
H1'
|
2:G1437
|
3.2
|
11.9
|
1.0
|
HB2
|
N:HIS28
|
3.2
|
10.4
|
1.0
|
H4'
|
2:G1437
|
3.2
|
11.9
|
1.0
|
O4'
|
2:G1437
|
3.3
|
11.9
|
1.0
|
HB3
|
N:ASN26
|
3.3
|
13.1
|
1.0
|
CB
|
N:CYS39
|
3.5
|
12.7
|
1.0
|
HB3
|
N:ALA29
|
3.5
|
11.1
|
1.0
|
CG
|
N:ASN26
|
3.6
|
13.1
|
1.0
|
C1'
|
2:G1437
|
3.7
|
11.9
|
1.0
|
H
|
N:HIS28
|
3.7
|
10.4
|
1.0
|
HB3
|
N:CYS39
|
3.7
|
12.7
|
1.0
|
SG
|
N:CYS39
|
3.7
|
12.7
|
1.0
|
C
|
N:HIS28
|
3.7
|
10.4
|
1.0
|
O2'
|
2:G1437
|
3.7
|
11.9
|
1.0
|
C4'
|
2:G1437
|
3.8
|
11.9
|
1.0
|
CB
|
N:ASN26
|
4.0
|
13.1
|
1.0
|
CB
|
N:HIS28
|
4.0
|
10.4
|
1.0
|
CD
|
N:GLN41
|
4.1
|
10.9
|
1.0
|
HE21
|
N:GLN41
|
4.2
|
10.9
|
1.0
|
CA
|
N:HIS28
|
4.2
|
10.4
|
1.0
|
C2'
|
2:G1437
|
4.3
|
11.9
|
1.0
|
N
|
N:HIS28
|
4.3
|
10.4
|
1.0
|
HB2
|
N:ASN26
|
4.4
|
13.1
|
1.0
|
HB3
|
N:HIS28
|
4.4
|
10.4
|
1.0
|
CB
|
N:ALA29
|
4.4
|
11.1
|
1.0
|
NE2
|
N:GLN41
|
4.5
|
10.9
|
1.0
|
H5'
|
2:G1437
|
4.5
|
11.9
|
1.0
|
HB2
|
N:GLN41
|
4.5
|
10.9
|
1.0
|
H
|
N:GLN41
|
4.6
|
10.9
|
1.0
|
HB1
|
N:ALA29
|
4.6
|
11.1
|
1.0
|
HG2
|
N:ARG40
|
4.7
|
10.9
|
1.0
|
C3'
|
2:G1437
|
4.7
|
11.9
|
1.0
|
H
|
N:ARG40
|
4.7
|
10.9
|
1.0
|
N
|
N:ALA29
|
4.7
|
11.1
|
1.0
|
ND2
|
N:ASN26
|
4.7
|
13.1
|
1.0
|
C5'
|
2:G1437
|
4.8
|
11.9
|
1.0
|
CA
|
N:CYS39
|
4.9
|
12.7
|
1.0
|
HD13
|
N:ILE30
|
4.9
|
13.0
|
1.0
|
N9
|
2:G1437
|
5.0
|
11.9
|
1.0
|
HD21
|
N:ASN26
|
5.0
|
13.1
|
1.0
|
HA
|
N:CYS39
|
5.0
|
12.7
|
1.0
|
OP2
|
2:G1202
|
5.0
|
10.6
|
1.0
|
HD2
|
N:HIS28
|
5.0
|
10.4
|
1.0
|
|
Reference:
P.Cottilli,
Y.Itoh,
Y.Nobe,
A.S.Petrov,
P.Lison,
M.Taoka,
A.Amunts.
Cryo-Em Structure and Rrna Modification Sites of A Plant Ribosome. Plant Commun. V. 3 00342 2022.
ISSN: ISSN 2590-3462
PubMed: 35643637
DOI: 10.1016/J.XPLC.2022.100342
Page generated: Mon Aug 12 20:29:50 2024
|