Atomistry » Potassium » PDB 7pxh-7r2w » 7pxh
Atomistry »
  Potassium »
    PDB 7pxh-7r2w »
      7pxh »

Potassium in PDB 7pxh: Emodepside-Bound Drosophila Slo Channel

Other elements in 7pxh:

The structure of Emodepside-Bound Drosophila Slo Channel also contains other interesting chemical elements:

Calcium (Ca) 8 atoms
Magnesium (Mg) 4 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Emodepside-Bound Drosophila Slo Channel (pdb code 7pxh). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Emodepside-Bound Drosophila Slo Channel, PDB code: 7pxh:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in 7pxh

Go back to Potassium Binding Sites List in 7pxh
Potassium binding site 1 out of 6 in the Emodepside-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Emodepside-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1209

b:42.7
occ:0.50
 O C:GLY303 2.9 47.3 1.0
O D:GLY303 2.9 48.2 1.0
O B:GLY303 2.9 48.5 1.0
O A:GLY303 2.9 47.6 1.0
O C:TYR304 3.1 51.6 1.0
O A:TYR304 3.2 52.0 1.0
O B:TYR304 3.3 52.8 1.0
O D:TYR304 3.4 53.2 1.0
K A:K1210 3.6 42.7 0.5
C C:TYR304 3.7 51.6 1.0
C A:TYR304 3.7 52.0 1.0
C B:TYR304 3.8 52.8 1.0
C D:TYR304 3.9 53.2 1.0
C C:GLY303 4.1 47.3 1.0
C D:GLY303 4.1 48.2 1.0
C A:GLY303 4.1 47.6 1.0
C B:GLY303 4.1 48.5 1.0
CA C:TYR304 4.3 51.6 1.0
N C:GLY305 4.3 56.8 1.0
K C:K1209 4.3 54.1 0.2
N A:GLY305 4.3 56.0 1.0
CA A:TYR304 4.4 52.0 1.0
N B:GLY305 4.4 56.2 1.0
CA B:TYR304 4.4 52.8 1.0
N D:GLY305 4.5 57.9 1.0
CA D:TYR304 4.5 53.2 1.0
CA A:GLY305 4.6 56.0 1.0
CA C:GLY305 4.6 56.8 1.0
CA B:GLY305 4.7 56.2 1.0
N C:TYR304 4.7 51.6 1.0
CA D:GLY305 4.7 57.9 1.0
N A:TYR304 4.8 52.0 1.0
N B:TYR304 4.8 52.8 1.0
N D:TYR304 4.8 53.2 1.0

Potassium binding site 2 out of 6 in 7pxh

Go back to Potassium Binding Sites List in 7pxh
Potassium binding site 2 out of 6 in the Emodepside-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Emodepside-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1210

b:42.7
occ:0.50
 O B:VAL302 2.7 49.0 1.0
O D:VAL302 2.7 48.9 1.0
O A:GLY303 2.7 47.6 1.0
O C:GLY303 2.7 47.3 1.0
O C:VAL302 2.8 48.0 1.0
O B:GLY303 2.8 48.5 1.0
O A:VAL302 2.8 48.7 1.0
O D:GLY303 2.8 48.2 1.0
K A:K1211 3.0 41.5 0.5
C A:GLY303 3.6 47.6 1.0
C C:GLY303 3.6 47.3 1.0
C D:GLY303 3.6 48.2 1.0
K A:K1209 3.6 42.7 0.5
C B:GLY303 3.6 48.5 1.0
C D:VAL302 3.8 48.9 1.0
CA D:GLY303 3.8 48.2 1.0
C B:VAL302 3.8 49.0 1.0
CA A:GLY303 3.8 47.6 1.0
C C:VAL302 3.8 48.0 1.0
C A:VAL302 3.9 48.7 1.0
CA B:GLY303 3.9 48.5 1.0
CA C:GLY303 3.9 47.3 1.0
N D:GLY303 4.2 48.2 1.0
N A:GLY303 4.3 47.6 1.0
N B:GLY303 4.3 48.5 1.0
N C:GLY303 4.3 47.3 1.0
N C:TYR304 4.7 51.6 1.0
N A:TYR304 4.8 52.0 1.0
N B:TYR304 4.8 52.8 1.0
N D:TYR304 4.8 53.2 1.0

Potassium binding site 3 out of 6 in 7pxh

Go back to Potassium Binding Sites List in 7pxh
Potassium binding site 3 out of 6 in the Emodepside-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Emodepside-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1211

b:41.5
occ:0.50
 O C:VAL302 2.9 48.0 1.0
O D:THR301 2.9 53.1 1.0
O B:THR301 2.9 53.5 1.0
O A:THR301 2.9 52.9 1.0
O A:VAL302 3.0 48.7 1.0
K A:K1210 3.0 42.7 0.5
O C:THR301 3.0 52.9 1.0
O B:VAL302 3.1 49.0 1.0
O D:VAL302 3.1 48.9 1.0
C C:VAL302 3.6 48.0 1.0
C A:VAL302 3.6 48.7 1.0
C D:VAL302 3.7 48.9 1.0
C B:VAL302 3.7 49.0 1.0
K A:K1212 3.8 47.5 0.5
C D:THR301 3.9 53.1 1.0
C A:THR301 3.9 52.9 1.0
C B:THR301 3.9 53.5 1.0
C C:THR301 3.9 52.9 1.0
CA C:VAL302 4.0 48.0 1.0
CA A:VAL302 4.1 48.7 1.0
CA D:VAL302 4.1 48.9 1.0
CA B:VAL302 4.1 49.0 1.0
N A:VAL302 4.4 48.7 1.0
N D:VAL302 4.4 48.9 1.0
N C:VAL302 4.4 48.0 1.0
N B:VAL302 4.4 49.0 1.0
N A:GLY303 4.5 47.6 1.0
N C:GLY303 4.5 47.3 1.0
N D:GLY303 4.6 48.2 1.0
N B:GLY303 4.6 48.5 1.0
CA A:GLY303 4.9 47.6 1.0
CA C:GLY303 4.9 47.3 1.0
CA D:THR301 5.0 53.1 1.0
CA A:THR301 5.0 52.9 1.0
CA D:GLY303 5.0 48.2 1.0

Potassium binding site 4 out of 6 in 7pxh

Go back to Potassium Binding Sites List in 7pxh
Potassium binding site 4 out of 6 in the Emodepside-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Emodepside-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1212

b:47.5
occ:0.50
 O C:THR301 2.9 52.9 1.0
OG1 B:THR301 3.0 53.5 1.0
O A:THR301 3.0 52.9 1.0
O B:THR301 3.0 53.5 1.0
O D:THR301 3.0 53.1 1.0
OG1 D:THR301 3.0 53.1 1.0
OG1 A:THR301 3.0 52.9 1.0
OG1 C:THR301 3.2 52.9 1.0
CB A:THR301 3.5 52.9 1.0
CB B:THR301 3.5 53.5 1.0
CB D:THR301 3.5 53.1 1.0
K A:K1213 3.6 75.7 0.2
CB C:THR301 3.7 52.9 1.0
K A:K1211 3.8 41.5 0.5
C B:THR301 4.0 53.5 1.0
C A:THR301 4.0 52.9 1.0
C C:THR301 4.0 52.9 1.0
C D:THR301 4.0 53.1 1.0
CA A:THR301 4.4 52.9 1.0
CA B:THR301 4.4 53.5 1.0
CA D:THR301 4.4 53.1 1.0
CA C:THR301 4.5 52.9 1.0
CG2 A:THR301 4.7 52.9 1.0
CG2 B:THR301 4.7 53.5 1.0
CG2 D:THR301 4.7 53.1 1.0
CG2 C:THR301 5.0 52.9 1.0
O B:SER300 5.0 57.7 1.0
O D:SER300 5.0 55.8 1.0

Potassium binding site 5 out of 6 in 7pxh

Go back to Potassium Binding Sites List in 7pxh
Potassium binding site 5 out of 6 in the Emodepside-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Emodepside-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1213

b:75.7
occ:0.25
 O10 B:8I21209 3.2 86.5 1.0
O30 B:8I21209 3.3 86.5 1.0
K A:K1212 3.6 47.5 0.5
O41 B:8I21209 3.8 86.5 1.0
C88 B:8I21209 3.8 86.5 1.0
OG1 A:THR301 3.9 52.9 1.0
OG1 C:THR301 3.9 52.9 1.0
N6 B:8I21209 4.0 86.5 1.0
C9 B:8I21209 4.0 86.5 1.0
O20 B:8I21209 4.2 86.5 1.0
OG1 B:THR301 4.2 53.5 1.0
C65 B:8I21209 4.2 86.5 1.0
OG1 D:THR301 4.3 53.1 1.0
C39 B:8I21209 4.3 86.5 1.0
C4 B:8I21209 4.4 86.5 1.0
O25 B:8I21209 4.4 86.5 1.0
O40 B:8I21209 4.4 86.5 1.0
C7 B:8I21209 4.5 86.5 1.0
C29 B:8I21209 4.5 86.5 1.0
C2 B:8I21209 4.7 86.5 1.0
C24 B:8I21209 4.7 86.5 1.0
CB A:THR301 4.8 52.9 1.0
CB C:THR301 4.9 52.9 1.0
C19 B:8I21209 4.9 86.5 1.0
O11 B:8I21209 5.0 86.5 1.0

Potassium binding site 6 out of 6 in 7pxh

Go back to Potassium Binding Sites List in 7pxh
Potassium binding site 6 out of 6 in the Emodepside-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Emodepside-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K1209

b:54.1
occ:0.25
 O C:TYR304 4.2 51.6 1.0
O B:TYR304 4.2 52.8 1.0
O D:TYR304 4.2 53.2 1.0
O A:TYR304 4.2 52.0 1.0
K A:K1209 4.3 42.7 0.5
CA C:GLY305 4.8 56.8 1.0
CA B:GLY305 4.8 56.2 1.0
CA D:GLY305 4.9 57.9 1.0
CA A:GLY305 4.9 56.0 1.0
O C:GLY305 5.0 56.8 1.0
O A:GLY305 5.0 56.0 1.0
C C:GLY305 5.0 56.8 1.0

Reference:

T.Raisch, A.Brockmann, U.Ebbinghaus-Kintscher, J.Freigang, O.Gutbrod, J.Kubicek, B.Maertens, O.Hofnagel, S.Raunser. Small Molecule Modulation of the Drosophila Slo Channel Elucidated By Cryo-Em To Be Published.
DOI: 10.1038/S41467-021-27435-W
Page generated: Mon Aug 12 20:26:21 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy