Atomistry » Potassium » PDB 7pxh-7r2w » 7pxh
Atomistry »
  Potassium »
    PDB 7pxh-7r2w »
      7pxh »

Potassium in PDB 7pxh: Emodepside-Bound Drosophila Slo Channel

Other elements in 7pxh:

The structure of Emodepside-Bound Drosophila Slo Channel also contains other interesting chemical elements:

Calcium (Ca) 8 atoms
Magnesium (Mg) 4 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Emodepside-Bound Drosophila Slo Channel (pdb code 7pxh). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Emodepside-Bound Drosophila Slo Channel, PDB code: 7pxh:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in 7pxh

Go back to Potassium Binding Sites List in 7pxh
Potassium binding site 1 out of 6 in the Emodepside-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Emodepside-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1209

b:42.7
occ:0.50
 O C:GLY303 2.9 47.3 1.0
O D:GLY303 2.9 48.2 1.0
O B:GLY303 2.9 48.5 1.0
O A:GLY303 2.9 47.6 1.0
O C:TYR304 3.1 51.6 1.0
O A:TYR304 3.2 52.0 1.0
O B:TYR304 3.3 52.8 1.0
O D:TYR304 3.4 53.2 1.0
K A:K1210 3.6 42.7 0.5
C C:TYR304 3.7 51.6 1.0
C A:TYR304 3.7 52.0 1.0
C B:TYR304 3.8 52.8 1.0
C D:TYR304 3.9 53.2 1.0
C C:GLY303 4.1 47.3 1.0
C D:GLY303 4.1 48.2 1.0
C A:GLY303 4.1 47.6 1.0
C B:GLY303 4.1 48.5 1.0
CA C:TYR304 4.3 51.6 1.0
N C:GLY305 4.3 56.8 1.0
K C:K1209 4.3 54.1 0.2
N A:GLY305 4.3 56.0 1.0
CA A:TYR304 4.4 52.0 1.0
N B:GLY305 4.4 56.2 1.0
CA B:TYR304 4.4 52.8 1.0
N D:GLY305 4.5 57.9 1.0
CA D:TYR304 4.5 53.2 1.0
CA A:GLY305 4.6 56.0 1.0
CA C:GLY305 4.6 56.8 1.0
CA B:GLY305 4.7 56.2 1.0
N C:TYR304 4.7 51.6 1.0
CA D:GLY305 4.7 57.9 1.0
N A:TYR304 4.8 52.0 1.0
N B:TYR304 4.8 52.8 1.0
N D:TYR304 4.8 53.2 1.0

Potassium binding site 2 out of 6 in 7pxh

Go back to Potassium Binding Sites List in 7pxh
Potassium binding site 2 out of 6 in the Emodepside-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Emodepside-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1210

b:42.7
occ:0.50
 O B:VAL302 2.7 49.0 1.0
O D:VAL302 2.7 48.9 1.0
O A:GLY303 2.7 47.6 1.0
O C:GLY303 2.7 47.3 1.0
O C:VAL302 2.8 48.0 1.0
O B:GLY303 2.8 48.5 1.0
O A:VAL302 2.8 48.7 1.0
O D:GLY303 2.8 48.2 1.0
K A:K1211 3.0 41.5 0.5
C A:GLY303 3.6 47.6 1.0
C C:GLY303 3.6 47.3 1.0
C D:GLY303 3.6 48.2 1.0
K A:K1209 3.6 42.7 0.5
C B:GLY303 3.6 48.5 1.0
C D:VAL302 3.8 48.9 1.0
CA D:GLY303 3.8 48.2 1.0
C B:VAL302 3.8 49.0 1.0
CA A:GLY303 3.8 47.6 1.0
C C:VAL302 3.8 48.0 1.0
C A:VAL302 3.9 48.7 1.0
CA B:GLY303 3.9 48.5 1.0
CA C:GLY303 3.9 47.3 1.0
N D:GLY303 4.2 48.2 1.0
N A:GLY303 4.3 47.6 1.0
N B:GLY303 4.3 48.5 1.0
N C:GLY303 4.3 47.3 1.0
N C:TYR304 4.7 51.6 1.0
N A:TYR304 4.8 52.0 1.0
N B:TYR304 4.8 52.8 1.0
N D:TYR304 4.8 53.2 1.0

Potassium binding site 3 out of 6 in 7pxh

Go back to Potassium Binding Sites List in 7pxh
Potassium binding site 3 out of 6 in the Emodepside-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Emodepside-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1211

b:41.5
occ:0.50
 O C:VAL302 2.9 48.0 1.0
O D:THR301 2.9 53.1 1.0
O B:THR301 2.9 53.5 1.0
O A:THR301 2.9 52.9 1.0
O A:VAL302 3.0 48.7 1.0
K A:K1210 3.0 42.7 0.5
O C:THR301 3.0 52.9 1.0
O B:VAL302 3.1 49.0 1.0
O D:VAL302 3.1 48.9 1.0
C C:VAL302 3.6 48.0 1.0
C A:VAL302 3.6 48.7 1.0
C D:VAL302 3.7 48.9 1.0
C B:VAL302 3.7 49.0 1.0
K A:K1212 3.8 47.5 0.5
C D:THR301 3.9 53.1 1.0
C A:THR301 3.9 52.9 1.0
C B:THR301 3.9 53.5 1.0
C C:THR301 3.9 52.9 1.0
CA C:VAL302 4.0 48.0 1.0
CA A:VAL302 4.1 48.7 1.0
CA D:VAL302 4.1 48.9 1.0
CA B:VAL302 4.1 49.0 1.0
N A:VAL302 4.4 48.7 1.0
N D:VAL302 4.4 48.9 1.0
N C:VAL302 4.4 48.0 1.0
N B:VAL302 4.4 49.0 1.0
N A:GLY303 4.5 47.6 1.0
N C:GLY303 4.5 47.3 1.0
N D:GLY303 4.6 48.2 1.0
N B:GLY303 4.6 48.5 1.0
CA A:GLY303 4.9 47.6 1.0
CA C:GLY303 4.9 47.3 1.0
CA D:THR301 5.0 53.1 1.0
CA A:THR301 5.0 52.9 1.0
CA D:GLY303 5.0 48.2 1.0

Potassium binding site 4 out of 6 in 7pxh

Go back to Potassium Binding Sites List in 7pxh
Potassium binding site 4 out of 6 in the Emodepside-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Emodepside-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1212

b:47.5
occ:0.50
 O C:THR301 2.9 52.9 1.0
OG1 B:THR301 3.0 53.5 1.0
O A:THR301 3.0 52.9 1.0
O B:THR301 3.0 53.5 1.0
O D:THR301 3.0 53.1 1.0
OG1 D:THR301 3.0 53.1 1.0
OG1 A:THR301 3.0 52.9 1.0
OG1 C:THR301 3.2 52.9 1.0
CB A:THR301 3.5 52.9 1.0
CB B:THR301 3.5 53.5 1.0
CB D:THR301 3.5 53.1 1.0
K A:K1213 3.6 75.7 0.2
CB C:THR301 3.7 52.9 1.0
K A:K1211 3.8 41.5 0.5
C B:THR301 4.0 53.5 1.0
C A:THR301 4.0 52.9 1.0
C C:THR301 4.0 52.9 1.0
C D:THR301 4.0 53.1 1.0
CA A:THR301 4.4 52.9 1.0
CA B:THR301 4.4 53.5 1.0
CA D:THR301 4.4 53.1 1.0
CA C:THR301 4.5 52.9 1.0
CG2 A:THR301 4.7 52.9 1.0
CG2 B:THR301 4.7 53.5 1.0
CG2 D:THR301 4.7 53.1 1.0
CG2 C:THR301 5.0 52.9 1.0
O B:SER300 5.0 57.7 1.0
O D:SER300 5.0 55.8 1.0

Potassium binding site 5 out of 6 in 7pxh

Go back to Potassium Binding Sites List in 7pxh
Potassium binding site 5 out of 6 in the Emodepside-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Emodepside-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1213

b:75.7
occ:0.25
 O10 B:8I21209 3.2 86.5 1.0
O30 B:8I21209 3.3 86.5 1.0
K A:K1212 3.6 47.5 0.5
O41 B:8I21209 3.8 86.5 1.0
C88 B:8I21209 3.8 86.5 1.0
OG1 A:THR301 3.9 52.9 1.0
OG1 C:THR301 3.9 52.9 1.0
N6 B:8I21209 4.0 86.5 1.0
C9 B:8I21209 4.0 86.5 1.0
O20 B:8I21209 4.2 86.5 1.0
OG1 B:THR301 4.2 53.5 1.0
C65 B:8I21209 4.2 86.5 1.0
OG1 D:THR301 4.3 53.1 1.0
C39 B:8I21209 4.3 86.5 1.0
C4 B:8I21209 4.4 86.5 1.0
O25 B:8I21209 4.4 86.5 1.0
O40 B:8I21209 4.4 86.5 1.0
C7 B:8I21209 4.5 86.5 1.0
C29 B:8I21209 4.5 86.5 1.0
C2 B:8I21209 4.7 86.5 1.0
C24 B:8I21209 4.7 86.5 1.0
CB A:THR301 4.8 52.9 1.0
CB C:THR301 4.9 52.9 1.0
C19 B:8I21209 4.9 86.5 1.0
O11 B:8I21209 5.0 86.5 1.0

Potassium binding site 6 out of 6 in 7pxh

Go back to Potassium Binding Sites List in 7pxh
Potassium binding site 6 out of 6 in the Emodepside-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Emodepside-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1209

b:54.1
occ:0.25
 O C:TYR304 4.2 51.6 1.0
O B:TYR304 4.2 52.8 1.0
O D:TYR304 4.2 53.2 1.0
O A:TYR304 4.2 52.0 1.0
K A:K1209 4.3 42.7 0.5
CA C:GLY305 4.8 56.8 1.0
CA B:GLY305 4.8 56.2 1.0
CA D:GLY305 4.9 57.9 1.0
CA A:GLY305 4.9 56.0 1.0
O C:GLY305 5.0 56.8 1.0
O A:GLY305 5.0 56.0 1.0
C C:GLY305 5.0 56.8 1.0

Reference:

T.Raisch, A.Brockmann, U.Ebbinghaus-Kintscher, J.Freigang, O.Gutbrod, J.Kubicek, B.Maertens, O.Hofnagel, S.Raunser. Small Molecule Modulation of the Drosophila Slo Channel Elucidated By Cryo-Em To Be Published.
DOI: 10.1038/S41467-021-27435-W
Page generated: Mon Aug 12 20:26:21 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy